####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 334), selected 41 , name T0955TS389_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS389_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.82 1.82 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.82 1.82 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 0.96 2.89 LCS_AVERAGE: 27.78 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 41 41 3 3 4 17 33 36 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 15 41 41 7 16 26 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 15 41 41 7 18 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 15 41 41 7 19 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 15 41 41 11 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 15 41 41 11 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 15 41 41 9 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 15 41 41 7 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 15 41 41 7 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 15 41 41 11 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 15 41 41 11 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 15 41 41 5 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 15 41 41 5 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 15 41 41 4 16 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 15 41 41 4 14 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 15 41 41 4 7 16 29 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 12 41 41 11 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 7 41 41 11 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 7 41 41 7 19 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 7 41 41 5 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 7 41 41 5 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 7 41 41 5 16 27 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 7 41 41 5 16 26 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 5 41 41 3 14 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 10 41 41 11 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 12 41 41 3 10 18 29 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 12 41 41 6 14 27 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 12 41 41 7 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 12 41 41 7 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 12 41 41 11 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 12 41 41 11 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 12 41 41 11 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 12 41 41 11 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 12 41 41 3 14 27 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 12 41 41 3 5 11 18 21 31 38 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 12 41 41 4 12 16 23 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 12 41 41 7 14 26 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 7 41 41 7 19 27 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 7 41 41 7 19 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 6 41 41 7 15 27 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 6 41 41 3 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 75.93 ( 27.78 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 20 28 34 37 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 26.83 48.78 68.29 82.93 90.24 95.12 95.12 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.34 0.65 0.98 1.17 1.32 1.51 1.51 1.67 1.82 1.82 1.82 1.82 1.82 1.82 1.82 1.82 1.82 1.82 1.82 1.82 GDT RMS_ALL_AT 1.87 2.01 1.94 1.93 1.87 1.84 1.84 1.84 1.82 1.82 1.82 1.82 1.82 1.82 1.82 1.82 1.82 1.82 1.82 1.82 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 5.091 0 0.646 0.770 8.346 1.364 0.909 8.346 LGA Q 2 Q 2 2.362 0 0.251 1.212 3.617 45.455 35.152 3.227 LGA E 3 E 3 2.192 0 0.076 0.939 5.027 44.545 25.859 5.027 LGA T 4 T 4 1.407 0 0.067 1.065 3.247 65.909 61.299 3.247 LGA R 5 R 5 0.773 0 0.062 1.027 5.573 90.909 47.107 5.348 LGA K 6 K 6 0.731 0 0.122 1.228 7.964 90.909 48.889 7.964 LGA K 7 K 7 0.721 0 0.117 1.206 4.662 81.818 50.505 4.662 LGA C 8 C 8 0.865 0 0.101 0.772 3.854 81.818 67.273 3.854 LGA T 9 T 9 0.941 0 0.110 1.028 3.460 86.364 68.571 1.009 LGA E 10 E 10 0.615 0 0.131 0.665 3.326 90.909 58.586 3.326 LGA M 11 M 11 0.272 0 0.093 0.893 2.650 100.000 88.636 2.650 LGA K 12 K 12 0.778 0 0.118 0.609 3.957 77.727 52.323 3.957 LGA K 13 K 13 1.162 0 0.139 0.601 4.835 73.636 42.626 3.690 LGA K 14 K 14 1.897 0 0.107 1.002 3.277 45.455 50.101 3.277 LGA F 15 F 15 2.020 0 0.407 0.401 2.528 42.273 46.612 1.737 LGA K 16 K 16 2.913 0 0.701 1.418 5.221 20.909 16.768 5.106 LGA N 17 N 17 0.678 0 0.227 0.407 1.649 74.091 76.364 0.386 LGA C 18 C 18 0.676 0 0.062 0.063 0.856 81.818 81.818 0.856 LGA E 19 E 19 0.868 0 0.298 0.882 3.389 74.091 52.525 3.389 LGA V 20 V 20 0.804 0 0.075 0.092 1.584 70.000 68.052 1.291 LGA R 21 R 21 1.527 0 0.133 1.138 3.231 58.182 43.140 2.798 LGA C 22 C 22 2.172 0 0.102 0.895 4.390 41.364 34.848 4.390 LGA D 23 D 23 2.615 0 0.271 1.032 5.332 30.000 22.045 3.138 LGA E 24 E 24 2.121 0 0.110 0.907 4.186 47.727 27.677 4.057 LGA S 25 S 25 0.621 0 0.157 0.693 3.626 77.727 64.545 3.626 LGA N 26 N 26 2.356 0 0.672 0.729 4.281 43.182 30.227 2.964 LGA H 27 H 27 1.703 0 0.258 1.310 7.982 58.182 27.818 7.982 LGA C 28 C 28 1.434 0 0.140 0.199 1.537 61.818 63.030 1.492 LGA V 29 V 29 1.435 0 0.185 0.155 2.159 65.455 55.584 2.007 LGA E 30 E 30 0.486 0 0.180 0.671 2.795 86.364 77.980 0.264 LGA V 31 V 31 0.788 0 0.086 0.155 1.054 73.636 79.740 0.470 LGA R 32 R 32 0.283 0 0.223 0.629 3.252 86.818 62.975 3.191 LGA C 33 C 33 0.738 0 0.556 0.622 3.097 61.818 68.485 0.730 LGA S 34 S 34 1.685 0 0.431 0.601 3.697 37.727 38.182 2.608 LGA D 35 D 35 4.528 0 0.222 0.813 7.142 9.091 4.545 6.020 LGA T 36 T 36 3.330 0 0.104 0.163 4.791 35.000 22.078 4.791 LGA K 37 K 37 1.502 0 0.045 1.437 6.086 63.182 42.626 6.086 LGA Y 38 Y 38 0.786 0 0.149 1.296 8.569 81.818 37.727 8.569 LGA T 39 T 39 1.088 0 0.075 0.078 1.649 61.818 65.714 0.909 LGA L 40 L 40 1.665 0 0.080 0.960 4.706 54.545 43.409 1.822 LGA C 41 C 41 1.240 1 0.268 0.239 1.582 61.818 54.026 1.456 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 334 99.70 41 41 SUMMARY(RMSD_GDC): 1.820 1.819 2.779 61.885 48.936 30.288 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 40 1.67 82.317 91.046 2.254 LGA_LOCAL RMSD: 1.674 Number of atoms: 40 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.835 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.820 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.877042 * X + -0.110751 * Y + -0.467473 * Z + -0.223438 Y_new = 0.378465 * X + 0.758633 * Y + 0.530320 * Z + 0.228742 Z_new = 0.295907 * X + -0.642036 * Y + 0.707269 * Z + -0.821938 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.407384 -0.300405 -0.737090 [DEG: 23.3414 -17.2120 -42.2322 ] ZXZ: -2.419097 0.785169 2.709720 [DEG: -138.6041 44.9869 155.2555 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS389_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS389_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 40 1.67 91.046 1.82 REMARK ---------------------------------------------------------- MOLECULE T0955TS389_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT none ATOM 1 N SER 1 -4.031 -13.866 1.192 1.00 0.00 N ATOM 2 CA SER 1 -3.988 -12.196 1.046 1.00 0.00 C ATOM 3 C SER 1 -3.029 -11.666 1.941 1.00 0.00 C ATOM 4 O SER 1 -2.615 -10.502 1.843 1.00 0.00 O ATOM 5 CB SER 1 -5.371 -11.598 1.313 1.00 0.00 C ATOM 7 OG SER 1 -5.754 -11.783 2.664 1.00 0.00 O ATOM 8 N GLN 2 -2.606 -12.468 2.868 1.00 0.00 N ATOM 9 CA GLN 2 -1.869 -12.095 3.800 1.00 0.00 C ATOM 10 C GLN 2 -0.410 -11.424 3.202 1.00 0.00 C ATOM 11 O GLN 2 0.052 -10.406 3.737 1.00 0.00 O ATOM 13 CB GLN 2 -1.564 -13.261 4.742 1.00 0.00 C ATOM 14 CD GLN 2 -2.449 -14.949 6.400 1.00 0.00 C ATOM 15 CG GLN 2 -2.756 -13.721 5.566 1.00 0.00 C ATOM 16 OE1 GLN 2 -1.609 -15.769 6.028 1.00 0.00 O ATOM 19 NE2 GLN 2 -3.129 -15.079 7.532 1.00 0.00 N ATOM 20 N GLU 3 0.210 -11.949 2.223 1.00 0.00 N ATOM 21 CA GLU 3 1.298 -11.338 1.862 1.00 0.00 C ATOM 22 C GLU 3 0.907 -9.925 1.329 1.00 0.00 C ATOM 23 O GLU 3 1.728 -8.998 1.386 1.00 0.00 O ATOM 25 CB GLU 3 2.045 -12.154 0.806 1.00 0.00 C ATOM 26 CD GLU 3 3.351 -14.245 0.252 1.00 0.00 C ATOM 27 CG GLU 3 2.658 -13.441 1.335 1.00 0.00 C ATOM 28 OE1 GLU 3 3.042 -14.027 -0.938 1.00 0.00 O ATOM 29 OE2 GLU 3 4.202 -15.092 0.593 1.00 0.00 O ATOM 30 N THR 4 -0.256 -9.713 0.831 1.00 0.00 N ATOM 31 CA THR 4 -0.621 -8.305 0.182 1.00 0.00 C ATOM 32 C THR 4 -0.744 -7.343 1.219 1.00 0.00 C ATOM 33 O THR 4 -0.331 -6.187 1.043 1.00 0.00 O ATOM 35 CB THR 4 -1.918 -8.383 -0.644 1.00 0.00 C ATOM 37 OG1 THR 4 -3.000 -8.797 0.200 1.00 0.00 O ATOM 38 CG2 THR 4 -1.770 -9.391 -1.774 1.00 0.00 C ATOM 39 N ARG 5 -1.231 -7.639 2.238 1.00 0.00 N ATOM 40 CA ARG 5 -1.203 -6.603 3.344 1.00 0.00 C ATOM 41 C ARG 5 0.101 -6.411 3.876 1.00 0.00 C ATOM 42 O ARG 5 0.402 -5.288 4.311 1.00 0.00 O ATOM 44 CB ARG 5 -2.157 -6.998 4.473 1.00 0.00 C ATOM 45 CD ARG 5 -4.516 -7.353 5.252 1.00 0.00 C ATOM 47 NE ARG 5 -5.935 -7.243 4.923 1.00 0.00 N ATOM 48 CG ARG 5 -3.629 -6.898 4.105 1.00 0.00 C ATOM 49 CZ ARG 5 -6.919 -7.683 5.700 1.00 0.00 C ATOM 52 NH1 ARG 5 -8.181 -7.539 5.318 1.00 0.00 N ATOM 55 NH2 ARG 5 -6.639 -8.265 6.858 1.00 0.00 N ATOM 56 N LYS 6 1.032 -7.398 3.932 1.00 0.00 N ATOM 57 CA LYS 6 2.189 -7.016 4.417 1.00 0.00 C ATOM 58 C LYS 6 2.918 -6.155 3.357 1.00 0.00 C ATOM 59 O LYS 6 3.745 -5.313 3.736 1.00 0.00 O ATOM 61 CB LYS 6 3.029 -8.231 4.816 1.00 0.00 C ATOM 62 CD LYS 6 3.384 -10.166 6.375 1.00 0.00 C ATOM 63 CE LYS 6 2.869 -10.900 7.603 1.00 0.00 C ATOM 64 CG LYS 6 2.502 -8.977 6.031 1.00 0.00 C ATOM 68 NZ LYS 6 3.695 -12.097 7.922 1.00 0.00 N ATOM 69 N LYS 7 2.715 -6.273 2.206 1.00 0.00 N ATOM 70 CA LYS 7 3.445 -5.460 1.389 1.00 0.00 C ATOM 71 C LYS 7 2.765 -4.148 1.500 1.00 0.00 C ATOM 72 O LYS 7 3.458 -3.130 1.644 1.00 0.00 O ATOM 74 CB LYS 7 3.483 -6.023 -0.033 1.00 0.00 C ATOM 75 CD LYS 7 5.706 -7.173 0.154 1.00 0.00 C ATOM 76 CE LYS 7 6.406 -6.350 -0.914 1.00 0.00 C ATOM 77 CG LYS 7 4.228 -7.342 -0.159 1.00 0.00 C ATOM 81 NZ LYS 7 7.864 -6.215 -0.644 1.00 0.00 N ATOM 82 N CYS 8 1.456 -4.017 1.452 1.00 0.00 N ATOM 83 CA CYS 8 0.886 -2.934 1.526 1.00 0.00 C ATOM 84 C CYS 8 1.119 -2.137 2.805 1.00 0.00 C ATOM 85 O CYS 8 1.324 -0.918 2.705 1.00 0.00 O ATOM 87 CB CYS 8 -0.626 -3.112 1.372 1.00 0.00 C ATOM 88 SG CYS 8 -1.143 -3.723 -0.249 1.00 0.00 S ATOM 89 N THR 9 1.114 -2.763 4.220 1.00 0.00 N ATOM 90 CA THR 9 1.400 -1.920 5.330 1.00 0.00 C ATOM 91 C THR 9 2.841 -1.517 5.415 1.00 0.00 C ATOM 92 O THR 9 3.146 -0.473 6.013 1.00 0.00 O ATOM 93 CB THR 9 1.011 -2.589 6.662 1.00 0.00 C ATOM 95 OG1 THR 9 1.719 -3.826 6.804 1.00 0.00 O ATOM 96 CG2 THR 9 -0.482 -2.877 6.697 1.00 0.00 C ATOM 97 N GLU 10 3.985 -2.397 4.757 1.00 0.00 N ATOM 98 CA GLU 10 4.991 -1.934 4.597 1.00 0.00 C ATOM 99 C GLU 10 4.951 -0.543 3.714 1.00 0.00 C ATOM 100 O GLU 10 5.673 0.415 4.027 1.00 0.00 O ATOM 101 CB GLU 10 5.932 -2.923 3.906 1.00 0.00 C ATOM 102 CD GLU 10 7.229 -5.087 4.043 1.00 0.00 C ATOM 103 CG GLU 10 6.360 -4.088 4.782 1.00 0.00 C ATOM 104 OE1 GLU 10 7.341 -4.972 2.804 1.00 0.00 O ATOM 105 OE2 GLU 10 7.797 -5.982 4.701 1.00 0.00 O ATOM 106 N MET 11 4.252 -0.466 2.810 1.00 0.00 N ATOM 107 CA MET 11 4.133 0.798 2.070 1.00 0.00 C ATOM 108 C MET 11 3.422 1.785 3.008 1.00 0.00 C ATOM 109 O MET 11 3.899 2.930 3.011 1.00 0.00 O ATOM 111 CB MET 11 3.372 0.583 0.760 1.00 0.00 C ATOM 112 SD MET 11 5.700 0.489 -0.740 1.00 0.00 S ATOM 113 CE MET 11 5.139 1.953 -1.606 1.00 0.00 C ATOM 114 CG MET 11 4.126 -0.250 -0.265 1.00 0.00 C ATOM 115 N LYS 12 2.416 1.623 3.791 1.00 0.00 N ATOM 116 CA LYS 12 2.034 2.847 4.607 1.00 0.00 C ATOM 117 C LYS 12 3.170 3.172 5.620 1.00 0.00 C ATOM 118 O LYS 12 3.685 4.301 5.633 1.00 0.00 O ATOM 120 CB LYS 12 0.706 2.616 5.330 1.00 0.00 C ATOM 121 CD LYS 12 -1.130 3.535 6.774 1.00 0.00 C ATOM 122 CE LYS 12 -1.599 4.718 7.605 1.00 0.00 C ATOM 123 CG LYS 12 0.226 3.807 6.144 1.00 0.00 C ATOM 127 NZ LYS 12 -2.927 4.466 8.229 1.00 0.00 N ATOM 128 N LYS 13 3.559 2.312 6.408 1.00 0.00 N ATOM 129 CA LYS 13 4.699 2.656 7.424 1.00 0.00 C ATOM 130 C LYS 13 6.155 3.050 6.412 1.00 0.00 C ATOM 131 O LYS 13 6.927 3.962 6.740 1.00 0.00 O ATOM 133 CB LYS 13 4.935 1.485 8.380 1.00 0.00 C ATOM 134 CD LYS 13 4.105 0.078 10.285 1.00 0.00 C ATOM 135 CE LYS 13 2.977 -0.150 11.278 1.00 0.00 C ATOM 136 CG LYS 13 3.814 1.266 9.383 1.00 0.00 C ATOM 140 NZ LYS 13 3.229 -1.337 12.141 1.00 0.00 N ATOM 141 N LYS 14 6.359 2.378 5.380 1.00 0.00 N ATOM 142 CA LYS 14 7.560 2.639 4.671 1.00 0.00 C ATOM 143 C LYS 14 7.654 3.926 4.270 1.00 0.00 C ATOM 144 O LYS 14 8.719 4.551 4.383 1.00 0.00 O ATOM 146 CB LYS 14 7.674 1.720 3.453 1.00 0.00 C ATOM 147 CD LYS 14 9.054 0.878 1.533 1.00 0.00 C ATOM 148 CE LYS 14 10.352 1.032 0.758 1.00 0.00 C ATOM 149 CG LYS 14 8.975 1.870 2.683 1.00 0.00 C ATOM 153 NZ LYS 14 10.441 0.069 -0.374 1.00 0.00 N ATOM 154 N PHE 15 6.411 4.594 3.673 1.00 0.00 N ATOM 155 CA PHE 15 6.298 6.108 3.346 1.00 0.00 C ATOM 156 C PHE 15 5.242 6.883 4.315 1.00 0.00 C ATOM 157 O PHE 15 4.202 6.315 4.681 1.00 0.00 O ATOM 158 CB PHE 15 5.886 6.312 1.887 1.00 0.00 C ATOM 159 CG PHE 15 6.930 5.884 0.896 1.00 0.00 C ATOM 160 CZ PHE 15 8.868 5.100 -0.937 1.00 0.00 C ATOM 161 CD1 PHE 15 6.885 4.628 0.319 1.00 0.00 C ATOM 162 CE1 PHE 15 7.847 4.235 -0.593 1.00 0.00 C ATOM 163 CD2 PHE 15 7.959 6.740 0.541 1.00 0.00 C ATOM 164 CE2 PHE 15 8.921 6.346 -0.370 1.00 0.00 C ATOM 165 N LYS 16 5.536 8.308 4.770 1.00 0.00 N ATOM 166 CA LYS 16 4.751 8.772 5.709 1.00 0.00 C ATOM 167 C LYS 16 3.819 9.866 5.002 1.00 0.00 C ATOM 168 O LYS 16 4.188 10.378 3.934 1.00 0.00 O ATOM 169 CB LYS 16 5.576 9.351 6.859 1.00 0.00 C ATOM 170 CD LYS 16 7.147 8.952 8.776 1.00 0.00 C ATOM 171 CE LYS 16 7.950 7.916 9.546 1.00 0.00 C ATOM 172 CG LYS 16 6.380 8.315 7.630 1.00 0.00 C ATOM 176 NZ LYS 16 8.721 8.529 10.664 1.00 0.00 N ATOM 177 N ASN 17 2.841 10.177 5.450 1.00 0.00 N ATOM 178 CA ASN 17 1.970 11.169 4.746 1.00 0.00 C ATOM 179 C ASN 17 1.284 10.539 3.383 1.00 0.00 C ATOM 180 O ASN 17 0.771 11.299 2.549 1.00 0.00 O ATOM 182 CB ASN 17 2.765 12.428 4.397 1.00 0.00 C ATOM 183 CG ASN 17 3.243 13.176 5.628 1.00 0.00 C ATOM 184 OD1 ASN 17 2.458 13.475 6.527 1.00 0.00 O ATOM 187 ND2 ASN 17 4.536 13.476 5.671 1.00 0.00 N ATOM 188 N CYS 18 1.272 9.263 3.173 1.00 0.00 N ATOM 189 CA CYS 18 0.670 8.807 1.877 1.00 0.00 C ATOM 190 C CYS 18 -0.521 7.762 2.343 1.00 0.00 C ATOM 191 O CYS 18 -0.376 7.090 3.376 1.00 0.00 O ATOM 193 CB CYS 18 1.738 8.172 0.984 1.00 0.00 C ATOM 194 SG CYS 18 3.094 9.281 0.535 1.00 0.00 S ATOM 195 N GLU 19 -1.578 7.638 1.662 1.00 0.00 N ATOM 196 CA GLU 19 -2.666 6.582 1.863 1.00 0.00 C ATOM 197 C GLU 19 -2.261 5.315 1.058 1.00 0.00 C ATOM 198 O GLU 19 -1.579 5.390 0.027 1.00 0.00 O ATOM 200 CB GLU 19 -4.027 7.123 1.422 1.00 0.00 C ATOM 201 CD GLU 19 -5.890 8.786 1.801 1.00 0.00 C ATOM 202 CG GLU 19 -4.530 8.290 2.254 1.00 0.00 C ATOM 203 OE1 GLU 19 -6.345 8.363 0.717 1.00 0.00 O ATOM 204 OE2 GLU 19 -6.500 9.596 2.529 1.00 0.00 O ATOM 205 N VAL 20 -2.605 4.370 1.442 1.00 0.00 N ATOM 206 CA VAL 20 -2.230 3.169 0.741 1.00 0.00 C ATOM 207 C VAL 20 -3.569 2.434 0.556 1.00 0.00 C ATOM 208 O VAL 20 -4.247 2.107 1.542 1.00 0.00 O ATOM 210 CB VAL 20 -1.179 2.362 1.525 1.00 0.00 C ATOM 211 CG1 VAL 20 -0.813 1.092 0.774 1.00 0.00 C ATOM 212 CG2 VAL 20 0.059 3.209 1.782 1.00 0.00 C ATOM 213 N ARG 21 -3.939 2.187 -0.518 1.00 0.00 N ATOM 214 CA ARG 21 -4.864 1.464 -0.808 1.00 0.00 C ATOM 215 C ARG 21 -4.314 0.126 -1.219 1.00 0.00 C ATOM 216 O ARG 21 -3.278 0.067 -1.899 1.00 0.00 O ATOM 218 CB ARG 21 -5.705 2.090 -1.923 1.00 0.00 C ATOM 219 CD ARG 21 -7.398 3.104 -0.372 1.00 0.00 C ATOM 221 NE ARG 21 -8.384 2.079 -0.712 1.00 0.00 N ATOM 222 CG ARG 21 -6.429 3.362 -1.514 1.00 0.00 C ATOM 223 CZ ARG 21 -9.510 2.318 -1.376 1.00 0.00 C ATOM 226 NH1 ARG 21 -10.346 1.324 -1.641 1.00 0.00 N ATOM 229 NH2 ARG 21 -9.796 3.549 -1.775 1.00 0.00 N ATOM 230 N CYS 22 -5.036 -1.187 -0.795 1.00 0.00 N ATOM 231 CA CYS 22 -4.264 -2.420 -1.081 1.00 0.00 C ATOM 232 C CYS 22 -5.035 -3.336 -1.829 1.00 0.00 C ATOM 233 O CYS 22 -6.147 -3.699 -1.419 1.00 0.00 O ATOM 234 CB CYS 22 -3.790 -3.070 0.221 1.00 0.00 C ATOM 235 SG CYS 22 -2.808 -4.570 -0.007 1.00 0.00 S ATOM 236 N ASP 23 -4.576 -3.788 -2.933 1.00 0.00 N ATOM 237 CA ASP 23 -5.525 -4.446 -3.882 1.00 0.00 C ATOM 238 C ASP 23 -5.917 -5.838 -3.191 1.00 0.00 C ATOM 239 O ASP 23 -5.067 -6.734 -3.081 1.00 0.00 O ATOM 241 CB ASP 23 -4.874 -4.619 -5.256 1.00 0.00 C ATOM 242 CG ASP 23 -5.827 -5.204 -6.281 1.00 0.00 C ATOM 243 OD1 ASP 23 -6.914 -5.674 -5.882 1.00 0.00 O ATOM 244 OD2 ASP 23 -5.486 -5.192 -7.482 1.00 0.00 O ATOM 245 N GLU 24 -7.241 -6.052 -2.703 1.00 0.00 N ATOM 246 CA GLU 24 -7.579 -7.280 -2.192 1.00 0.00 C ATOM 247 C GLU 24 -7.920 -8.068 -3.303 1.00 0.00 C ATOM 248 O GLU 24 -7.746 -9.296 -3.300 1.00 0.00 O ATOM 250 CB GLU 24 -8.720 -7.143 -1.181 1.00 0.00 C ATOM 251 CD GLU 24 -7.265 -7.099 0.884 1.00 0.00 C ATOM 252 CG GLU 24 -8.341 -6.391 0.084 1.00 0.00 C ATOM 253 OE1 GLU 24 -7.067 -8.313 0.667 1.00 0.00 O ATOM 254 OE2 GLU 24 -6.620 -6.440 1.725 1.00 0.00 O ATOM 255 N SER 25 -8.355 -7.547 -4.190 1.00 0.00 N ATOM 256 CA SER 25 -8.681 -8.638 -5.190 1.00 0.00 C ATOM 257 C SER 25 -7.289 -9.348 -5.769 1.00 0.00 C ATOM 258 O SER 25 -7.404 -10.459 -6.309 1.00 0.00 O ATOM 260 CB SER 25 -9.508 -8.075 -6.347 1.00 0.00 C ATOM 262 OG SER 25 -8.740 -7.185 -7.138 1.00 0.00 O ATOM 263 N ASN 26 -6.053 -8.825 -5.704 1.00 0.00 N ATOM 264 CA ASN 26 -4.985 -9.446 -6.147 1.00 0.00 C ATOM 265 C ASN 26 -3.653 -8.696 -5.453 1.00 0.00 C ATOM 266 O ASN 26 -3.855 -7.773 -4.648 1.00 0.00 O ATOM 268 CB ASN 26 -4.948 -9.421 -7.676 1.00 0.00 C ATOM 269 CG ASN 26 -4.927 -8.013 -8.236 1.00 0.00 C ATOM 270 OD1 ASN 26 -4.094 -7.193 -7.849 1.00 0.00 O ATOM 273 ND2 ASN 26 -5.846 -7.728 -9.152 1.00 0.00 N ATOM 274 N HIS 27 -2.416 -9.027 -5.710 1.00 0.00 N ATOM 275 CA HIS 27 -1.143 -8.396 -4.955 1.00 0.00 C ATOM 276 C HIS 27 -0.901 -7.038 -5.344 1.00 0.00 C ATOM 277 O HIS 27 -0.142 -6.416 -4.586 1.00 0.00 O ATOM 279 CB HIS 27 0.108 -9.235 -5.222 1.00 0.00 C ATOM 280 CG HIS 27 0.566 -9.200 -6.647 1.00 0.00 C ATOM 281 ND1 HIS 27 0.015 -9.999 -7.625 1.00 0.00 N ATOM 282 CE1 HIS 27 0.628 -9.745 -8.794 1.00 0.00 C ATOM 283 CD2 HIS 27 1.568 -8.458 -7.397 1.00 0.00 C ATOM 285 NE2 HIS 27 1.561 -8.821 -8.666 1.00 0.00 N ATOM 286 N CYS 28 -1.356 -6.319 -6.390 1.00 0.00 N ATOM 287 CA CYS 28 -0.704 -5.177 -6.511 1.00 0.00 C ATOM 288 C CYS 28 -1.025 -4.070 -5.256 1.00 0.00 C ATOM 289 O CYS 28 -2.080 -4.134 -4.607 1.00 0.00 O ATOM 291 CB CYS 28 -1.034 -4.511 -7.848 1.00 0.00 C ATOM 292 SG CYS 28 -0.495 -5.444 -9.300 1.00 0.00 S ATOM 293 N VAL 29 -0.145 -3.163 -4.996 1.00 0.00 N ATOM 294 CA VAL 29 -0.045 -2.024 -3.869 1.00 0.00 C ATOM 295 C VAL 29 -0.312 -0.371 -4.449 1.00 0.00 C ATOM 296 O VAL 29 0.439 0.176 -5.270 1.00 0.00 O ATOM 298 CB VAL 29 1.320 -2.053 -3.157 1.00 0.00 C ATOM 299 CG1 VAL 29 1.404 -0.943 -2.121 1.00 0.00 C ATOM 300 CG2 VAL 29 1.556 -3.409 -2.510 1.00 0.00 C ATOM 301 N GLU 30 -1.435 0.272 -3.912 1.00 0.00 N ATOM 302 CA GLU 30 -1.802 1.538 -4.363 1.00 0.00 C ATOM 303 C GLU 30 -1.291 2.537 -3.533 1.00 0.00 C ATOM 304 O GLU 30 -1.896 2.702 -2.463 1.00 0.00 O ATOM 306 CB GLU 30 -3.326 1.655 -4.448 1.00 0.00 C ATOM 307 CD GLU 30 -5.328 3.058 -5.079 1.00 0.00 C ATOM 308 CG GLU 30 -3.816 2.986 -4.994 1.00 0.00 C ATOM 309 OE1 GLU 30 -5.987 2.019 -4.863 1.00 0.00 O ATOM 310 OE2 GLU 30 -5.854 4.154 -5.361 1.00 0.00 O ATOM 311 N VAL 31 -0.185 3.383 -3.743 1.00 0.00 N ATOM 312 CA VAL 31 0.037 4.446 -2.718 1.00 0.00 C ATOM 313 C VAL 31 -0.388 5.734 -3.116 1.00 0.00 C ATOM 314 O VAL 31 0.123 6.197 -4.147 1.00 0.00 O ATOM 316 CB VAL 31 1.520 4.539 -2.313 1.00 0.00 C ATOM 317 CG1 VAL 31 1.728 5.654 -1.300 1.00 0.00 C ATOM 318 CG2 VAL 31 2.005 3.210 -1.755 1.00 0.00 C ATOM 319 N ARG 32 -1.343 6.551 -2.458 1.00 0.00 N ATOM 320 CA ARG 32 -2.081 7.933 -3.018 1.00 0.00 C ATOM 321 C ARG 32 -1.355 8.885 -2.224 1.00 0.00 C ATOM 322 O ARG 32 -1.517 8.864 -0.994 1.00 0.00 O ATOM 324 CB ARG 32 -3.592 7.862 -2.793 1.00 0.00 C ATOM 325 CD ARG 32 -5.864 8.826 -3.251 1.00 0.00 C ATOM 327 NE ARG 32 -6.303 8.910 -1.860 1.00 0.00 N ATOM 328 CG ARG 32 -4.364 9.029 -3.388 1.00 0.00 C ATOM 329 CZ ARG 32 -7.525 8.594 -1.442 1.00 0.00 C ATOM 332 NH1 ARG 32 -7.835 8.702 -0.157 1.00 0.00 N ATOM 335 NH2 ARG 32 -8.433 8.169 -2.309 1.00 0.00 N ATOM 336 N CYS 33 -0.419 9.897 -2.792 1.00 0.00 N ATOM 337 CA CYS 33 0.300 10.934 -1.893 1.00 0.00 C ATOM 338 C CYS 33 -0.142 12.192 -2.256 1.00 0.00 C ATOM 339 O CYS 33 -0.309 12.404 -3.466 1.00 0.00 O ATOM 341 CB CYS 33 1.819 10.804 -2.033 1.00 0.00 C ATOM 342 SG CYS 33 2.479 9.195 -1.542 1.00 0.00 S ATOM 343 N SER 34 -0.384 13.117 -1.487 1.00 0.00 N ATOM 344 CA SER 34 -0.967 14.150 -2.060 1.00 0.00 C ATOM 345 C SER 34 -2.351 13.550 -2.591 1.00 0.00 C ATOM 346 O SER 34 -2.826 12.515 -2.101 1.00 0.00 O ATOM 348 CB SER 34 -0.074 14.726 -3.160 1.00 0.00 C ATOM 350 OG SER 34 -0.559 15.981 -3.604 1.00 0.00 O ATOM 351 N ASP 35 -2.939 14.149 -3.507 1.00 0.00 N ATOM 352 CA ASP 35 -4.110 13.375 -4.096 1.00 0.00 C ATOM 353 C ASP 35 -3.598 12.308 -5.293 1.00 0.00 C ATOM 354 O ASP 35 -4.452 11.732 -5.982 1.00 0.00 O ATOM 356 CB ASP 35 -5.155 14.336 -4.666 1.00 0.00 C ATOM 357 CG ASP 35 -4.629 15.142 -5.838 1.00 0.00 C ATOM 358 OD1 ASP 35 -3.440 14.978 -6.185 1.00 0.00 O ATOM 359 OD2 ASP 35 -5.406 15.936 -6.409 1.00 0.00 O ATOM 360 N THR 36 -2.340 12.062 -5.524 1.00 0.00 N ATOM 361 CA THR 36 -1.951 11.379 -6.958 1.00 0.00 C ATOM 362 C THR 36 -1.675 9.846 -6.699 1.00 0.00 C ATOM 363 O THR 36 -1.021 9.515 -5.699 1.00 0.00 O ATOM 365 CB THR 36 -0.731 12.066 -7.598 1.00 0.00 C ATOM 367 OG1 THR 36 -1.034 13.443 -7.853 1.00 0.00 O ATOM 368 CG2 THR 36 -0.371 11.396 -8.915 1.00 0.00 C ATOM 369 N LYS 37 -2.100 8.939 -7.484 1.00 0.00 N ATOM 370 CA LYS 37 -2.052 7.549 -7.218 1.00 0.00 C ATOM 371 C LYS 37 -0.913 6.856 -7.917 1.00 0.00 C ATOM 372 O LYS 37 -0.700 6.997 -9.130 1.00 0.00 O ATOM 374 CB LYS 37 -3.367 6.880 -7.622 1.00 0.00 C ATOM 375 CD LYS 37 -5.841 6.639 -7.271 1.00 0.00 C ATOM 376 CE LYS 37 -7.051 7.127 -6.491 1.00 0.00 C ATOM 377 CG LYS 37 -4.570 7.336 -6.813 1.00 0.00 C ATOM 381 NZ LYS 37 -8.310 6.486 -6.962 1.00 0.00 N ATOM 382 N TYR 38 -0.208 6.142 -7.205 1.00 0.00 N ATOM 383 CA TYR 38 0.805 5.258 -7.990 1.00 0.00 C ATOM 384 C TYR 38 0.634 3.706 -7.577 1.00 0.00 C ATOM 385 O TYR 38 0.717 3.325 -6.400 1.00 0.00 O ATOM 387 CB TYR 38 2.238 5.726 -7.731 1.00 0.00 C ATOM 388 CG TYR 38 2.509 7.145 -8.179 1.00 0.00 C ATOM 390 OH TYR 38 3.250 11.051 -9.397 1.00 0.00 O ATOM 391 CZ TYR 38 3.006 9.758 -8.995 1.00 0.00 C ATOM 392 CD1 TYR 38 2.213 8.221 -7.352 1.00 0.00 C ATOM 393 CE1 TYR 38 2.458 9.521 -7.754 1.00 0.00 C ATOM 394 CD2 TYR 38 3.061 7.403 -9.427 1.00 0.00 C ATOM 395 CE2 TYR 38 3.313 8.696 -9.846 1.00 0.00 C ATOM 396 N THR 39 0.377 2.792 -8.661 1.00 0.00 N ATOM 397 CA THR 39 0.175 1.367 -8.298 1.00 0.00 C ATOM 398 C THR 39 1.507 0.679 -8.554 1.00 0.00 C ATOM 399 O THR 39 1.993 0.642 -9.694 1.00 0.00 O ATOM 401 CB THR 39 -0.972 0.735 -9.108 1.00 0.00 C ATOM 403 OG1 THR 39 -2.196 1.425 -8.827 1.00 0.00 O ATOM 404 CG2 THR 39 -1.143 -0.730 -8.736 1.00 0.00 C ATOM 405 N LEU 40 2.157 0.100 -7.499 1.00 0.00 N ATOM 406 CA LEU 40 3.339 -0.807 -7.601 1.00 0.00 C ATOM 407 C LEU 40 2.939 -2.234 -7.274 1.00 0.00 C ATOM 408 O LEU 40 2.343 -2.497 -6.218 1.00 0.00 O ATOM 410 CB LEU 40 4.456 -0.338 -6.668 1.00 0.00 C ATOM 411 CG LEU 40 4.998 1.072 -6.915 1.00 0.00 C ATOM 412 CD1 LEU 40 6.035 1.440 -5.865 1.00 0.00 C ATOM 413 CD2 LEU 40 5.596 1.182 -8.308 1.00 0.00 C ATOM 414 N CYS 41 3.182 -3.017 -7.978 1.00 0.00 N ATOM 415 CA CYS 41 2.787 -4.486 -7.595 1.00 0.00 C ATOM 416 C CYS 41 4.044 -5.399 -6.596 1.00 0.00 C ATOM 417 O CYS 41 3.714 -5.983 -5.566 1.00 0.00 O ATOM 419 CB CYS 41 2.498 -5.308 -8.852 1.00 0.00 C ATOM 420 SG CYS 41 1.111 -4.702 -9.839 1.00 0.00 S TER END