####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 334), selected 41 , name T0955TS401_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS401_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 15 - 36 4.87 16.62 LCS_AVERAGE: 51.10 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 1 - 16 1.33 16.59 LCS_AVERAGE: 27.13 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 1 - 15 0.98 16.71 LCS_AVERAGE: 20.82 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 15 16 20 0 6 9 14 16 16 17 18 18 19 20 20 20 21 22 23 24 25 26 26 LCS_GDT Q 2 Q 2 15 16 20 10 13 15 16 16 16 17 18 18 19 20 20 20 21 22 23 24 25 26 26 LCS_GDT E 3 E 3 15 16 20 10 13 15 16 16 16 17 18 18 19 20 20 20 21 22 23 24 25 26 26 LCS_GDT T 4 T 4 15 16 20 10 13 15 16 16 16 17 18 18 19 20 20 20 21 22 23 24 25 26 26 LCS_GDT R 5 R 5 15 16 20 10 13 15 16 16 16 17 18 18 19 20 20 20 21 22 23 24 25 26 26 LCS_GDT K 6 K 6 15 16 20 10 13 15 16 16 16 17 18 18 19 20 20 20 21 22 23 24 25 26 26 LCS_GDT K 7 K 7 15 16 20 10 13 15 16 16 16 17 18 18 19 20 20 20 21 22 23 24 25 26 26 LCS_GDT C 8 C 8 15 16 20 10 13 15 16 16 16 17 18 18 19 20 20 20 21 22 23 24 25 26 26 LCS_GDT T 9 T 9 15 16 20 10 13 15 16 16 16 17 18 18 19 20 20 20 21 22 24 26 26 27 27 LCS_GDT E 10 E 10 15 16 20 10 13 15 16 16 16 17 18 18 19 20 20 20 22 24 25 26 26 27 28 LCS_GDT M 11 M 11 15 16 20 10 13 15 16 16 16 17 18 18 19 20 20 21 23 24 25 26 27 29 30 LCS_GDT K 12 K 12 15 16 20 5 13 15 16 16 16 17 18 18 19 20 20 21 23 24 25 26 28 29 30 LCS_GDT K 13 K 13 15 16 20 8 13 15 16 16 16 17 18 18 19 20 20 21 23 24 25 26 28 29 30 LCS_GDT K 14 K 14 15 16 20 5 13 15 16 16 16 17 18 18 19 20 20 21 23 24 25 26 28 29 30 LCS_GDT F 15 F 15 15 16 22 4 12 15 16 16 16 17 18 18 19 20 20 20 23 24 25 26 28 29 30 LCS_GDT K 16 K 16 8 16 22 4 5 8 16 16 16 17 18 18 19 20 20 20 21 24 25 26 28 29 30 LCS_GDT N 17 N 17 5 9 22 4 4 5 5 7 9 13 17 18 19 20 20 20 21 22 23 24 28 28 30 LCS_GDT C 18 C 18 5 7 22 4 4 5 5 7 9 13 17 18 19 20 20 20 21 22 23 26 28 29 30 LCS_GDT E 19 E 19 5 7 22 3 4 5 7 7 8 9 11 13 15 16 19 20 21 22 23 24 27 27 30 LCS_GDT V 20 V 20 5 7 22 3 4 5 7 7 7 9 11 12 14 17 19 20 21 22 23 26 28 29 30 LCS_GDT R 21 R 21 5 7 22 3 4 5 7 7 7 9 11 12 14 17 19 20 21 22 23 26 28 29 30 LCS_GDT C 22 C 22 5 7 22 0 4 5 7 7 9 9 11 14 15 17 19 20 21 24 25 26 28 29 30 LCS_GDT D 23 D 23 5 7 22 3 4 5 7 7 9 9 11 14 15 17 19 20 23 24 25 26 28 29 30 LCS_GDT E 24 E 24 5 9 22 3 4 5 7 8 10 11 13 15 16 17 19 21 23 24 25 26 28 29 30 LCS_GDT S 25 S 25 5 10 22 3 4 7 7 9 10 11 13 15 16 17 19 21 23 24 25 26 28 29 30 LCS_GDT N 26 N 26 4 10 22 3 6 7 8 10 10 11 13 15 16 17 19 21 23 24 25 26 28 29 30 LCS_GDT H 27 H 27 4 10 22 3 4 4 8 10 10 11 13 15 16 17 19 21 23 24 25 26 28 29 30 LCS_GDT C 28 C 28 5 10 22 3 6 7 8 10 10 11 13 15 16 17 19 21 23 24 25 26 28 29 30 LCS_GDT V 29 V 29 5 10 22 3 6 7 8 10 10 11 13 15 16 17 19 21 23 24 25 26 28 29 30 LCS_GDT E 30 E 30 5 10 22 3 6 7 8 10 10 11 13 15 16 17 19 21 23 24 25 26 28 29 30 LCS_GDT V 31 V 31 5 10 22 3 6 7 8 10 10 11 13 15 16 17 19 21 23 24 25 26 28 29 30 LCS_GDT R 32 R 32 5 10 22 3 6 7 8 10 10 11 13 15 16 17 19 21 23 24 25 26 28 29 30 LCS_GDT C 33 C 33 4 10 22 3 4 5 6 10 10 11 13 15 16 17 19 21 23 24 25 26 28 29 30 LCS_GDT S 34 S 34 4 10 22 3 4 5 6 9 10 11 13 15 16 17 19 21 23 24 25 26 28 29 30 LCS_GDT D 35 D 35 3 10 22 3 6 7 8 10 10 11 13 15 16 17 19 21 23 24 25 26 28 29 30 LCS_GDT T 36 T 36 3 5 22 3 3 3 3 3 16 16 17 17 17 19 19 21 23 24 25 26 28 29 30 LCS_GDT K 37 K 37 5 5 19 3 4 5 7 15 16 17 18 18 18 20 20 20 22 24 25 26 27 29 30 LCS_GDT Y 38 Y 38 5 5 19 3 13 15 16 16 16 17 18 18 19 20 20 21 23 24 25 26 28 29 30 LCS_GDT T 39 T 39 5 5 19 3 4 5 7 7 7 12 14 17 18 19 20 21 23 24 25 26 28 29 30 LCS_GDT L 40 L 40 5 5 19 3 4 5 7 7 7 7 8 11 14 16 19 21 23 24 25 26 28 29 30 LCS_GDT C 41 C 41 5 5 19 3 4 5 7 7 7 7 8 8 13 14 19 21 23 24 25 26 28 29 30 LCS_AVERAGE LCS_A: 33.02 ( 20.82 27.13 51.10 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 13 15 16 16 16 17 18 18 19 20 20 21 23 24 25 26 28 29 30 GDT PERCENT_AT 24.39 31.71 36.59 39.02 39.02 39.02 41.46 43.90 43.90 46.34 48.78 48.78 51.22 56.10 58.54 60.98 63.41 68.29 70.73 73.17 GDT RMS_LOCAL 0.21 0.54 0.70 1.09 1.06 1.06 1.34 1.65 1.65 2.72 2.91 2.91 4.58 4.83 5.00 5.21 5.40 5.93 6.04 6.24 GDT RMS_ALL_AT 17.03 16.73 16.64 16.50 16.69 16.69 16.55 16.52 16.52 15.87 15.97 15.97 13.33 13.53 13.66 13.90 13.36 14.90 14.34 14.58 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: F 15 F 15 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: D 35 D 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.528 0 0.486 0.899 3.662 42.727 36.061 3.123 LGA Q 2 Q 2 0.975 0 0.377 1.350 6.856 77.727 42.222 6.144 LGA E 3 E 3 0.820 0 0.038 1.514 6.937 81.818 49.697 5.634 LGA T 4 T 4 0.583 0 0.032 1.031 2.459 86.364 71.948 2.321 LGA R 5 R 5 0.587 0 0.038 1.063 3.380 81.818 75.537 2.282 LGA K 6 K 6 0.619 0 0.045 0.704 2.156 81.818 72.121 1.751 LGA K 7 K 7 0.625 0 0.061 0.649 1.229 81.818 82.020 0.449 LGA C 8 C 8 0.684 0 0.052 0.792 3.013 77.727 68.485 3.013 LGA T 9 T 9 1.038 0 0.011 0.212 1.272 69.545 67.792 1.006 LGA E 10 E 10 0.975 0 0.045 0.967 5.278 73.636 45.455 5.045 LGA M 11 M 11 1.199 0 0.066 1.436 7.947 73.636 45.455 7.947 LGA K 12 K 12 0.923 0 0.060 0.657 1.912 82.273 69.697 1.721 LGA K 13 K 13 0.203 0 0.020 0.620 1.274 90.909 84.242 1.146 LGA K 14 K 14 0.769 0 0.105 0.612 4.796 90.909 57.172 4.796 LGA F 15 F 15 1.245 0 0.473 1.284 9.541 48.636 21.488 9.541 LGA K 16 K 16 3.654 0 0.135 0.938 7.301 12.273 11.717 5.247 LGA N 17 N 17 8.923 0 0.038 0.527 11.700 0.000 0.000 11.083 LGA C 18 C 18 9.304 0 0.692 0.650 11.115 0.000 0.000 6.687 LGA E 19 E 19 13.351 0 0.541 1.068 17.209 0.000 0.000 13.799 LGA V 20 V 20 16.950 0 0.206 0.187 19.213 0.000 0.000 17.803 LGA R 21 R 21 22.758 0 0.259 1.552 25.955 0.000 0.000 24.928 LGA C 22 C 22 27.473 0 0.329 0.982 30.545 0.000 0.000 27.183 LGA D 23 D 23 33.159 0 0.318 0.703 35.625 0.000 0.000 31.891 LGA E 24 E 24 38.295 0 0.484 0.573 41.318 0.000 0.000 41.318 LGA S 25 S 25 41.491 0 0.032 0.079 44.705 0.000 0.000 44.705 LGA N 26 N 26 35.285 0 0.480 0.887 37.364 0.000 0.000 30.372 LGA H 27 H 27 30.718 0 0.044 1.025 36.556 0.000 0.000 36.556 LGA C 28 C 28 25.433 0 0.455 0.423 28.584 0.000 0.000 28.584 LGA V 29 V 29 19.973 0 0.636 1.010 21.834 0.000 0.000 17.783 LGA E 30 E 30 18.133 0 0.565 1.161 24.879 0.000 0.000 24.717 LGA V 31 V 31 12.964 0 0.053 0.195 14.472 0.000 0.000 9.623 LGA R 32 R 32 13.797 0 0.249 1.364 23.266 0.000 0.000 22.975 LGA C 33 C 33 10.221 0 0.548 1.024 11.042 0.000 0.000 5.828 LGA S 34 S 34 12.899 0 0.536 0.846 14.952 0.000 0.000 14.952 LGA D 35 D 35 12.400 0 0.288 1.105 14.910 0.000 0.000 14.686 LGA T 36 T 36 7.402 0 0.585 0.675 10.514 0.000 0.000 10.514 LGA K 37 K 37 3.659 0 0.637 1.574 5.358 32.273 16.364 4.021 LGA Y 38 Y 38 2.352 0 0.140 1.038 11.167 31.364 12.121 11.167 LGA T 39 T 39 8.435 0 0.054 0.070 12.792 0.000 0.000 9.160 LGA L 40 L 40 12.097 0 0.397 0.926 14.956 0.000 0.000 8.343 LGA C 41 C 41 18.057 1 0.516 0.905 20.860 0.000 0.000 19.877 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 334 99.70 41 41 SUMMARY(RMSD_GDC): 11.906 11.721 12.730 29.690 22.673 11.042 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 18 1.65 43.902 39.323 1.031 LGA_LOCAL RMSD: 1.645 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.517 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 11.906 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.768662 * X + 0.060806 * Y + -0.636758 * Z + -21.021828 Y_new = 0.613546 * X + 0.211420 * Y + 0.760831 * Z + -12.114705 Z_new = 0.180886 * X + -0.975502 * Y + 0.125203 * Z + -42.701061 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.673642 -0.181887 -1.443147 [DEG: 38.5969 -10.4214 -82.6862 ] ZXZ: -2.444738 1.445264 2.958246 [DEG: -140.0732 82.8075 169.4950 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS401_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS401_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 18 1.65 39.323 11.91 REMARK ---------------------------------------------------------- MOLECULE T0955TS401_1 PFRMAT TS TARGET T0955 MODEL 1 REFINED PARENT N/A ATOM 1 N SER 1 2.378 -16.164 2.035 1.00 6.10 ATOM 2 CA SER 1 0.994 -16.142 1.490 1.00 6.10 ATOM 3 C SER 1 0.672 -14.815 0.784 1.00 6.10 ATOM 4 O SER 1 0.806 -14.727 -0.438 1.00 6.10 ATOM 5 CB SER 1 -0.063 -16.514 2.548 1.00 6.40 ATOM 6 OG SER 1 -1.371 -16.537 1.983 1.00 6.40 ATOM 7 N GLN 2 0.254 -13.771 1.518 1.00 4.80 ATOM 8 CA GLN 2 -0.294 -12.523 0.960 1.00 4.80 ATOM 9 C GLN 2 0.770 -11.423 0.796 1.00 4.80 ATOM 10 O GLN 2 0.904 -10.532 1.637 1.00 4.80 ATOM 11 CB GLN 2 -1.477 -12.054 1.832 1.00 5.80 ATOM 12 CG GLN 2 -2.619 -13.075 1.968 1.00 5.80 ATOM 13 CD GLN 2 -3.204 -13.504 0.624 1.00 5.80 ATOM 14 OE1 GLN 2 -3.700 -12.700 -0.157 1.00 5.80 ATOM 15 NE2 GLN 2 -3.171 -14.779 0.301 1.00 5.80 ATOM 16 N GLU 3 1.498 -11.438 -0.324 1.00 4.20 ATOM 17 CA GLU 3 2.480 -10.392 -0.665 1.00 4.20 ATOM 18 C GLU 3 1.822 -9.006 -0.817 1.00 4.20 ATOM 19 O GLU 3 2.398 -7.997 -0.417 1.00 4.20 ATOM 20 CB GLU 3 3.225 -10.801 -1.949 1.00 4.90 ATOM 21 CG GLU 3 4.408 -9.889 -2.323 1.00 4.90 ATOM 22 CD GLU 3 5.554 -9.876 -1.286 1.00 4.90 ATOM 23 OE1 GLU 3 5.757 -10.879 -0.557 1.00 4.90 ATOM 24 OE2 GLU 3 6.294 -8.865 -1.221 1.00 4.90 ATOM 25 N THR 4 0.578 -8.952 -1.313 1.00 4.20 ATOM 26 CA THR 4 -0.211 -7.706 -1.399 1.00 4.20 ATOM 27 C THR 4 -0.496 -7.130 -0.008 1.00 4.20 ATOM 28 O THR 4 -0.240 -5.950 0.226 1.00 4.20 ATOM 29 CB THR 4 -1.515 -7.929 -2.192 1.00 4.90 ATOM 30 OG1 THR 4 -1.210 -8.188 -3.550 1.00 4.90 ATOM 31 CG2 THR 4 -2.459 -6.723 -2.189 1.00 4.90 ATOM 32 N ARG 5 -0.951 -7.953 0.954 1.00 3.60 ATOM 33 CA ARG 5 -1.199 -7.493 2.338 1.00 3.60 ATOM 34 C ARG 5 0.095 -7.081 3.044 1.00 3.60 ATOM 35 O ARG 5 0.100 -6.056 3.722 1.00 3.60 ATOM 36 CB ARG 5 -1.981 -8.537 3.155 1.00 5.30 ATOM 37 CG ARG 5 -3.406 -8.738 2.610 1.00 5.30 ATOM 38 CD ARG 5 -4.249 -9.616 3.543 1.00 5.30 ATOM 39 NE ARG 5 -5.622 -9.776 3.024 1.00 5.30 ATOM 40 CZ ARG 5 -6.651 -10.325 3.651 1.00 5.30 ATOM 41 NH1 ARG 5 -7.826 -10.351 3.089 1.00 5.30 ATOM 42 NH2 ARG 5 -6.541 -10.853 4.838 1.00 5.30 ATOM 43 N LYS 6 1.210 -7.790 2.808 1.00 3.00 ATOM 44 CA LYS 6 2.555 -7.379 3.263 1.00 3.00 ATOM 45 C LYS 6 2.915 -5.983 2.739 1.00 3.00 ATOM 46 O LYS 6 3.238 -5.103 3.533 1.00 3.00 ATOM 47 CB LYS 6 3.593 -8.444 2.857 1.00 4.10 ATOM 48 CG LYS 6 5.001 -8.135 3.395 1.00 4.10 ATOM 49 CD LYS 6 6.007 -9.203 2.944 1.00 4.10 ATOM 50 CE LYS 6 7.412 -8.875 3.467 1.00 4.10 ATOM 51 NZ LYS 6 8.410 -9.888 3.028 1.00 4.10 ATOM 52 N LYS 7 2.782 -5.743 1.429 1.00 3.10 ATOM 53 CA LYS 7 3.047 -4.432 0.803 1.00 3.10 ATOM 54 C LYS 7 2.133 -3.319 1.331 1.00 3.10 ATOM 55 O LYS 7 2.629 -2.236 1.621 1.00 3.10 ATOM 56 CB LYS 7 2.966 -4.554 -0.730 1.00 4.50 ATOM 57 CG LYS 7 4.204 -5.269 -1.296 1.00 4.50 ATOM 58 CD LYS 7 4.103 -5.439 -2.818 1.00 4.50 ATOM 59 CE LYS 7 5.381 -6.097 -3.357 1.00 4.50 ATOM 60 NZ LYS 7 5.350 -6.233 -4.839 1.00 4.50 ATOM 61 N CYS 8 0.840 -3.578 1.544 1.00 3.00 ATOM 62 CA CYS 8 -0.083 -2.608 2.155 1.00 3.00 ATOM 63 C CYS 8 0.268 -2.282 3.623 1.00 3.00 ATOM 64 O CYS 8 0.216 -1.117 4.021 1.00 3.00 ATOM 65 CB CYS 8 -1.521 -3.130 2.031 1.00 3.50 ATOM 66 SG CYS 8 -2.015 -3.166 0.280 1.00 3.50 ATOM 67 N THR 9 0.683 -3.277 4.415 1.00 2.80 ATOM 68 CA THR 9 1.182 -3.085 5.793 1.00 2.80 ATOM 69 C THR 9 2.482 -2.269 5.823 1.00 2.80 ATOM 70 O THR 9 2.623 -1.364 6.645 1.00 2.80 ATOM 71 CB THR 9 1.350 -4.453 6.486 1.00 3.20 ATOM 72 OG1 THR 9 0.065 -4.967 6.785 1.00 3.20 ATOM 73 CG2 THR 9 2.125 -4.414 7.806 1.00 3.20 ATOM 74 N GLU 10 3.415 -2.527 4.901 1.00 2.90 ATOM 75 CA GLU 10 4.649 -1.741 4.759 1.00 2.90 ATOM 76 C GLU 10 4.402 -0.325 4.208 1.00 2.90 ATOM 77 O GLU 10 5.078 0.606 4.631 1.00 2.90 ATOM 78 CB GLU 10 5.663 -2.498 3.883 1.00 3.90 ATOM 79 CG GLU 10 6.214 -3.778 4.540 1.00 3.90 ATOM 80 CD GLU 10 7.036 -3.491 5.812 1.00 3.90 ATOM 81 OE1 GLU 10 8.089 -2.815 5.723 1.00 3.90 ATOM 82 OE2 GLU 10 6.637 -3.946 6.913 1.00 3.90 ATOM 83 N MET 11 3.423 -0.107 3.322 1.00 2.80 ATOM 84 CA MET 11 3.150 1.200 2.693 1.00 2.80 ATOM 85 C MET 11 2.893 2.328 3.707 1.00 2.80 ATOM 86 O MET 11 3.377 3.447 3.519 1.00 2.80 ATOM 87 CB MET 11 1.979 1.047 1.706 1.00 3.70 ATOM 88 CG MET 11 1.578 2.365 1.026 1.00 3.70 ATOM 89 SD MET 11 0.328 2.197 -0.283 1.00 3.70 ATOM 90 CE MET 11 -1.114 1.668 0.686 1.00 3.70 ATOM 91 N LYS 12 2.212 2.032 4.824 1.00 2.80 ATOM 92 CA LYS 12 2.036 2.987 5.937 1.00 2.80 ATOM 93 C LYS 12 3.378 3.395 6.558 1.00 2.80 ATOM 94 O LYS 12 3.596 4.578 6.821 1.00 2.80 ATOM 95 CB LYS 12 1.087 2.404 6.999 1.00 4.00 ATOM 96 CG LYS 12 -0.359 2.307 6.482 1.00 4.00 ATOM 97 CD LYS 12 -1.325 1.911 7.608 1.00 4.00 ATOM 98 CE LYS 12 -2.771 1.905 7.090 1.00 4.00 ATOM 99 NZ LYS 12 -3.744 1.615 8.179 1.00 4.00 ATOM 100 N LYS 13 4.312 2.445 6.710 1.00 3.40 ATOM 101 CA LYS 13 5.694 2.695 7.168 1.00 3.40 ATOM 102 C LYS 13 6.493 3.491 6.135 1.00 3.40 ATOM 103 O LYS 13 7.163 4.447 6.512 1.00 3.40 ATOM 104 CB LYS 13 6.427 1.381 7.496 1.00 4.60 ATOM 105 CG LYS 13 5.675 0.483 8.490 1.00 4.60 ATOM 106 CD LYS 13 6.452 -0.822 8.698 1.00 4.60 ATOM 107 CE LYS 13 5.634 -1.820 9.524 1.00 4.60 ATOM 108 NZ LYS 13 6.305 -3.146 9.572 1.00 4.60 ATOM 109 N LYS 14 6.374 3.169 4.838 1.00 3.40 ATOM 110 CA LYS 14 7.047 3.901 3.742 1.00 3.40 ATOM 111 C LYS 14 6.691 5.393 3.775 1.00 3.40 ATOM 112 O LYS 14 7.590 6.231 3.807 1.00 3.40 ATOM 113 CB LYS 14 6.727 3.284 2.363 1.00 4.40 ATOM 114 CG LYS 14 7.221 1.835 2.208 1.00 4.40 ATOM 115 CD LYS 14 6.942 1.279 0.802 1.00 4.40 ATOM 116 CE LYS 14 7.363 -0.198 0.726 1.00 4.40 ATOM 117 NZ LYS 14 7.062 -0.796 -0.606 1.00 4.40 ATOM 118 N PHE 15 5.400 5.729 3.866 1.00 3.10 ATOM 119 CA PHE 15 4.955 7.125 3.973 1.00 3.10 ATOM 120 C PHE 15 5.316 7.777 5.323 1.00 3.10 ATOM 121 O PHE 15 5.796 8.910 5.331 1.00 3.10 ATOM 122 CB PHE 15 3.454 7.225 3.670 1.00 3.80 ATOM 123 CG PHE 15 2.920 8.649 3.679 1.00 3.80 ATOM 124 CD1 PHE 15 3.467 9.617 2.810 1.00 3.80 ATOM 125 CD2 PHE 15 1.884 9.016 4.561 1.00 3.80 ATOM 126 CE1 PHE 15 2.985 10.938 2.827 1.00 3.80 ATOM 127 CE2 PHE 15 1.401 10.338 4.575 1.00 3.80 ATOM 128 CZ PHE 15 1.952 11.300 3.708 1.00 3.80 ATOM 129 N LYS 16 5.194 7.064 6.457 1.00 3.70 ATOM 130 CA LYS 16 5.655 7.547 7.778 1.00 3.70 ATOM 131 C LYS 16 7.148 7.897 7.770 1.00 3.70 ATOM 132 O LYS 16 7.542 8.942 8.281 1.00 3.70 ATOM 133 CB LYS 16 5.332 6.496 8.856 1.00 4.80 ATOM 134 CG LYS 16 5.760 6.936 10.267 1.00 4.80 ATOM 135 CD LYS 16 5.421 5.866 11.313 1.00 4.80 ATOM 136 CE LYS 16 5.901 6.321 12.699 1.00 4.80 ATOM 137 NZ LYS 16 5.601 5.309 13.748 1.00 4.80 ATOM 138 N ASN 17 7.986 7.079 7.138 1.00 4.20 ATOM 139 CA ASN 17 9.420 7.339 7.011 1.00 4.20 ATOM 140 C ASN 17 9.711 8.588 6.146 1.00 4.20 ATOM 141 O ASN 17 10.674 9.300 6.425 1.00 4.20 ATOM 142 CB ASN 17 10.121 6.056 6.521 1.00 4.80 ATOM 143 CG ASN 17 10.055 4.907 7.527 1.00 4.80 ATOM 144 OD1 ASN 17 9.814 5.079 8.716 1.00 4.80 ATOM 145 ND2 ASN 17 10.296 3.690 7.093 1.00 4.80 ATOM 146 N CYS 18 8.850 8.925 5.176 1.00 4.10 ATOM 147 CA CYS 18 8.893 10.206 4.453 1.00 4.10 ATOM 148 C CYS 18 8.434 11.419 5.301 1.00 4.10 ATOM 149 O CYS 18 8.705 12.556 4.916 1.00 4.10 ATOM 150 CB CYS 18 8.075 10.114 3.154 1.00 4.10 ATOM 151 SG CYS 18 8.768 8.872 2.023 1.00 4.10 ATOM 152 N GLU 19 7.756 11.224 6.442 1.00 4.40 ATOM 153 CA GLU 19 7.487 12.290 7.430 1.00 4.40 ATOM 154 C GLU 19 8.685 12.520 8.375 1.00 4.40 ATOM 155 O GLU 19 8.883 13.636 8.862 1.00 4.40 ATOM 156 CB GLU 19 6.232 11.987 8.271 1.00 5.30 ATOM 157 CG GLU 19 4.947 11.829 7.447 1.00 5.30 ATOM 158 CD GLU 19 3.690 11.832 8.340 1.00 5.30 ATOM 159 OE1 GLU 19 3.651 11.110 9.367 1.00 5.30 ATOM 160 OE2 GLU 19 2.718 12.561 8.021 1.00 5.30 ATOM 161 N VAL 20 9.515 11.492 8.610 1.00 4.20 ATOM 162 CA VAL 20 10.788 11.577 9.360 1.00 4.20 ATOM 163 C VAL 20 11.885 12.182 8.467 1.00 4.20 ATOM 164 O VAL 20 12.800 11.506 7.991 1.00 4.20 ATOM 165 CB VAL 20 11.187 10.217 9.982 1.00 4.70 ATOM 166 CG1 VAL 20 12.420 10.345 10.894 1.00 4.70 ATOM 167 CG2 VAL 20 10.061 9.644 10.856 1.00 4.70 ATOM 168 N ARG 21 11.757 13.486 8.191 1.00 3.80 ATOM 169 CA ARG 21 12.632 14.269 7.297 1.00 3.80 ATOM 170 C ARG 21 13.930 14.671 8.007 1.00 3.80 ATOM 171 O ARG 21 14.121 15.820 8.413 1.00 3.80 ATOM 172 CB ARG 21 11.841 15.455 6.705 1.00 5.30 ATOM 173 CG ARG 21 10.686 14.931 5.836 1.00 5.30 ATOM 174 CD ARG 21 9.830 16.026 5.200 1.00 5.30 ATOM 175 NE ARG 21 8.670 15.406 4.531 1.00 5.30 ATOM 176 CZ ARG 21 7.667 16.007 3.919 1.00 5.30 ATOM 177 NH1 ARG 21 6.687 15.300 3.433 1.00 5.30 ATOM 178 NH2 ARG 21 7.612 17.302 3.779 1.00 5.30 ATOM 179 N CYS 22 14.807 13.683 8.202 1.00 3.80 ATOM 180 CA CYS 22 16.141 13.831 8.788 1.00 3.80 ATOM 181 C CYS 22 17.105 14.508 7.787 1.00 3.80 ATOM 182 O CYS 22 17.933 13.856 7.147 1.00 3.80 ATOM 183 CB CYS 22 16.615 12.447 9.261 1.00 4.10 ATOM 184 SG CYS 22 18.153 12.613 10.218 1.00 4.10 ATOM 185 N ASP 23 16.946 15.822 7.602 1.00 4.20 ATOM 186 CA ASP 23 17.686 16.618 6.616 1.00 4.20 ATOM 187 C ASP 23 19.177 16.759 6.989 1.00 4.20 ATOM 188 O ASP 23 19.554 17.556 7.853 1.00 4.20 ATOM 189 CB ASP 23 17.028 18.000 6.444 1.00 4.90 ATOM 190 CG ASP 23 15.574 17.977 5.933 1.00 4.90 ATOM 191 OD1 ASP 23 15.158 17.014 5.247 1.00 4.90 ATOM 192 OD2 ASP 23 14.848 18.971 6.181 1.00 4.90 ATOM 193 N GLU 24 20.033 15.996 6.305 1.00 5.50 ATOM 194 CA GLU 24 21.498 15.987 6.457 1.00 5.50 ATOM 195 C GLU 24 22.140 16.009 5.057 1.00 5.50 ATOM 196 O GLU 24 22.687 15.011 4.581 1.00 5.50 ATOM 197 CB GLU 24 21.951 14.784 7.315 1.00 6.30 ATOM 198 CG GLU 24 21.425 14.842 8.760 1.00 6.30 ATOM 199 CD GLU 24 22.126 13.839 9.703 1.00 6.30 ATOM 200 OE1 GLU 24 22.546 12.740 9.264 1.00 6.30 ATOM 201 OE2 GLU 24 22.261 14.146 10.913 1.00 6.30 ATOM 202 N SER 25 21.985 17.147 4.361 1.00 6.50 ATOM 203 CA SER 25 22.257 17.385 2.921 1.00 6.50 ATOM 204 C SER 25 21.319 16.602 1.979 1.00 6.50 ATOM 205 O SER 25 20.861 17.138 0.968 1.00 6.50 ATOM 206 CB SER 25 23.737 17.186 2.557 1.00 7.00 ATOM 207 OG SER 25 24.581 18.026 3.339 1.00 7.00 ATOM 208 N ASN 26 20.984 15.362 2.341 1.00 6.50 ATOM 209 CA ASN 26 19.919 14.536 1.775 1.00 6.50 ATOM 210 C ASN 26 19.325 13.688 2.922 1.00 6.50 ATOM 211 O ASN 26 18.701 14.261 3.818 1.00 6.50 ATOM 212 CB ASN 26 20.405 13.765 0.527 1.00 7.10 ATOM 213 CG ASN 26 19.275 13.065 -0.228 1.00 7.10 ATOM 214 OD1 ASN 26 18.242 12.703 0.321 1.00 7.10 ATOM 215 ND2 ASN 26 19.431 12.843 -1.511 1.00 7.10 ATOM 216 N HIS 27 19.513 12.358 2.919 1.00 6.10 ATOM 217 CA HIS 27 18.934 11.405 3.884 1.00 6.10 ATOM 218 C HIS 27 17.397 11.506 4.007 1.00 6.10 ATOM 219 O HIS 27 16.807 11.136 5.024 1.00 6.10 ATOM 220 CB HIS 27 19.715 11.454 5.216 1.00 7.50 ATOM 221 CG HIS 27 21.121 10.894 5.115 1.00 7.50 ATOM 222 ND1 HIS 27 22.086 11.234 4.157 1.00 7.50 ATOM 223 CD2 HIS 27 21.663 9.973 5.965 1.00 7.50 ATOM 224 CE1 HIS 27 23.174 10.498 4.444 1.00 7.50 ATOM 225 NE2 HIS 27 22.948 9.735 5.528 1.00 7.50 ATOM 226 N CYS 28 16.723 11.937 2.930 1.00 5.30 ATOM 227 CA CYS 28 15.259 12.060 2.808 1.00 5.30 ATOM 228 C CYS 28 14.548 10.705 2.565 1.00 5.30 ATOM 229 O CYS 28 13.542 10.648 1.858 1.00 5.30 ATOM 230 CB CYS 28 14.947 13.088 1.704 1.00 5.60 ATOM 231 SG CYS 28 15.608 14.726 2.135 1.00 5.60 ATOM 232 N VAL 29 15.112 9.615 3.109 1.00 4.50 ATOM 233 CA VAL 29 14.809 8.170 2.958 1.00 4.50 ATOM 234 C VAL 29 14.808 7.597 1.528 1.00 4.50 ATOM 235 O VAL 29 15.300 6.487 1.331 1.00 4.50 ATOM 236 CB VAL 29 13.584 7.705 3.779 1.00 4.80 ATOM 237 CG1 VAL 29 13.738 8.085 5.257 1.00 4.80 ATOM 238 CG2 VAL 29 12.216 8.191 3.283 1.00 4.80 ATOM 239 N GLU 30 14.309 8.332 0.529 1.00 4.50 ATOM 240 CA GLU 30 14.305 7.983 -0.907 1.00 4.50 ATOM 241 C GLU 30 13.652 6.616 -1.235 1.00 4.50 ATOM 242 O GLU 30 13.981 5.969 -2.234 1.00 4.50 ATOM 243 CB GLU 30 15.712 8.153 -1.521 1.00 5.70 ATOM 244 CG GLU 30 16.347 9.521 -1.215 1.00 5.70 ATOM 245 CD GLU 30 17.526 9.841 -2.158 1.00 5.70 ATOM 246 OE1 GLU 30 18.392 8.962 -2.392 1.00 5.70 ATOM 247 OE2 GLU 30 17.607 10.987 -2.665 1.00 5.70 ATOM 248 N VAL 31 12.726 6.161 -0.379 1.00 4.10 ATOM 249 CA VAL 31 12.052 4.852 -0.468 1.00 4.10 ATOM 250 C VAL 31 11.158 4.767 -1.716 1.00 4.10 ATOM 251 O VAL 31 10.424 5.703 -2.041 1.00 4.10 ATOM 252 CB VAL 31 11.287 4.555 0.839 1.00 4.30 ATOM 253 CG1 VAL 31 10.368 3.331 0.757 1.00 4.30 ATOM 254 CG2 VAL 31 12.280 4.286 1.980 1.00 4.30 ATOM 255 N ARG 32 11.211 3.622 -2.411 1.00 4.40 ATOM 256 CA ARG 32 10.627 3.380 -3.750 1.00 4.40 ATOM 257 C ARG 32 9.107 3.114 -3.753 1.00 4.40 ATOM 258 O ARG 32 8.621 2.199 -4.419 1.00 4.40 ATOM 259 CB ARG 32 11.446 2.282 -4.466 1.00 6.20 ATOM 260 CG ARG 32 12.917 2.694 -4.680 1.00 6.20 ATOM 261 CD ARG 32 13.746 1.597 -5.364 1.00 6.20 ATOM 262 NE ARG 32 13.263 1.287 -6.728 1.00 6.20 ATOM 263 CZ ARG 32 13.541 1.930 -7.849 1.00 6.20 ATOM 264 NH1 ARG 32 13.032 1.528 -8.978 1.00 6.20 ATOM 265 NH2 ARG 32 14.319 2.978 -7.881 1.00 6.20 ATOM 266 N CYS 33 8.345 3.915 -3.007 1.00 4.10 ATOM 267 CA CYS 33 6.877 3.929 -3.018 1.00 4.10 ATOM 268 C CYS 33 6.349 4.650 -4.281 1.00 4.10 ATOM 269 O CYS 33 6.042 5.847 -4.253 1.00 4.10 ATOM 270 CB CYS 33 6.395 4.551 -1.695 1.00 4.30 ATOM 271 SG CYS 33 4.582 4.498 -1.577 1.00 4.30 ATOM 272 N SER 34 6.289 3.924 -5.404 1.00 4.30 ATOM 273 CA SER 34 5.897 4.438 -6.723 1.00 4.30 ATOM 274 C SER 34 5.201 3.363 -7.572 1.00 4.30 ATOM 275 O SER 34 5.805 2.353 -7.942 1.00 4.30 ATOM 276 CB SER 34 7.128 4.983 -7.458 1.00 4.70 ATOM 277 OG SER 34 6.773 5.463 -8.748 1.00 4.70 ATOM 278 N ASP 35 3.929 3.609 -7.898 1.00 4.80 ATOM 279 CA ASP 35 3.069 2.808 -8.787 1.00 4.80 ATOM 280 C ASP 35 2.573 3.631 -10.002 1.00 4.80 ATOM 281 O ASP 35 1.511 3.355 -10.566 1.00 4.80 ATOM 282 CB ASP 35 1.902 2.190 -7.990 1.00 5.60 ATOM 283 CG ASP 35 2.322 1.259 -6.838 1.00 5.60 ATOM 284 OD1 ASP 35 3.290 0.473 -6.986 1.00 5.60 ATOM 285 OD2 ASP 35 1.633 1.257 -5.788 1.00 5.60 ATOM 286 N THR 36 3.323 4.674 -10.386 1.00 5.10 ATOM 287 CA THR 36 3.034 5.672 -11.443 1.00 5.10 ATOM 288 C THR 36 1.818 6.571 -11.161 1.00 5.10 ATOM 289 O THR 36 1.959 7.798 -11.143 1.00 5.10 ATOM 290 CB THR 36 2.977 5.022 -12.842 1.00 5.70 ATOM 291 OG1 THR 36 4.219 4.403 -13.131 1.00 5.70 ATOM 292 CG2 THR 36 2.702 6.023 -13.968 1.00 5.70 ATOM 293 N LYS 37 0.636 5.996 -10.901 1.00 5.50 ATOM 294 CA LYS 37 -0.569 6.728 -10.454 1.00 5.50 ATOM 295 C LYS 37 -0.459 7.192 -8.995 1.00 5.50 ATOM 296 O LYS 37 -0.961 8.264 -8.651 1.00 5.50 ATOM 297 CB LYS 37 -1.819 5.847 -10.624 1.00 7.00 ATOM 298 CG LYS 37 -2.108 5.515 -12.096 1.00 7.00 ATOM 299 CD LYS 37 -3.404 4.703 -12.223 1.00 7.00 ATOM 300 CE LYS 37 -3.662 4.343 -13.691 1.00 7.00 ATOM 301 NZ LYS 37 -4.913 3.553 -13.849 1.00 7.00 ATOM 302 N TYR 38 0.217 6.400 -8.160 1.00 5.30 ATOM 303 CA TYR 38 0.481 6.680 -6.745 1.00 5.30 ATOM 304 C TYR 38 1.984 6.879 -6.511 1.00 5.30 ATOM 305 O TYR 38 2.774 5.964 -6.751 1.00 5.30 ATOM 306 CB TYR 38 -0.077 5.540 -5.874 1.00 6.50 ATOM 307 CG TYR 38 -1.529 5.187 -6.151 1.00 6.50 ATOM 308 CD1 TYR 38 -1.856 3.960 -6.765 1.00 6.50 ATOM 309 CD2 TYR 38 -2.551 6.095 -5.811 1.00 6.50 ATOM 310 CE1 TYR 38 -3.200 3.640 -7.039 1.00 6.50 ATOM 311 CE2 TYR 38 -3.897 5.780 -6.085 1.00 6.50 ATOM 312 CZ TYR 38 -4.226 4.552 -6.699 1.00 6.50 ATOM 313 OH TYR 38 -5.531 4.254 -6.958 1.00 6.50 ATOM 314 N THR 39 2.372 8.060 -6.022 1.00 5.60 ATOM 315 CA THR 39 3.771 8.455 -5.765 1.00 5.60 ATOM 316 C THR 39 3.813 9.341 -4.518 1.00 5.60 ATOM 317 O THR 39 3.222 10.424 -4.513 1.00 5.60 ATOM 318 CB THR 39 4.368 9.196 -6.981 1.00 6.10 ATOM 319 OG1 THR 39 4.365 8.365 -8.126 1.00 6.10 ATOM 320 CG2 THR 39 5.816 9.643 -6.757 1.00 6.10 ATOM 321 N LEU 40 4.486 8.882 -3.456 1.00 6.50 ATOM 322 CA LEU 40 4.467 9.501 -2.115 1.00 6.50 ATOM 323 C LEU 40 5.869 9.947 -1.635 1.00 6.50 ATOM 324 O LEU 40 6.174 9.915 -0.438 1.00 6.50 ATOM 325 CB LEU 40 3.735 8.575 -1.117 1.00 6.90 ATOM 326 CG LEU 40 2.282 8.205 -1.479 1.00 6.90 ATOM 327 CD1 LEU 40 1.716 7.250 -0.427 1.00 6.90 ATOM 328 CD2 LEU 40 1.356 9.423 -1.540 1.00 6.90 ATOM 329 N CYS 41 6.729 10.346 -2.580 1.00 8.00 ATOM 330 CA CYS 41 8.060 10.917 -2.333 1.00 8.00 ATOM 331 C CYS 41 7.973 12.362 -1.792 1.00 8.00 ATOM 332 O CYS 41 7.375 13.231 -2.474 1.00 8.00 ATOM 333 CB CYS 41 8.874 10.810 -3.633 1.00 8.30 ATOM 334 SG CYS 41 10.600 11.272 -3.306 1.00 8.30 TER END