####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS381_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS381_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 32 1 - 32 4.98 8.41 LCS_AVERAGE: 75.91 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 22 - 31 1.96 11.37 LCS_AVERAGE: 17.49 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 18 - 22 0.72 10.73 LONGEST_CONTINUOUS_SEGMENT: 5 22 - 26 0.84 11.63 LCS_AVERAGE: 9.70 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 3 32 0 4 6 6 8 10 12 16 19 24 25 28 29 30 31 32 33 35 36 38 LCS_GDT Q 2 Q 2 3 4 32 0 3 6 6 8 10 12 15 19 24 25 28 29 30 31 32 33 35 36 38 LCS_GDT E 3 E 3 3 4 32 0 3 3 6 8 10 12 16 19 24 25 28 29 30 31 32 33 35 36 38 LCS_GDT T 4 T 4 3 4 32 1 3 5 6 8 10 13 16 19 24 25 28 29 30 31 32 33 35 36 38 LCS_GDT R 5 R 5 3 4 32 3 3 4 6 8 10 13 16 19 24 25 28 29 30 31 32 33 35 36 38 LCS_GDT K 6 K 6 3 6 32 3 3 4 5 8 9 13 16 19 24 25 28 29 30 31 32 33 35 36 38 LCS_GDT K 7 K 7 3 7 32 3 3 4 5 8 9 12 16 19 24 25 28 29 30 31 32 33 35 36 38 LCS_GDT C 8 C 8 3 7 32 3 4 4 5 8 9 13 16 19 24 25 28 29 30 31 32 33 35 36 38 LCS_GDT T 9 T 9 3 7 32 3 3 4 5 8 9 13 16 19 24 25 28 29 30 31 32 33 35 36 38 LCS_GDT E 10 E 10 4 7 32 3 4 4 5 8 9 13 16 19 24 25 28 29 30 31 32 33 35 36 38 LCS_GDT M 11 M 11 4 7 32 3 4 4 6 8 10 12 16 19 24 25 28 29 30 31 32 33 35 36 38 LCS_GDT K 12 K 12 4 7 32 3 4 4 6 8 10 11 15 17 22 25 28 29 30 31 32 33 35 36 38 LCS_GDT K 13 K 13 4 7 32 4 4 5 6 8 10 13 16 19 24 25 28 29 30 31 32 33 35 36 38 LCS_GDT K 14 K 14 4 5 32 4 4 7 9 9 10 13 16 19 24 25 28 29 30 31 32 33 35 36 38 LCS_GDT F 15 F 15 4 5 32 3 4 5 7 8 12 13 16 19 24 25 28 29 30 31 32 33 35 36 38 LCS_GDT K 16 K 16 4 8 32 3 4 5 7 8 10 14 18 20 24 26 28 29 30 31 32 33 35 36 38 LCS_GDT N 17 N 17 4 8 32 2 4 4 6 9 13 13 16 21 25 26 28 29 30 31 32 33 35 36 38 LCS_GDT C 18 C 18 5 8 32 3 5 9 9 10 13 13 16 21 25 26 28 29 30 31 32 33 35 36 38 LCS_GDT E 19 E 19 5 8 32 3 6 9 9 10 13 13 16 21 25 26 28 29 30 31 32 33 35 36 38 LCS_GDT V 20 V 20 5 8 32 3 6 9 9 10 13 18 20 22 25 26 28 29 30 31 32 33 35 36 38 LCS_GDT R 21 R 21 5 8 32 3 5 9 9 10 14 18 20 22 25 26 28 29 30 31 32 33 34 35 37 LCS_GDT C 22 C 22 5 10 32 3 7 10 10 11 14 18 20 22 25 26 26 28 30 31 32 33 34 35 37 LCS_GDT D 23 D 23 5 10 32 3 4 10 10 11 14 18 20 22 25 26 26 29 30 31 32 33 34 35 38 LCS_GDT E 24 E 24 5 10 32 3 7 10 10 11 14 18 20 22 25 26 26 28 30 31 32 33 34 35 38 LCS_GDT S 25 S 25 5 10 32 3 7 10 10 11 14 18 20 22 25 26 28 29 30 31 32 33 34 36 38 LCS_GDT N 26 N 26 5 10 32 3 4 10 10 11 14 18 20 22 25 26 28 29 30 31 32 33 35 36 38 LCS_GDT H 27 H 27 4 10 32 4 4 5 9 10 14 15 20 22 25 26 27 28 29 31 32 33 35 36 38 LCS_GDT C 28 C 28 4 10 32 4 4 6 9 10 14 18 20 22 25 26 28 29 30 31 32 33 35 36 38 LCS_GDT V 29 V 29 4 10 32 4 4 7 9 9 13 15 18 22 25 26 28 29 30 31 32 33 35 36 38 LCS_GDT E 30 E 30 4 10 32 4 4 8 9 11 14 15 18 22 25 26 28 29 30 31 32 33 35 36 38 LCS_GDT V 31 V 31 4 10 32 3 7 10 10 11 14 18 20 22 25 26 28 29 30 31 32 33 35 36 38 LCS_GDT R 32 R 32 4 7 32 3 6 9 9 10 13 18 20 22 25 26 28 29 30 31 32 33 35 36 38 LCS_GDT C 33 C 33 4 7 28 3 6 9 9 10 13 18 20 22 25 26 27 28 30 31 32 33 35 36 38 LCS_GDT S 34 S 34 4 7 28 3 6 9 9 10 12 18 20 22 25 26 26 26 28 29 31 33 35 36 38 LCS_GDT D 35 D 35 4 7 28 3 3 4 5 9 11 14 20 22 25 26 26 26 27 29 31 33 35 36 38 LCS_GDT T 36 T 36 4 7 28 3 3 4 7 9 12 18 20 22 25 26 26 26 27 27 28 32 34 36 38 LCS_GDT K 37 K 37 3 6 28 3 3 4 6 9 13 18 20 22 25 26 26 26 27 29 31 33 35 36 38 LCS_GDT Y 38 Y 38 4 6 28 3 7 10 10 11 14 18 20 22 25 26 26 26 27 29 31 33 35 36 38 LCS_GDT T 39 T 39 4 5 28 3 7 10 10 11 14 18 20 22 25 26 26 26 29 29 31 33 35 36 38 LCS_GDT L 40 L 40 4 5 28 3 7 10 10 11 14 18 20 22 25 26 26 26 27 29 31 33 35 36 38 LCS_GDT C 41 C 41 4 5 28 3 4 10 10 11 14 18 20 22 25 26 26 26 27 28 31 33 35 36 37 LCS_AVERAGE LCS_A: 34.36 ( 9.70 17.49 75.91 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 7 10 10 11 14 18 20 22 25 26 28 29 30 31 32 33 35 36 38 GDT PERCENT_AT 9.76 17.07 24.39 24.39 26.83 34.15 43.90 48.78 53.66 60.98 63.41 68.29 70.73 73.17 75.61 78.05 80.49 85.37 87.80 92.68 GDT RMS_LOCAL 0.21 0.62 0.92 0.92 1.23 1.96 2.74 2.94 3.16 3.54 3.65 4.28 4.48 4.64 4.74 4.94 5.11 5.87 6.09 6.63 GDT RMS_ALL_AT 7.46 11.32 11.32 11.32 11.43 11.51 11.70 11.70 11.51 11.75 11.61 8.19 8.30 8.13 8.05 8.10 8.23 7.48 7.27 7.09 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: F 15 F 15 # possible swapping detected: E 24 E 24 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 20.603 0 0.645 0.688 23.004 0.000 0.000 18.919 LGA Q 2 Q 2 18.791 0 0.591 1.158 24.929 0.000 0.000 24.929 LGA E 3 E 3 18.465 0 0.638 1.343 18.465 0.000 0.000 13.964 LGA T 4 T 4 16.415 0 0.579 1.035 17.297 0.000 0.000 11.815 LGA R 5 R 5 20.424 0 0.629 0.520 26.540 0.000 0.000 23.390 LGA K 6 K 6 24.503 0 0.048 1.203 33.079 0.000 0.000 33.079 LGA K 7 K 7 18.483 0 0.608 1.044 20.543 0.000 0.000 17.266 LGA C 8 C 8 15.421 0 0.091 0.721 17.236 0.000 0.000 15.613 LGA T 9 T 9 21.814 0 0.599 0.689 26.319 0.000 0.000 24.183 LGA E 10 E 10 23.737 0 0.315 0.890 31.103 0.000 0.000 28.861 LGA M 11 M 11 18.477 0 0.173 1.079 20.031 0.000 0.000 20.031 LGA K 12 K 12 14.688 0 0.185 0.987 15.947 0.000 0.000 13.604 LGA K 13 K 13 18.848 0 0.131 0.587 27.028 0.000 0.000 27.028 LGA K 14 K 14 14.789 0 0.618 1.339 17.669 0.000 0.000 16.803 LGA F 15 F 15 9.160 0 0.334 0.428 16.252 0.000 0.000 16.252 LGA K 16 K 16 6.126 0 0.266 1.330 7.633 0.000 0.000 7.633 LGA N 17 N 17 6.596 0 0.299 1.153 8.697 0.000 0.000 6.607 LGA C 18 C 18 6.096 0 0.634 1.170 8.039 0.000 0.000 7.623 LGA E 19 E 19 5.927 0 0.251 0.840 11.976 12.273 5.455 11.606 LGA V 20 V 20 3.336 0 0.132 1.043 7.027 14.091 8.052 6.075 LGA R 21 R 21 1.601 0 0.218 1.354 12.181 58.182 22.810 10.994 LGA C 22 C 22 2.451 0 0.069 0.366 6.029 55.000 37.576 6.029 LGA D 23 D 23 1.914 0 0.149 0.186 5.032 63.182 35.909 5.032 LGA E 24 E 24 2.259 0 0.114 0.931 6.491 33.636 17.980 5.859 LGA S 25 S 25 3.211 0 0.591 0.769 4.715 20.909 16.061 4.715 LGA N 26 N 26 2.376 0 0.366 1.044 7.340 41.818 24.318 5.920 LGA H 27 H 27 3.727 0 0.358 1.078 11.200 16.818 6.727 10.472 LGA C 28 C 28 3.775 0 0.071 0.806 6.081 26.818 18.182 6.081 LGA V 29 V 29 5.273 0 0.059 0.259 8.758 0.000 0.000 7.743 LGA E 30 E 30 4.868 0 0.141 0.221 9.328 15.455 6.869 8.093 LGA V 31 V 31 3.705 0 0.128 0.220 6.865 5.909 3.636 4.556 LGA R 32 R 32 3.222 0 0.120 1.230 12.565 31.364 11.405 12.565 LGA C 33 C 33 1.878 0 0.103 0.575 6.140 40.000 28.485 6.140 LGA S 34 S 34 2.815 0 0.139 0.722 5.201 26.364 19.394 5.201 LGA D 35 D 35 4.266 0 0.558 0.473 6.528 20.455 10.227 6.235 LGA T 36 T 36 2.628 0 0.143 0.890 4.560 20.909 13.766 4.267 LGA K 37 K 37 3.191 0 0.203 1.636 8.857 40.455 18.182 8.857 LGA Y 38 Y 38 3.429 0 0.562 0.648 14.375 30.455 10.152 14.375 LGA T 39 T 39 1.548 0 0.169 1.156 3.354 36.364 41.818 2.663 LGA L 40 L 40 2.814 0 0.589 0.958 4.734 25.909 20.227 4.734 LGA C 41 C 41 2.661 0 0.245 0.358 5.542 15.455 13.506 4.265 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 7.074 7.055 8.640 15.898 9.530 1.064 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 20 2.94 42.073 37.663 0.658 LGA_LOCAL RMSD: 2.937 Number of atoms: 20 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.704 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 7.074 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.608145 * X + -0.714670 * Y + -0.345551 * Z + -4.898232 Y_new = 0.580263 * X + 0.697262 * Y + -0.420858 * Z + 3.730120 Z_new = 0.541714 * X + 0.055432 * Y + 0.838733 * Z + -4.743095 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.761941 -0.572475 0.065994 [DEG: 43.6560 -32.8004 3.7812 ] ZXZ: -0.687454 0.575844 1.468825 [DEG: -39.3882 32.9934 84.1575 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS381_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS381_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 20 2.94 37.663 7.07 REMARK ---------------------------------------------------------- MOLECULE T0955TS381_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 1 CB SER 1 -16.043 -8.243 -10.790 1.00 0.00 C ATOM 2 OG SER 1 -14.999 -8.684 -9.936 1.00 0.00 O ATOM 4 C SER 1 -14.836 -6.251 -11.746 1.00 0.00 C ATOM 5 O SER 1 -15.500 -5.208 -11.803 1.00 0.00 O ATOM 8 N SER 1 -14.541 -8.525 -12.745 1.00 0.00 N ATOM 10 CA SER 1 -15.494 -7.599 -12.070 1.00 0.00 C ATOM 11 N GLN 2 -13.530 -6.288 -11.425 1.00 0.00 N ATOM 13 CA GLN 2 -12.666 -5.125 -11.071 1.00 0.00 C ATOM 14 CB GLN 2 -12.361 -4.234 -12.294 1.00 0.00 C ATOM 15 CG GLN 2 -11.486 -4.888 -13.357 1.00 0.00 C ATOM 16 CD GLN 2 -11.216 -3.973 -14.536 1.00 0.00 C ATOM 17 OE1 GLN 2 -11.960 -3.972 -15.517 1.00 0.00 O ATOM 18 NE2 GLN 2 -10.148 -3.188 -14.445 1.00 0.00 N ATOM 21 C GLN 2 -13.125 -4.250 -9.886 1.00 0.00 C ATOM 22 O GLN 2 -14.321 -3.960 -9.750 1.00 0.00 O ATOM 23 N GLU 3 -12.162 -3.845 -9.046 1.00 0.00 N ATOM 25 CA GLU 3 -12.399 -3.003 -7.856 1.00 0.00 C ATOM 26 CB GLU 3 -11.736 -3.619 -6.612 1.00 0.00 C ATOM 27 CG GLU 3 -12.374 -4.917 -6.123 1.00 0.00 C ATOM 28 CD GLU 3 -11.684 -5.483 -4.896 1.00 0.00 C ATOM 29 OE1 GLU 3 -12.090 -5.131 -3.768 1.00 0.00 O ATOM 30 OE2 GLU 3 -10.737 -6.281 -5.058 1.00 0.00 O ATOM 31 C GLU 3 -11.883 -1.572 -8.063 1.00 0.00 C ATOM 32 O GLU 3 -10.891 -1.367 -8.771 1.00 0.00 O ATOM 33 N THR 4 -12.561 -0.598 -7.424 1.00 0.00 N ATOM 35 CA THR 4 -12.276 0.867 -7.456 1.00 0.00 C ATOM 36 CB THR 4 -11.088 1.283 -6.507 1.00 0.00 C ATOM 37 OG1 THR 4 -9.920 0.518 -6.830 1.00 0.00 O ATOM 39 CG2 THR 4 -11.457 1.063 -5.045 1.00 0.00 C ATOM 40 C THR 4 -12.105 1.533 -8.843 1.00 0.00 C ATOM 41 O THR 4 -11.384 1.012 -9.708 1.00 0.00 O ATOM 42 N ARG 5 -12.796 2.666 -9.041 1.00 0.00 N ATOM 44 CA ARG 5 -12.771 3.452 -10.293 1.00 0.00 C ATOM 45 CB ARG 5 -14.200 3.740 -10.781 1.00 0.00 C ATOM 46 CG ARG 5 -14.965 2.518 -11.277 1.00 0.00 C ATOM 47 CD ARG 5 -16.366 2.892 -11.739 1.00 0.00 C ATOM 48 NE ARG 5 -17.116 1.729 -12.220 1.00 0.00 N ATOM 50 CZ ARG 5 -18.366 1.762 -12.684 1.00 0.00 C ATOM 51 NH1 ARG 5 -19.049 2.900 -12.746 1.00 0.00 N ATOM 54 NH2 ARG 5 -18.939 0.638 -13.092 1.00 0.00 N ATOM 57 C ARG 5 -12.011 4.774 -10.100 1.00 0.00 C ATOM 58 O ARG 5 -11.917 5.263 -8.972 1.00 0.00 O ATOM 59 N LYS 6 -11.498 5.343 -11.208 1.00 0.00 N ATOM 61 CA LYS 6 -10.717 6.613 -11.283 1.00 0.00 C ATOM 62 CB LYS 6 -11.532 7.844 -10.825 1.00 0.00 C ATOM 63 CG LYS 6 -12.701 8.205 -11.733 1.00 0.00 C ATOM 64 CD LYS 6 -13.451 9.427 -11.212 1.00 0.00 C ATOM 65 CE LYS 6 -14.627 9.807 -12.108 1.00 0.00 C ATOM 66 NZ LYS 6 -14.216 10.335 -13.443 1.00 0.00 N ATOM 70 C LYS 6 -9.341 6.591 -10.586 1.00 0.00 C ATOM 71 O LYS 6 -8.335 6.969 -11.196 1.00 0.00 O ATOM 72 N LYS 7 -9.316 6.141 -9.318 1.00 0.00 N ATOM 74 CA LYS 7 -8.118 6.004 -8.440 1.00 0.00 C ATOM 75 CB LYS 7 -7.210 4.841 -8.898 1.00 0.00 C ATOM 76 CG LYS 7 -7.910 3.485 -8.995 1.00 0.00 C ATOM 77 CD LYS 7 -7.091 2.492 -9.811 1.00 0.00 C ATOM 78 CE LYS 7 -7.828 1.172 -10.020 1.00 0.00 C ATOM 79 NZ LYS 7 -8.998 1.286 -10.942 1.00 0.00 N ATOM 83 C LYS 7 -7.272 7.273 -8.186 1.00 0.00 C ATOM 84 O LYS 7 -7.115 8.107 -9.084 1.00 0.00 O ATOM 85 N CYS 8 -6.731 7.379 -6.958 1.00 0.00 N ATOM 87 CA CYS 8 -5.874 8.480 -6.430 1.00 0.00 C ATOM 88 CB CYS 8 -4.434 8.409 -6.976 1.00 0.00 C ATOM 89 SG CYS 8 -4.269 8.650 -8.762 1.00 0.00 S ATOM 90 C CYS 8 -6.380 9.935 -6.460 1.00 0.00 C ATOM 91 O CYS 8 -6.256 10.641 -5.453 1.00 0.00 O ATOM 92 N THR 9 -6.940 10.369 -7.599 1.00 0.00 N ATOM 94 CA THR 9 -7.470 11.737 -7.780 1.00 0.00 C ATOM 95 CB THR 9 -7.341 12.211 -9.272 1.00 0.00 C ATOM 96 OG1 THR 9 -6.229 11.548 -9.888 1.00 0.00 O ATOM 98 CG2 THR 9 -7.101 13.726 -9.350 1.00 0.00 C ATOM 99 C THR 9 -8.940 11.809 -7.290 1.00 0.00 C ATOM 100 O THR 9 -9.833 11.171 -7.870 1.00 0.00 O ATOM 101 N GLU 10 -9.151 12.545 -6.183 1.00 0.00 N ATOM 103 CA GLU 10 -10.458 12.768 -5.500 1.00 0.00 C ATOM 104 CB GLU 10 -11.358 13.742 -6.299 1.00 0.00 C ATOM 105 CG GLU 10 -10.849 15.179 -6.355 1.00 0.00 C ATOM 106 CD GLU 10 -11.764 16.095 -7.147 1.00 0.00 C ATOM 107 OE1 GLU 10 -11.564 16.221 -8.374 1.00 0.00 O ATOM 108 OE2 GLU 10 -12.681 16.690 -6.543 1.00 0.00 O ATOM 109 C GLU 10 -11.222 11.467 -5.136 1.00 0.00 C ATOM 110 O GLU 10 -12.434 11.493 -4.872 1.00 0.00 O ATOM 111 N MET 11 -10.474 10.355 -5.074 1.00 0.00 N ATOM 113 CA MET 11 -11.004 9.015 -4.768 1.00 0.00 C ATOM 114 CG MET 11 -11.238 7.079 -6.440 1.00 0.00 C ATOM 115 SD MET 11 -10.894 5.319 -6.249 1.00 0.00 S ATOM 116 CE MET 11 -12.257 4.818 -5.199 1.00 0.00 C ATOM 117 C MET 11 -10.957 8.608 -3.280 1.00 0.00 C ATOM 118 O MET 11 -12.013 8.403 -2.669 1.00 0.00 O ATOM 119 CB MET 11 -10.291 7.955 -5.626 1.00 0.00 C ATOM 120 N LYS 12 -9.744 8.499 -2.717 1.00 0.00 N ATOM 122 CA LYS 12 -9.531 8.088 -1.317 1.00 0.00 C ATOM 123 CB LYS 12 -8.498 6.928 -1.249 1.00 0.00 C ATOM 124 CG LYS 12 -8.855 5.643 -2.061 1.00 0.00 C ATOM 125 CD LYS 12 -9.985 4.776 -1.455 1.00 0.00 C ATOM 126 CE LYS 12 -10.271 3.555 -2.314 1.00 0.00 C ATOM 127 NZ LYS 12 -11.357 2.714 -1.739 1.00 0.00 N ATOM 131 C LYS 12 -9.173 9.253 -0.371 1.00 0.00 C ATOM 132 O LYS 12 -8.921 9.040 0.825 1.00 0.00 O ATOM 133 N LYS 13 -9.225 10.484 -0.912 1.00 0.00 N ATOM 135 CA LYS 13 -8.954 11.780 -0.224 1.00 0.00 C ATOM 136 CB LYS 13 -10.082 12.142 0.770 1.00 0.00 C ATOM 137 CG LYS 13 -11.421 12.471 0.121 1.00 0.00 C ATOM 138 CD LYS 13 -12.474 12.815 1.169 1.00 0.00 C ATOM 139 CE LYS 13 -13.825 13.150 0.540 1.00 0.00 C ATOM 140 NZ LYS 13 -14.497 11.975 -0.093 1.00 0.00 N ATOM 144 C LYS 13 -7.580 12.021 0.440 1.00 0.00 C ATOM 145 O LYS 13 -7.137 13.175 0.529 1.00 0.00 O ATOM 146 N LYS 14 -6.911 10.944 0.875 1.00 0.00 N ATOM 148 CA LYS 14 -5.592 11.005 1.540 1.00 0.00 C ATOM 149 CB LYS 14 -5.437 9.873 2.584 1.00 0.00 C ATOM 150 CG LYS 14 -5.938 8.471 2.184 1.00 0.00 C ATOM 151 CD LYS 14 -5.861 7.499 3.355 1.00 0.00 C ATOM 152 CE LYS 14 -6.418 6.121 3.001 1.00 0.00 C ATOM 153 NZ LYS 14 -5.589 5.374 2.009 1.00 0.00 N ATOM 157 C LYS 14 -4.373 11.081 0.594 1.00 0.00 C ATOM 158 O LYS 14 -4.311 10.352 -0.403 1.00 0.00 O ATOM 159 N PHE 15 -3.442 11.992 0.913 1.00 0.00 N ATOM 161 CA PHE 15 -2.208 12.243 0.145 1.00 0.00 C ATOM 162 CB PHE 15 -2.191 13.712 -0.367 1.00 0.00 C ATOM 163 CG PHE 15 -3.319 14.076 -1.332 1.00 0.00 C ATOM 164 CD1 PHE 15 -3.072 14.164 -2.723 1.00 0.00 C ATOM 165 CD2 PHE 15 -4.618 14.380 -0.859 1.00 0.00 C ATOM 166 CE1 PHE 15 -4.098 14.550 -3.629 1.00 0.00 C ATOM 167 CE2 PHE 15 -5.655 14.767 -1.754 1.00 0.00 C ATOM 168 CZ PHE 15 -5.393 14.852 -3.142 1.00 0.00 C ATOM 169 C PHE 15 -0.961 11.988 1.016 1.00 0.00 C ATOM 170 O PHE 15 -0.800 12.630 2.065 1.00 0.00 O ATOM 171 N LYS 16 -0.118 11.019 0.614 1.00 0.00 N ATOM 173 CA LYS 16 1.127 10.658 1.336 1.00 0.00 C ATOM 174 CB LYS 16 0.900 9.538 2.369 1.00 0.00 C ATOM 175 CG LYS 16 0.229 9.973 3.666 1.00 0.00 C ATOM 176 CD LYS 16 0.049 8.798 4.620 1.00 0.00 C ATOM 177 CE LYS 16 -0.622 9.212 5.928 1.00 0.00 C ATOM 178 NZ LYS 16 -2.054 9.606 5.765 1.00 0.00 N ATOM 182 C LYS 16 2.344 10.295 0.464 1.00 0.00 C ATOM 183 O LYS 16 3.283 11.096 0.377 1.00 0.00 O ATOM 184 N ASN 17 2.355 9.085 -0.129 1.00 0.00 N ATOM 186 CA ASN 17 3.470 8.577 -0.965 1.00 0.00 C ATOM 187 CB ASN 17 4.506 7.848 -0.081 1.00 0.00 C ATOM 188 CG ASN 17 5.406 8.804 0.695 1.00 0.00 C ATOM 189 OD1 ASN 17 5.097 9.187 1.825 1.00 0.00 O ATOM 190 ND2 ASN 17 6.533 9.177 0.094 1.00 0.00 N ATOM 193 C ASN 17 3.078 7.633 -2.125 1.00 0.00 C ATOM 194 O ASN 17 3.869 6.747 -2.488 1.00 0.00 O ATOM 195 N CYS 18 1.891 7.833 -2.726 1.00 0.00 N ATOM 197 CA CYS 18 1.340 7.005 -3.845 1.00 0.00 C ATOM 198 CB CYS 18 2.206 7.116 -5.124 1.00 0.00 C ATOM 199 SG CYS 18 1.687 6.107 -6.538 1.00 0.00 S ATOM 200 C CYS 18 1.161 5.534 -3.404 1.00 0.00 C ATOM 201 O CYS 18 0.941 4.631 -4.226 1.00 0.00 O ATOM 202 N GLU 19 1.184 5.347 -2.079 1.00 0.00 N ATOM 204 CA GLU 19 1.061 4.046 -1.406 1.00 0.00 C ATOM 205 CB GLU 19 1.637 4.138 0.004 1.00 0.00 C ATOM 206 CG GLU 19 3.157 4.285 0.069 1.00 0.00 C ATOM 207 CD GLU 19 3.679 4.358 1.492 1.00 0.00 C ATOM 208 OE1 GLU 19 3.992 3.296 2.068 1.00 0.00 O ATOM 209 OE2 GLU 19 3.777 5.480 2.033 1.00 0.00 O ATOM 210 C GLU 19 -0.383 3.547 -1.321 1.00 0.00 C ATOM 211 O GLU 19 -1.302 4.352 -1.108 1.00 0.00 O ATOM 212 N VAL 20 -0.571 2.234 -1.521 1.00 0.00 N ATOM 214 CA VAL 20 -1.902 1.612 -1.463 1.00 0.00 C ATOM 215 CB VAL 20 -2.398 1.020 -2.847 1.00 0.00 C ATOM 216 CG1 VAL 20 -2.516 2.125 -3.843 1.00 0.00 C ATOM 217 CG2 VAL 20 -1.501 -0.103 -3.366 1.00 0.00 C ATOM 218 C VAL 20 -2.176 0.650 -0.302 1.00 0.00 C ATOM 219 O VAL 20 -1.268 -0.043 0.173 1.00 0.00 O ATOM 220 N ARG 21 -3.429 0.692 0.169 1.00 0.00 N ATOM 222 CA ARG 21 -3.964 -0.127 1.264 1.00 0.00 C ATOM 223 CB ARG 21 -4.529 0.802 2.352 1.00 0.00 C ATOM 224 CG ARG 21 -4.471 0.248 3.782 1.00 0.00 C ATOM 225 CD ARG 21 -5.051 1.236 4.781 1.00 0.00 C ATOM 226 NE ARG 21 -5.004 0.725 6.153 1.00 0.00 N ATOM 228 CZ ARG 21 -5.443 1.375 7.231 1.00 0.00 C ATOM 229 NH1 ARG 21 -5.345 0.804 8.423 1.00 0.00 N ATOM 232 NH2 ARG 21 -5.977 2.589 7.133 1.00 0.00 N ATOM 235 C ARG 21 -5.086 -0.988 0.639 1.00 0.00 C ATOM 236 O ARG 21 -5.344 -0.865 -0.569 1.00 0.00 O ATOM 237 N CYS 22 -5.758 -1.806 1.475 1.00 0.00 N ATOM 239 CA CYS 22 -6.872 -2.731 1.124 1.00 0.00 C ATOM 240 CB CYS 22 -8.125 -1.980 0.625 1.00 0.00 C ATOM 241 SG CYS 22 -9.190 -1.376 1.955 1.00 0.00 S ATOM 242 C CYS 22 -6.545 -3.895 0.178 1.00 0.00 C ATOM 243 O CYS 22 -5.702 -3.751 -0.711 1.00 0.00 O ATOM 244 N ASP 23 -7.215 -5.041 0.403 1.00 0.00 N ATOM 246 CA ASP 23 -7.101 -6.317 -0.360 1.00 0.00 C ATOM 247 CB ASP 23 -7.855 -6.242 -1.708 1.00 0.00 C ATOM 248 CG ASP 23 -9.361 -6.073 -1.538 1.00 0.00 C ATOM 249 OD1 ASP 23 -9.832 -4.915 -1.487 1.00 0.00 O ATOM 250 OD2 ASP 23 -10.076 -7.097 -1.471 1.00 0.00 O ATOM 251 C ASP 23 -5.694 -6.920 -0.568 1.00 0.00 C ATOM 252 O ASP 23 -4.705 -6.185 -0.661 1.00 0.00 O ATOM 253 N GLU 24 -5.631 -8.258 -0.632 1.00 0.00 N ATOM 255 CA GLU 24 -4.386 -9.027 -0.823 1.00 0.00 C ATOM 256 CB GLU 24 -4.259 -10.120 0.255 1.00 0.00 C ATOM 257 CG GLU 24 -4.010 -9.599 1.669 1.00 0.00 C ATOM 258 CD GLU 24 -3.895 -10.713 2.692 1.00 0.00 C ATOM 259 OE1 GLU 24 -4.930 -11.104 3.269 1.00 0.00 O ATOM 260 OE2 GLU 24 -2.766 -11.196 2.922 1.00 0.00 O ATOM 261 C GLU 24 -4.310 -9.656 -2.229 1.00 0.00 C ATOM 262 O GLU 24 -3.276 -10.230 -2.604 1.00 0.00 O ATOM 263 N SER 25 -5.389 -9.492 -3.010 1.00 0.00 N ATOM 265 CA SER 25 -5.512 -10.029 -4.379 1.00 0.00 C ATOM 266 CB SER 25 -6.975 -10.395 -4.667 1.00 0.00 C ATOM 267 OG SER 25 -7.110 -11.114 -5.883 1.00 0.00 O ATOM 269 C SER 25 -4.981 -9.071 -5.464 1.00 0.00 C ATOM 270 O SER 25 -5.092 -7.847 -5.324 1.00 0.00 O ATOM 271 N ASN 26 -4.414 -9.657 -6.535 1.00 0.00 N ATOM 273 CA ASN 26 -3.821 -8.978 -7.720 1.00 0.00 C ATOM 274 CB ASN 26 -4.901 -8.630 -8.775 1.00 0.00 C ATOM 275 CG ASN 26 -5.564 -9.866 -9.375 1.00 0.00 C ATOM 276 OD1 ASN 26 -6.581 -10.346 -8.871 1.00 0.00 O ATOM 277 ND2 ASN 26 -4.997 -10.373 -10.467 1.00 0.00 N ATOM 280 C ASN 26 -2.871 -7.781 -7.465 1.00 0.00 C ATOM 281 O ASN 26 -1.675 -7.995 -7.233 1.00 0.00 O ATOM 282 N HIS 27 -3.402 -6.548 -7.508 1.00 0.00 N ATOM 284 CA HIS 27 -2.633 -5.309 -7.286 1.00 0.00 C ATOM 285 CG HIS 27 -3.725 -4.326 -9.404 1.00 0.00 C ATOM 286 CD2 HIS 27 -4.078 -4.806 -10.621 1.00 0.00 C ATOM 287 ND1 HIS 27 -4.792 -3.567 -8.971 1.00 0.00 N ATOM 289 CE1 HIS 27 -5.747 -3.586 -9.885 1.00 0.00 C ATOM 290 NE2 HIS 27 -5.338 -4.332 -10.895 1.00 0.00 N ATOM 292 C HIS 27 -3.229 -4.430 -6.176 1.00 0.00 C ATOM 293 O HIS 27 -2.478 -3.859 -5.377 1.00 0.00 O ATOM 294 CB HIS 27 -2.464 -4.494 -8.599 1.00 0.00 C ATOM 295 N CYS 28 -4.573 -4.344 -6.138 1.00 0.00 N ATOM 297 CA CYS 28 -5.397 -3.558 -5.173 1.00 0.00 C ATOM 298 CB CYS 28 -5.492 -4.262 -3.806 1.00 0.00 C ATOM 299 SG CYS 28 -3.922 -4.493 -2.930 1.00 0.00 S ATOM 300 C CYS 28 -4.983 -2.084 -4.986 1.00 0.00 C ATOM 301 O CYS 28 -3.844 -1.811 -4.586 1.00 0.00 O ATOM 302 N VAL 29 -5.896 -1.144 -5.283 1.00 0.00 N ATOM 304 CA VAL 29 -5.590 0.296 -5.158 1.00 0.00 C ATOM 305 CB VAL 29 -5.550 1.034 -6.579 1.00 0.00 C ATOM 306 CG1 VAL 29 -4.644 2.249 -6.561 1.00 0.00 C ATOM 307 CG2 VAL 29 -5.126 0.083 -7.702 1.00 0.00 C ATOM 308 C VAL 29 -6.522 1.109 -4.227 1.00 0.00 C ATOM 309 O VAL 29 -7.740 1.188 -4.444 1.00 0.00 O ATOM 310 N GLU 30 -5.920 1.606 -3.137 1.00 0.00 N ATOM 312 CA GLU 30 -6.522 2.527 -2.152 1.00 0.00 C ATOM 313 CB GLU 30 -6.766 1.807 -0.825 1.00 0.00 C ATOM 314 CG GLU 30 -7.558 2.611 0.223 1.00 0.00 C ATOM 315 CD GLU 30 -8.259 1.739 1.242 1.00 0.00 C ATOM 316 OE1 GLU 30 -9.424 1.361 0.994 1.00 0.00 O ATOM 317 OE2 GLU 30 -7.657 1.441 2.294 1.00 0.00 O ATOM 318 C GLU 30 -5.314 3.457 -2.029 1.00 0.00 C ATOM 319 O GLU 30 -4.298 3.006 -1.517 1.00 0.00 O ATOM 320 N VAL 31 -5.453 4.759 -2.289 1.00 0.00 N ATOM 322 CA VAL 31 -4.261 5.624 -2.261 1.00 0.00 C ATOM 323 CB VAL 31 -3.952 6.282 -3.679 1.00 0.00 C ATOM 324 CG1 VAL 31 -2.450 6.505 -3.872 1.00 0.00 C ATOM 325 CG2 VAL 31 -4.475 5.408 -4.815 1.00 0.00 C ATOM 326 C VAL 31 -4.094 6.686 -1.168 1.00 0.00 C ATOM 327 O VAL 31 -5.057 7.289 -0.687 1.00 0.00 O ATOM 328 N ARG 32 -2.818 6.828 -0.782 1.00 0.00 N ATOM 330 CA ARG 32 -2.264 7.795 0.172 1.00 0.00 C ATOM 331 CB ARG 32 -1.554 7.068 1.331 1.00 0.00 C ATOM 332 CG ARG 32 -2.470 6.266 2.247 1.00 0.00 C ATOM 333 CD ARG 32 -1.683 5.586 3.357 1.00 0.00 C ATOM 334 NE ARG 32 -2.547 4.809 4.249 1.00 0.00 N ATOM 336 CZ ARG 32 -2.130 4.111 5.305 1.00 0.00 C ATOM 337 NH1 ARG 32 -3.012 3.446 6.039 1.00 0.00 N ATOM 340 NH2 ARG 32 -0.844 4.069 5.640 1.00 0.00 N ATOM 343 C ARG 32 -1.261 8.389 -0.847 1.00 0.00 C ATOM 344 O ARG 32 -0.083 8.006 -0.886 1.00 0.00 O ATOM 345 N CYS 33 -1.822 9.193 -1.763 1.00 0.00 N ATOM 347 CA CYS 33 -1.134 9.829 -2.908 1.00 0.00 C ATOM 348 CB CYS 33 -2.180 10.275 -3.944 1.00 0.00 C ATOM 349 SG CYS 33 -3.691 10.965 -3.236 1.00 0.00 S ATOM 350 C CYS 33 0.008 10.857 -2.776 1.00 0.00 C ATOM 351 O CYS 33 1.170 10.449 -2.683 1.00 0.00 O ATOM 352 N SER 34 -0.317 12.164 -2.816 1.00 0.00 N ATOM 354 CA SER 34 0.617 13.325 -2.743 1.00 0.00 C ATOM 355 CB SER 34 1.546 13.277 -1.504 1.00 0.00 C ATOM 356 OG SER 34 2.657 12.419 -1.702 1.00 0.00 O ATOM 358 C SER 34 1.442 13.558 -4.024 1.00 0.00 C ATOM 359 O SER 34 1.580 14.701 -4.475 1.00 0.00 O ATOM 360 N ASP 35 1.976 12.464 -4.587 1.00 0.00 N ATOM 362 CA ASP 35 2.803 12.473 -5.806 1.00 0.00 C ATOM 363 CB ASP 35 4.214 11.902 -5.495 1.00 0.00 C ATOM 364 CG ASP 35 4.184 10.535 -4.811 1.00 0.00 C ATOM 365 OD1 ASP 35 4.282 9.512 -5.522 1.00 0.00 O ATOM 366 OD2 ASP 35 4.086 10.490 -3.566 1.00 0.00 O ATOM 367 C ASP 35 2.113 11.779 -7.012 1.00 0.00 C ATOM 368 O ASP 35 0.880 11.686 -7.033 1.00 0.00 O ATOM 369 N THR 36 2.903 11.303 -7.990 1.00 0.00 N ATOM 371 CA THR 36 2.420 10.624 -9.216 1.00 0.00 C ATOM 372 CB THR 36 3.507 10.643 -10.335 1.00 0.00 C ATOM 373 OG1 THR 36 4.754 10.171 -9.808 1.00 0.00 O ATOM 375 CG2 THR 36 3.687 12.051 -10.893 1.00 0.00 C ATOM 376 C THR 36 1.932 9.173 -8.998 1.00 0.00 C ATOM 377 O THR 36 2.319 8.537 -8.013 1.00 0.00 O ATOM 378 N LYS 37 1.085 8.677 -9.924 1.00 0.00 N ATOM 380 CA LYS 37 0.462 7.319 -9.942 1.00 0.00 C ATOM 381 CB LYS 37 1.501 6.177 -10.033 1.00 0.00 C ATOM 382 CG LYS 37 2.274 6.125 -11.344 1.00 0.00 C ATOM 383 CD LYS 37 3.275 4.974 -11.352 1.00 0.00 C ATOM 384 CE LYS 37 4.062 4.904 -12.659 1.00 0.00 C ATOM 385 NZ LYS 37 5.011 6.042 -12.847 1.00 0.00 N ATOM 389 C LYS 37 -0.520 7.033 -8.793 1.00 0.00 C ATOM 390 O LYS 37 -0.675 7.863 -7.889 1.00 0.00 O ATOM 391 N TYR 38 -1.170 5.863 -8.850 1.00 0.00 N ATOM 393 CA TYR 38 -2.141 5.412 -7.844 1.00 0.00 C ATOM 394 CB TYR 38 -3.520 5.108 -8.497 1.00 0.00 C ATOM 395 CG TYR 38 -3.520 4.362 -9.846 1.00 0.00 C ATOM 396 CD1 TYR 38 -3.599 5.072 -11.069 1.00 0.00 C ATOM 397 CE1 TYR 38 -3.627 4.389 -12.317 1.00 0.00 C ATOM 398 CD2 TYR 38 -3.470 2.948 -9.903 1.00 0.00 C ATOM 399 CE2 TYR 38 -3.499 2.257 -11.147 1.00 0.00 C ATOM 400 CZ TYR 38 -3.578 2.986 -12.344 1.00 0.00 C ATOM 401 OH TYR 38 -3.604 2.320 -13.548 1.00 0.00 O ATOM 403 C TYR 38 -1.669 4.218 -6.999 1.00 0.00 C ATOM 404 O TYR 38 -1.622 4.325 -5.773 1.00 0.00 O ATOM 405 N THR 39 -1.279 3.114 -7.655 1.00 0.00 N ATOM 407 CA THR 39 -0.845 1.880 -6.974 1.00 0.00 C ATOM 408 CB THR 39 -1.354 0.590 -7.727 1.00 0.00 C ATOM 409 OG1 THR 39 -0.920 -0.591 -7.036 1.00 0.00 O ATOM 411 CG2 THR 39 -0.873 0.542 -9.194 1.00 0.00 C ATOM 412 C THR 39 0.631 1.748 -6.525 1.00 0.00 C ATOM 413 O THR 39 1.522 2.406 -7.076 1.00 0.00 O ATOM 414 N LEU 40 0.839 0.884 -5.518 1.00 0.00 N ATOM 416 CA LEU 40 2.139 0.568 -4.904 1.00 0.00 C ATOM 417 CB LEU 40 1.922 0.261 -3.399 1.00 0.00 C ATOM 418 CG LEU 40 2.992 0.334 -2.280 1.00 0.00 C ATOM 419 CD1 LEU 40 2.283 0.471 -0.943 1.00 0.00 C ATOM 420 CD2 LEU 40 3.932 -0.887 -2.250 1.00 0.00 C ATOM 421 C LEU 40 2.744 -0.658 -5.631 1.00 0.00 C ATOM 422 O LEU 40 3.957 -0.896 -5.555 1.00 0.00 O ATOM 423 N CYS 41 1.881 -1.399 -6.343 1.00 0.00 N ATOM 425 CA CYS 41 2.244 -2.607 -7.107 1.00 0.00 C ATOM 426 CB CYS 41 1.159 -3.679 -6.939 1.00 0.00 C ATOM 427 SG CYS 41 0.889 -4.207 -5.232 1.00 0.00 S ATOM 428 C CYS 41 2.456 -2.310 -8.595 1.00 0.00 C ATOM 429 O CYS 41 3.312 -2.978 -9.213 1.00 0.00 O ATOM 430 OXT CYS 41 1.772 -1.404 -9.119 1.00 0.00 O TER END