####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS407_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS407_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 1 - 21 4.55 17.42 LCS_AVERAGE: 44.79 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 1 - 18 1.96 19.07 LCS_AVERAGE: 27.54 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 2 - 17 0.99 19.52 LCS_AVERAGE: 21.89 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 18 21 0 3 3 4 8 10 13 17 17 19 19 19 20 21 23 24 25 25 26 27 LCS_GDT Q 2 Q 2 16 18 21 8 12 14 16 16 17 18 18 18 19 19 19 20 21 24 24 25 25 26 27 LCS_GDT E 3 E 3 16 18 21 10 12 14 16 16 17 18 18 18 19 19 19 20 21 24 24 25 25 26 27 LCS_GDT T 4 T 4 16 18 21 10 12 14 16 16 17 18 18 18 19 19 19 20 21 24 24 25 25 26 27 LCS_GDT R 5 R 5 16 18 21 10 12 14 16 16 17 18 18 18 19 19 19 20 21 24 24 25 25 26 27 LCS_GDT K 6 K 6 16 18 21 10 12 14 16 16 17 18 18 18 19 19 19 20 21 24 24 25 25 26 27 LCS_GDT K 7 K 7 16 18 21 10 12 14 16 16 17 18 18 18 19 19 19 20 21 24 24 25 25 26 27 LCS_GDT C 8 C 8 16 18 21 10 12 14 16 16 17 18 18 18 19 19 19 20 21 24 24 25 25 26 27 LCS_GDT T 9 T 9 16 18 21 10 12 14 16 16 17 18 18 18 19 19 19 20 21 24 24 25 25 26 27 LCS_GDT E 10 E 10 16 18 21 10 12 14 16 16 17 18 18 18 19 19 19 20 21 24 24 25 25 26 27 LCS_GDT M 11 M 11 16 18 21 10 12 14 16 16 17 18 18 18 19 19 19 20 21 24 24 25 25 26 27 LCS_GDT K 12 K 12 16 18 21 10 12 14 16 16 17 18 18 18 19 19 19 20 21 24 24 25 25 26 27 LCS_GDT K 13 K 13 16 18 21 5 12 14 16 16 17 18 18 18 19 19 19 20 21 24 24 25 25 26 27 LCS_GDT K 14 K 14 16 18 21 7 12 14 16 16 17 18 18 18 19 19 19 20 21 24 24 25 25 26 27 LCS_GDT F 15 F 15 16 18 21 3 9 14 16 16 17 18 18 18 19 19 19 20 21 24 24 25 25 26 27 LCS_GDT K 16 K 16 16 18 21 3 4 8 16 16 17 18 18 18 19 19 19 20 21 24 24 25 25 26 27 LCS_GDT N 17 N 17 16 18 21 3 4 14 16 16 17 18 18 18 19 19 19 20 21 24 24 25 25 26 27 LCS_GDT C 18 C 18 4 18 21 3 4 4 6 13 17 18 18 18 19 19 19 20 21 24 24 25 25 26 27 LCS_GDT E 19 E 19 5 7 21 3 4 5 6 10 14 18 18 18 19 19 19 20 21 24 24 25 25 26 27 LCS_GDT V 20 V 20 5 7 21 3 4 5 6 7 8 9 10 12 14 15 15 18 19 24 24 25 25 26 27 LCS_GDT R 21 R 21 5 7 21 3 4 5 6 7 8 9 10 12 14 15 15 16 19 19 22 23 24 26 27 LCS_GDT C 22 C 22 5 7 17 3 4 5 6 7 8 9 10 12 14 15 15 16 19 19 22 23 23 24 25 LCS_GDT D 23 D 23 5 7 17 3 4 5 6 7 8 9 10 12 14 15 15 16 19 19 22 23 23 24 25 LCS_GDT E 24 E 24 4 7 17 3 4 4 5 7 8 9 10 12 14 15 15 16 19 19 22 23 23 24 25 LCS_GDT S 25 S 25 4 6 17 3 4 4 4 6 8 8 10 12 14 15 15 16 19 19 22 23 23 24 25 LCS_GDT N 26 N 26 4 6 17 3 4 4 4 5 8 8 10 12 14 15 15 16 19 19 22 23 23 24 25 LCS_GDT H 27 H 27 4 5 17 3 4 4 4 6 7 8 10 12 14 15 15 16 19 19 22 23 23 24 24 LCS_GDT C 28 C 28 5 6 17 4 5 5 5 6 7 8 10 12 14 15 15 16 19 19 22 23 23 24 24 LCS_GDT V 29 V 29 5 6 17 4 5 5 5 6 7 8 10 12 14 15 15 16 19 19 22 23 23 24 25 LCS_GDT E 30 E 30 5 6 17 4 5 5 5 6 7 8 10 12 14 15 15 16 19 19 22 23 23 24 25 LCS_GDT V 31 V 31 5 6 17 4 5 5 5 6 7 8 10 12 14 15 15 16 19 24 24 25 25 26 27 LCS_GDT R 32 R 32 5 6 17 4 5 5 5 6 7 8 10 12 14 16 19 20 21 24 24 25 25 26 27 LCS_GDT C 33 C 33 4 6 17 3 3 4 4 6 6 8 9 12 13 14 15 17 20 24 24 25 25 26 27 LCS_GDT S 34 S 34 4 6 17 3 3 4 4 5 6 7 8 8 9 11 16 20 21 24 24 25 25 26 27 LCS_GDT D 35 D 35 5 6 17 3 4 5 5 5 6 8 9 12 12 13 15 17 20 24 24 25 25 26 27 LCS_GDT T 36 T 36 5 6 17 3 4 5 5 5 6 8 9 12 12 14 15 16 19 19 22 23 23 24 27 LCS_GDT K 37 K 37 5 6 17 3 4 5 5 5 6 7 8 8 8 9 9 9 12 13 14 15 17 17 19 LCS_GDT Y 38 Y 38 5 6 10 3 4 5 5 5 6 7 8 8 8 9 9 9 10 10 10 10 11 12 12 LCS_GDT T 39 T 39 5 6 10 3 4 5 5 5 6 7 8 8 8 9 9 9 10 10 10 10 11 12 12 LCS_GDT L 40 L 40 3 4 10 3 3 3 3 3 5 7 8 8 8 9 9 9 10 10 10 10 11 12 12 LCS_GDT C 41 C 41 3 4 10 3 3 3 3 3 4 4 4 5 8 9 9 9 10 10 10 10 11 12 12 LCS_AVERAGE LCS_A: 31.41 ( 21.89 27.54 44.79 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 12 14 16 16 17 18 18 18 19 19 19 20 21 24 24 25 25 26 27 GDT PERCENT_AT 24.39 29.27 34.15 39.02 39.02 41.46 43.90 43.90 43.90 46.34 46.34 46.34 48.78 51.22 58.54 58.54 60.98 60.98 63.41 65.85 GDT RMS_LOCAL 0.29 0.44 0.69 0.99 0.99 1.49 2.03 2.03 2.03 2.36 2.36 2.36 3.01 3.51 5.02 4.73 5.13 5.13 5.69 6.06 GDT RMS_ALL_AT 19.74 19.84 19.67 19.52 19.52 18.91 18.37 18.37 18.37 18.53 18.53 18.53 18.23 17.99 16.88 17.26 16.96 16.96 16.54 16.35 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 6.411 0 0.645 0.601 8.701 9.545 6.364 8.701 LGA Q 2 Q 2 1.454 0 0.637 1.189 7.774 53.636 30.707 5.066 LGA E 3 E 3 1.218 0 0.055 1.217 6.896 65.455 37.778 4.193 LGA T 4 T 4 1.402 0 0.028 1.158 3.523 65.455 48.831 3.523 LGA R 5 R 5 1.009 0 0.043 1.016 3.543 73.636 59.008 2.716 LGA K 6 K 6 0.427 0 0.034 1.238 7.638 100.000 55.758 7.638 LGA K 7 K 7 0.958 0 0.027 0.774 4.390 77.727 46.061 4.390 LGA C 8 C 8 1.461 0 0.040 0.766 4.859 65.455 52.424 4.859 LGA T 9 T 9 1.371 0 0.017 0.158 2.626 65.455 55.844 1.803 LGA E 10 E 10 0.735 0 0.014 0.766 5.124 86.364 50.101 5.124 LGA M 11 M 11 0.880 0 0.065 1.169 4.174 77.727 58.864 4.174 LGA K 12 K 12 1.850 0 0.037 0.992 7.603 54.545 31.515 7.603 LGA K 13 K 13 2.052 0 0.064 0.608 4.930 47.727 27.677 4.116 LGA K 14 K 14 1.601 0 0.057 0.939 2.912 55.000 53.737 2.912 LGA F 15 F 15 1.749 0 0.343 0.388 3.946 54.545 33.554 3.946 LGA K 16 K 16 2.435 0 0.596 1.166 4.717 29.545 38.384 3.241 LGA N 17 N 17 2.400 0 0.053 1.118 5.968 41.364 23.409 5.968 LGA C 18 C 18 2.992 0 0.681 0.642 4.784 19.545 14.848 4.462 LGA E 19 E 19 5.256 0 0.543 1.258 11.492 2.727 1.212 11.492 LGA V 20 V 20 11.269 0 0.135 0.240 14.338 0.000 0.000 14.338 LGA R 21 R 21 16.625 0 0.645 1.206 22.420 0.000 0.000 20.362 LGA C 22 C 22 22.722 0 0.112 0.726 25.144 0.000 0.000 22.420 LGA D 23 D 23 29.582 0 0.673 0.570 32.954 0.000 0.000 29.282 LGA E 24 E 24 35.478 0 0.068 1.045 39.265 0.000 0.000 35.983 LGA S 25 S 25 37.252 0 0.603 0.569 37.252 0.000 0.000 36.982 LGA N 26 N 26 36.614 0 0.655 0.807 37.837 0.000 0.000 37.023 LGA H 27 H 27 35.291 0 0.086 1.284 43.789 0.000 0.000 43.789 LGA C 28 C 28 32.184 0 0.643 0.575 36.058 0.000 0.000 36.058 LGA V 29 V 29 25.109 0 0.127 0.281 27.656 0.000 0.000 21.484 LGA E 30 E 30 20.076 0 0.042 0.898 22.858 0.000 0.000 21.807 LGA V 31 V 31 13.099 0 0.055 0.179 15.685 0.000 0.000 10.383 LGA R 32 R 32 8.764 0 0.553 1.184 12.406 0.000 0.000 11.919 LGA C 33 C 33 10.171 0 0.506 1.105 12.283 0.000 0.000 12.283 LGA S 34 S 34 9.541 0 0.101 0.627 10.630 0.000 0.000 10.595 LGA D 35 D 35 10.700 0 0.635 0.489 11.514 0.000 0.000 10.660 LGA T 36 T 36 14.761 0 0.109 0.243 18.512 0.000 0.000 15.124 LGA K 37 K 37 19.105 0 0.076 1.532 20.287 0.000 0.000 19.021 LGA Y 38 Y 38 24.547 0 0.608 1.488 30.559 0.000 0.000 30.559 LGA T 39 T 39 30.277 0 0.615 0.824 33.382 0.000 0.000 30.413 LGA L 40 L 40 31.821 0 0.173 1.034 35.067 0.000 0.000 32.853 LGA C 41 C 41 30.881 0 0.241 0.847 32.347 0.000 0.000 27.429 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 13.278 13.237 13.999 25.499 17.709 4.257 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 18 2.03 42.683 38.786 0.843 LGA_LOCAL RMSD: 2.035 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 18.371 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 13.278 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.096628 * X + 0.035280 * Y + -0.994695 * Z + 0.835075 Y_new = 0.916316 * X + -0.387052 * Y + -0.102743 * Z + 10.310832 Z_new = -0.388623 * X + -0.921383 * Y + 0.005072 * Z + 0.011897 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.675861 0.399137 -1.565291 [DEG: 96.0198 22.8689 -89.6846 ] ZXZ: -1.467871 1.565724 -2.742450 [DEG: -84.1028 89.7094 -157.1308 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS407_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS407_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 18 2.03 38.786 13.28 REMARK ---------------------------------------------------------- MOLECULE T0955TS407_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 1 CB SER 1 -1.956 -15.335 6.022 1.00 0.00 C ATOM 2 OG SER 1 -2.302 -15.443 7.394 1.00 0.00 O ATOM 4 C SER 1 -0.184 -14.700 4.362 1.00 0.00 C ATOM 5 O SER 1 0.416 -15.651 3.843 1.00 0.00 O ATOM 8 N SER 1 -0.488 -13.386 6.458 1.00 0.00 N ATOM 10 CA SER 1 -0.553 -14.746 5.850 1.00 0.00 C ATOM 11 N GLN 2 -0.540 -13.591 3.696 1.00 0.00 N ATOM 13 CA GLN 2 -0.272 -13.363 2.263 1.00 0.00 C ATOM 14 CB GLN 2 -1.543 -12.897 1.535 1.00 0.00 C ATOM 15 CG GLN 2 -2.631 -13.960 1.407 1.00 0.00 C ATOM 16 CD GLN 2 -3.861 -13.452 0.679 1.00 0.00 C ATOM 17 OE1 GLN 2 -4.793 -12.937 1.297 1.00 0.00 O ATOM 18 NE2 GLN 2 -3.871 -13.595 -0.642 1.00 0.00 N ATOM 21 C GLN 2 0.852 -12.336 2.050 1.00 0.00 C ATOM 22 O GLN 2 0.993 -11.398 2.845 1.00 0.00 O ATOM 23 N GLU 3 1.641 -12.533 0.984 1.00 0.00 N ATOM 25 CA GLU 3 2.779 -11.668 0.598 1.00 0.00 C ATOM 26 CB GLU 3 3.643 -12.350 -0.472 1.00 0.00 C ATOM 27 CG GLU 3 4.423 -13.569 0.017 1.00 0.00 C ATOM 28 CD GLU 3 5.265 -14.201 -1.076 1.00 0.00 C ATOM 29 OE1 GLU 3 4.755 -15.097 -1.780 1.00 0.00 O ATOM 30 OE2 GLU 3 6.440 -13.803 -1.227 1.00 0.00 O ATOM 31 C GLU 3 2.374 -10.262 0.115 1.00 0.00 C ATOM 32 O GLU 3 3.042 -9.277 0.454 1.00 0.00 O ATOM 33 N THR 4 1.268 -10.186 -0.641 1.00 0.00 N ATOM 35 CA THR 4 0.722 -8.928 -1.200 1.00 0.00 C ATOM 36 CB THR 4 -0.389 -9.203 -2.258 1.00 0.00 C ATOM 37 OG1 THR 4 -1.355 -10.116 -1.722 1.00 0.00 O ATOM 39 CG2 THR 4 0.211 -9.784 -3.534 1.00 0.00 C ATOM 40 C THR 4 0.183 -7.976 -0.112 1.00 0.00 C ATOM 41 O THR 4 0.407 -6.760 -0.183 1.00 0.00 O ATOM 42 N ARG 5 -0.473 -8.552 0.908 1.00 0.00 N ATOM 44 CA ARG 5 -1.049 -7.816 2.054 1.00 0.00 C ATOM 45 CB ARG 5 -1.950 -8.732 2.896 1.00 0.00 C ATOM 46 CG ARG 5 -3.238 -9.179 2.200 1.00 0.00 C ATOM 47 CD ARG 5 -4.083 -10.096 3.082 1.00 0.00 C ATOM 48 NE ARG 5 -4.684 -9.395 4.221 1.00 0.00 N ATOM 50 CZ ARG 5 -5.431 -9.965 5.168 1.00 0.00 C ATOM 51 NH1 ARG 5 -5.920 -9.221 6.151 1.00 0.00 N ATOM 54 NH2 ARG 5 -5.694 -11.267 5.146 1.00 0.00 N ATOM 57 C ARG 5 0.059 -7.211 2.933 1.00 0.00 C ATOM 58 O ARG 5 -0.037 -6.047 3.337 1.00 0.00 O ATOM 59 N LYS 6 1.126 -7.995 3.160 1.00 0.00 N ATOM 61 CA LYS 6 2.302 -7.599 3.965 1.00 0.00 C ATOM 62 CB LYS 6 3.205 -8.808 4.247 1.00 0.00 C ATOM 63 CG LYS 6 2.613 -9.838 5.204 1.00 0.00 C ATOM 64 CD LYS 6 3.577 -10.988 5.445 1.00 0.00 C ATOM 65 CE LYS 6 2.988 -12.008 6.406 1.00 0.00 C ATOM 66 NZ LYS 6 3.922 -13.141 6.658 1.00 0.00 N ATOM 70 C LYS 6 3.113 -6.483 3.284 1.00 0.00 C ATOM 71 O LYS 6 3.549 -5.539 3.954 1.00 0.00 O ATOM 72 N LYS 7 3.268 -6.586 1.954 1.00 0.00 N ATOM 74 CA LYS 7 3.994 -5.605 1.122 1.00 0.00 C ATOM 75 CB LYS 7 4.219 -6.144 -0.297 1.00 0.00 C ATOM 76 CG LYS 7 5.318 -7.194 -0.405 1.00 0.00 C ATOM 77 CD LYS 7 5.493 -7.668 -1.844 1.00 0.00 C ATOM 78 CE LYS 7 6.594 -8.717 -1.975 1.00 0.00 C ATOM 79 NZ LYS 7 7.966 -8.178 -1.735 1.00 0.00 N ATOM 83 C LYS 7 3.250 -4.259 1.061 1.00 0.00 C ATOM 84 O LYS 7 3.886 -3.199 1.079 1.00 0.00 O ATOM 85 N CYS 8 1.910 -4.325 1.015 1.00 0.00 N ATOM 87 CA CYS 8 1.018 -3.148 0.977 1.00 0.00 C ATOM 88 CB CYS 8 -0.420 -3.565 0.644 1.00 0.00 C ATOM 89 SG CYS 8 -0.649 -4.184 -1.039 1.00 0.00 S ATOM 90 C CYS 8 1.049 -2.358 2.299 1.00 0.00 C ATOM 91 O CYS 8 1.114 -1.122 2.276 1.00 0.00 O ATOM 92 N THR 9 1.036 -3.082 3.431 1.00 0.00 N ATOM 94 CA THR 9 1.082 -2.495 4.789 1.00 0.00 C ATOM 95 CB THR 9 0.758 -3.558 5.896 1.00 0.00 C ATOM 96 OG1 THR 9 -0.257 -4.446 5.417 1.00 0.00 O ATOM 98 CG2 THR 9 0.230 -2.887 7.177 1.00 0.00 C ATOM 99 C THR 9 2.466 -1.847 5.042 1.00 0.00 C ATOM 100 O THR 9 2.538 -0.761 5.625 1.00 0.00 O ATOM 101 N GLU 10 3.534 -2.497 4.554 1.00 0.00 N ATOM 103 CA GLU 10 4.927 -2.020 4.687 1.00 0.00 C ATOM 104 CB GLU 10 5.927 -3.109 4.276 1.00 0.00 C ATOM 105 CG GLU 10 6.113 -4.217 5.307 1.00 0.00 C ATOM 106 CD GLU 10 7.093 -5.283 4.854 1.00 0.00 C ATOM 107 OE1 GLU 10 8.301 -5.144 5.141 1.00 0.00 O ATOM 108 OE2 GLU 10 6.655 -6.262 4.213 1.00 0.00 O ATOM 109 C GLU 10 5.180 -0.737 3.876 1.00 0.00 C ATOM 110 O GLU 10 5.836 0.187 4.373 1.00 0.00 O ATOM 111 N MET 11 4.618 -0.682 2.657 1.00 0.00 N ATOM 113 CA MET 11 4.728 0.472 1.740 1.00 0.00 C ATOM 114 CG MET 11 5.199 -0.722 -0.489 1.00 0.00 C ATOM 115 SD MET 11 4.640 -0.994 -2.185 1.00 0.00 S ATOM 116 CE MET 11 4.038 -2.683 -2.091 1.00 0.00 C ATOM 117 C MET 11 3.978 1.704 2.274 1.00 0.00 C ATOM 118 O MET 11 4.486 2.828 2.174 1.00 0.00 O ATOM 119 CB MET 11 4.226 0.116 0.335 1.00 0.00 C ATOM 120 N LYS 12 2.779 1.477 2.833 1.00 0.00 N ATOM 122 CA LYS 12 1.921 2.522 3.430 1.00 0.00 C ATOM 123 CB LYS 12 0.509 1.985 3.700 1.00 0.00 C ATOM 124 CG LYS 12 -0.337 1.764 2.451 1.00 0.00 C ATOM 125 CD LYS 12 -1.720 1.230 2.807 1.00 0.00 C ATOM 126 CE LYS 12 -2.591 1.011 1.571 1.00 0.00 C ATOM 127 NZ LYS 12 -2.116 -0.103 0.698 1.00 0.00 N ATOM 131 C LYS 12 2.523 3.094 4.728 1.00 0.00 C ATOM 132 O LYS 12 2.454 4.306 4.963 1.00 0.00 O ATOM 133 N LYS 13 3.109 2.206 5.547 1.00 0.00 N ATOM 135 CA LYS 13 3.753 2.543 6.836 1.00 0.00 C ATOM 136 CB LYS 13 3.990 1.281 7.676 1.00 0.00 C ATOM 137 CG LYS 13 2.753 0.769 8.400 1.00 0.00 C ATOM 138 CD LYS 13 3.068 -0.474 9.219 1.00 0.00 C ATOM 139 CE LYS 13 1.837 -0.976 9.958 1.00 0.00 C ATOM 140 NZ LYS 13 2.132 -2.190 10.767 1.00 0.00 N ATOM 144 C LYS 13 5.055 3.360 6.748 1.00 0.00 C ATOM 145 O LYS 13 5.262 4.262 7.567 1.00 0.00 O ATOM 146 N LYS 14 5.913 3.046 5.763 1.00 0.00 N ATOM 148 CA LYS 14 7.203 3.742 5.557 1.00 0.00 C ATOM 149 CB LYS 14 8.159 2.929 4.652 1.00 0.00 C ATOM 150 CG LYS 14 7.668 2.536 3.247 1.00 0.00 C ATOM 151 CD LYS 14 8.777 1.838 2.471 1.00 0.00 C ATOM 152 CE LYS 14 8.372 1.557 1.034 1.00 0.00 C ATOM 153 NZ LYS 14 9.453 0.868 0.277 1.00 0.00 N ATOM 157 C LYS 14 7.102 5.216 5.101 1.00 0.00 C ATOM 158 O LYS 14 7.808 6.074 5.641 1.00 0.00 O ATOM 159 N PHE 15 6.228 5.484 4.119 1.00 0.00 N ATOM 161 CA PHE 15 5.992 6.836 3.578 1.00 0.00 C ATOM 162 CB PHE 15 6.193 6.869 2.037 1.00 0.00 C ATOM 163 CG PHE 15 7.646 6.750 1.579 1.00 0.00 C ATOM 164 CD1 PHE 15 8.183 5.498 1.199 1.00 0.00 C ATOM 165 CD2 PHE 15 8.474 7.895 1.481 1.00 0.00 C ATOM 166 CE1 PHE 15 9.520 5.382 0.728 1.00 0.00 C ATOM 167 CE2 PHE 15 9.813 7.796 1.011 1.00 0.00 C ATOM 168 CZ PHE 15 10.338 6.535 0.635 1.00 0.00 C ATOM 169 C PHE 15 4.585 7.345 3.946 1.00 0.00 C ATOM 170 O PHE 15 3.581 6.682 3.645 1.00 0.00 O ATOM 171 N LYS 16 4.536 8.494 4.633 1.00 0.00 N ATOM 173 CA LYS 16 3.285 9.142 5.078 1.00 0.00 C ATOM 174 CB LYS 16 3.203 9.204 6.627 1.00 0.00 C ATOM 175 CG LYS 16 4.462 9.691 7.377 1.00 0.00 C ATOM 176 CD LYS 16 4.253 9.668 8.887 1.00 0.00 C ATOM 177 CE LYS 16 5.494 10.130 9.648 1.00 0.00 C ATOM 178 NZ LYS 16 6.646 9.183 9.547 1.00 0.00 N ATOM 182 C LYS 16 3.062 10.529 4.434 1.00 0.00 C ATOM 183 O LYS 16 3.792 11.485 4.736 1.00 0.00 O ATOM 184 N ASN 17 2.086 10.605 3.515 1.00 0.00 N ATOM 186 CA ASN 17 1.724 11.840 2.789 1.00 0.00 C ATOM 187 CB ASN 17 2.249 11.808 1.338 1.00 0.00 C ATOM 188 CG ASN 17 3.771 11.866 1.255 1.00 0.00 C ATOM 189 OD1 ASN 17 4.446 10.834 1.258 1.00 0.00 O ATOM 190 ND2 ASN 17 4.316 13.077 1.165 1.00 0.00 N ATOM 193 C ASN 17 0.206 12.078 2.767 1.00 0.00 C ATOM 194 O ASN 17 -0.238 13.228 2.875 1.00 0.00 O ATOM 195 N CYS 18 -0.570 10.992 2.633 1.00 0.00 N ATOM 197 CA CYS 18 -2.044 11.032 2.572 1.00 0.00 C ATOM 198 CB CYS 18 -2.543 10.154 1.415 1.00 0.00 C ATOM 199 SG CYS 18 -1.940 10.657 -0.215 1.00 0.00 S ATOM 200 C CYS 18 -2.742 10.615 3.880 1.00 0.00 C ATOM 201 O CYS 18 -3.907 10.973 4.100 1.00 0.00 O ATOM 202 N GLU 19 -2.013 9.897 4.746 1.00 0.00 N ATOM 204 CA GLU 19 -2.525 9.403 6.043 1.00 0.00 C ATOM 205 CB GLU 19 -1.874 8.049 6.414 1.00 0.00 C ATOM 206 CG GLU 19 -0.341 7.942 6.280 1.00 0.00 C ATOM 207 CD GLU 19 0.184 6.572 6.662 1.00 0.00 C ATOM 208 OE1 GLU 19 0.266 5.695 5.775 1.00 0.00 O ATOM 209 OE2 GLU 19 0.518 6.371 7.849 1.00 0.00 O ATOM 210 C GLU 19 -2.460 10.403 7.222 1.00 0.00 C ATOM 211 O GLU 19 -3.247 10.291 8.172 1.00 0.00 O ATOM 212 N VAL 20 -1.543 11.378 7.131 1.00 0.00 N ATOM 214 CA VAL 20 -1.340 12.421 8.160 1.00 0.00 C ATOM 215 CB VAL 20 0.192 12.604 8.528 1.00 0.00 C ATOM 216 CG1 VAL 20 0.362 13.407 9.832 1.00 0.00 C ATOM 217 CG2 VAL 20 0.878 11.248 8.677 1.00 0.00 C ATOM 218 C VAL 20 -1.944 13.758 7.664 1.00 0.00 C ATOM 219 O VAL 20 -1.885 14.064 6.466 1.00 0.00 O ATOM 220 N ARG 21 -2.541 14.512 8.599 1.00 0.63 N ATOM 222 CA ARG 21 -3.177 15.819 8.335 1.00 0.63 C ATOM 223 CB ARG 21 -4.668 15.811 8.767 1.00 0.63 C ATOM 224 CG ARG 21 -4.996 15.230 10.161 1.00 0.63 C ATOM 225 CD ARG 21 -6.487 15.302 10.451 1.00 0.63 C ATOM 226 NE ARG 21 -6.818 14.761 11.771 1.00 0.63 N ATOM 228 CZ ARG 21 -8.043 14.720 12.298 1.00 0.63 C ATOM 229 NH1 ARG 21 -8.215 14.203 13.507 1.00 0.63 N ATOM 232 NH2 ARG 21 -9.095 15.188 11.634 1.00 0.63 N ATOM 235 C ARG 21 -2.406 16.993 8.977 1.00 0.63 C ATOM 236 O ARG 21 -2.655 18.160 8.647 1.00 0.63 O ATOM 237 N CYS 22 -1.453 16.655 9.864 1.00 0.77 N ATOM 239 CA CYS 22 -0.569 17.576 10.632 1.00 0.77 C ATOM 240 CB CYS 22 0.570 18.151 9.760 1.00 0.77 C ATOM 241 SG CYS 22 0.047 19.200 8.381 1.00 0.77 S ATOM 242 C CYS 22 -1.247 18.702 11.442 1.00 0.77 C ATOM 243 O CYS 22 -2.138 19.393 10.932 1.00 0.77 O ATOM 244 N ASP 23 -0.812 18.861 12.701 1.00 0.80 N ATOM 246 CA ASP 23 -1.333 19.873 13.640 1.00 0.80 C ATOM 247 CB ASP 23 -1.661 19.224 14.999 1.00 0.80 C ATOM 248 CG ASP 23 -2.813 18.226 14.919 1.00 0.80 C ATOM 249 OD1 ASP 23 -2.551 17.025 14.686 1.00 0.80 O ATOM 250 OD2 ASP 23 -3.979 18.639 15.105 1.00 0.80 O ATOM 251 C ASP 23 -0.347 21.039 13.840 1.00 0.80 C ATOM 252 O ASP 23 -0.739 22.112 14.322 1.00 0.80 O ATOM 253 N GLU 24 0.912 20.828 13.429 1.00 0.99 N ATOM 255 CA GLU 24 2.000 21.822 13.541 1.00 0.99 C ATOM 256 CB GLU 24 3.364 21.128 13.770 1.00 0.99 C ATOM 257 CG GLU 24 3.718 19.944 12.842 1.00 0.99 C ATOM 258 CD GLU 24 5.074 19.342 13.154 1.00 0.99 C ATOM 259 OE1 GLU 24 6.079 19.798 12.569 1.00 0.99 O ATOM 260 OE2 GLU 24 5.137 18.411 13.985 1.00 0.99 O ATOM 261 C GLU 24 2.080 22.840 12.381 1.00 0.99 C ATOM 262 O GLU 24 2.307 24.031 12.621 1.00 0.99 O ATOM 263 N SER 25 1.892 22.352 11.146 1.00 1.41 N ATOM 265 CA SER 25 1.929 23.172 9.922 1.00 1.41 C ATOM 266 CB SER 25 2.916 22.580 8.903 1.00 1.41 C ATOM 267 OG SER 25 4.228 22.527 9.435 1.00 1.41 O ATOM 269 C SER 25 0.532 23.313 9.289 1.00 1.41 C ATOM 270 O SER 25 -0.166 22.309 9.085 1.00 1.41 O ATOM 271 N ASN 26 0.128 24.564 9.028 1.00 1.21 N ATOM 273 CA ASN 26 -1.174 24.905 8.421 1.00 1.21 C ATOM 274 CB ASN 26 -2.031 25.777 9.378 1.00 1.21 C ATOM 275 CG ASN 26 -1.245 26.930 10.019 1.00 1.21 C ATOM 276 OD1 ASN 26 -1.186 28.034 9.477 1.00 1.21 O ATOM 277 ND2 ASN 26 -0.654 26.671 11.181 1.00 1.21 N ATOM 280 C ASN 26 -1.033 25.572 7.041 1.00 1.21 C ATOM 281 O ASN 26 -0.197 26.468 6.868 1.00 1.21 O ATOM 282 N HIS 27 -1.861 25.123 6.078 1.00 1.22 N ATOM 284 CA HIS 27 -1.936 25.588 4.663 1.00 1.22 C ATOM 285 CG HIS 27 -3.063 27.804 5.367 1.00 1.22 C ATOM 286 CD2 HIS 27 -2.835 29.115 5.106 1.00 1.22 C ATOM 287 ND1 HIS 27 -3.297 27.724 6.724 1.00 1.22 N ATOM 289 CE1 HIS 27 -3.215 28.930 7.258 1.00 1.22 C ATOM 290 NE2 HIS 27 -2.936 29.791 6.297 1.00 1.22 N ATOM 292 C HIS 27 -0.634 26.038 3.934 1.00 1.22 C ATOM 293 O HIS 27 -0.683 26.811 2.964 1.00 1.22 O ATOM 294 CB HIS 27 -3.103 26.605 4.460 1.00 1.22 C ATOM 295 N CYS 28 0.508 25.509 4.396 1.00 1.39 N ATOM 297 CA CYS 28 1.844 25.806 3.846 1.00 1.39 C ATOM 298 CB CYS 28 2.853 26.008 4.983 1.00 1.39 C ATOM 299 SG CYS 28 2.483 27.399 6.077 1.00 1.39 S ATOM 300 C CYS 28 2.342 24.702 2.900 1.00 1.39 C ATOM 301 O CYS 28 3.096 24.985 1.958 1.00 1.39 O ATOM 302 N VAL 29 1.903 23.459 3.153 1.00 1.34 N ATOM 304 CA VAL 29 2.271 22.268 2.357 1.00 1.34 C ATOM 305 CB VAL 29 2.649 21.032 3.276 1.00 1.34 C ATOM 306 CG1 VAL 29 3.428 19.967 2.482 1.00 1.34 C ATOM 307 CG2 VAL 29 3.478 21.480 4.482 1.00 1.34 C ATOM 308 C VAL 29 1.094 21.905 1.418 1.00 1.34 C ATOM 309 O VAL 29 -0.076 22.036 1.803 1.00 1.34 O ATOM 310 N GLU 30 1.431 21.486 0.190 1.00 0.70 N ATOM 312 CA GLU 30 0.459 21.095 -0.849 1.00 0.70 C ATOM 313 CB GLU 30 0.630 21.959 -2.131 1.00 0.70 C ATOM 314 CG GLU 30 2.072 22.176 -2.686 1.00 0.70 C ATOM 315 CD GLU 30 2.734 23.456 -2.182 1.00 0.70 C ATOM 316 OE1 GLU 30 2.553 24.513 -2.822 1.00 0.70 O ATOM 317 OE2 GLU 30 3.431 23.397 -1.148 1.00 0.70 O ATOM 318 C GLU 30 0.510 19.591 -1.182 1.00 0.70 C ATOM 319 O GLU 30 1.558 18.956 -1.017 1.00 0.70 O ATOM 320 N VAL 31 -0.625 19.045 -1.647 1.00 2.93 N ATOM 322 CA VAL 31 -0.774 17.622 -2.024 1.00 2.93 C ATOM 323 CB VAL 31 -2.103 16.987 -1.433 1.00 2.93 C ATOM 324 CG1 VAL 31 -2.033 15.449 -1.439 1.00 2.93 C ATOM 325 CG2 VAL 31 -2.360 17.482 -0.008 1.00 2.93 C ATOM 326 C VAL 31 -0.771 17.526 -3.568 1.00 2.93 C ATOM 327 O VAL 31 -1.253 18.445 -4.245 1.00 2.93 O ATOM 328 N ARG 32 -0.216 16.417 -4.091 1.00 2.78 N ATOM 330 CA ARG 32 -0.077 16.078 -5.537 1.00 2.78 C ATOM 331 CB ARG 32 -1.088 14.977 -5.989 1.00 2.78 C ATOM 332 CG ARG 32 -2.443 14.834 -5.233 1.00 2.78 C ATOM 333 CD ARG 32 -3.610 15.651 -5.820 1.00 2.78 C ATOM 334 NE ARG 32 -3.540 17.063 -5.439 1.00 2.78 N ATOM 336 CZ ARG 32 -4.594 17.855 -5.237 1.00 2.78 C ATOM 337 NH1 ARG 32 -4.405 19.121 -4.892 1.00 2.78 N ATOM 340 NH2 ARG 32 -5.836 17.399 -5.378 1.00 2.78 N ATOM 343 C ARG 32 0.027 17.200 -6.598 1.00 2.78 C ATOM 344 O ARG 32 1.111 17.409 -7.157 1.00 2.78 O ATOM 345 N CYS 33 -1.086 17.901 -6.861 1.00 2.65 N ATOM 347 CA CYS 33 -1.151 19.005 -7.838 1.00 2.65 C ATOM 348 CB CYS 33 -2.108 18.660 -8.992 1.00 2.65 C ATOM 349 SG CYS 33 -3.789 18.212 -8.489 1.00 2.65 S ATOM 350 C CYS 33 -1.577 20.321 -7.171 1.00 2.65 C ATOM 351 O CYS 33 -2.433 20.315 -6.278 1.00 2.65 O ATOM 352 N SER 34 -0.959 21.432 -7.601 1.00 2.48 N ATOM 354 CA SER 34 -1.236 22.784 -7.082 1.00 2.48 C ATOM 355 CB SER 34 0.058 23.448 -6.583 1.00 2.48 C ATOM 356 OG SER 34 1.064 23.453 -7.584 1.00 2.48 O ATOM 358 C SER 34 -1.932 23.673 -8.128 1.00 2.48 C ATOM 359 O SER 34 -2.950 24.304 -7.821 1.00 2.48 O ATOM 360 N ASP 35 -1.374 23.711 -9.348 1.00 2.59 N ATOM 362 CA ASP 35 -1.901 24.505 -10.475 1.00 2.59 C ATOM 363 CB ASP 35 -0.873 25.568 -10.946 1.00 2.59 C ATOM 364 CG ASP 35 0.546 25.010 -11.125 1.00 2.59 C ATOM 365 OD1 ASP 35 1.331 25.047 -10.152 1.00 2.59 O ATOM 366 OD2 ASP 35 0.873 24.549 -12.241 1.00 2.59 O ATOM 367 C ASP 35 -2.363 23.626 -11.653 1.00 2.59 C ATOM 368 O ASP 35 -1.725 22.610 -11.955 1.00 2.59 O ATOM 369 N THR 36 -3.471 24.029 -12.294 1.00 2.69 N ATOM 371 CA THR 36 -4.067 23.325 -13.447 1.00 2.69 C ATOM 372 CB THR 36 -5.616 23.145 -13.268 1.00 2.69 C ATOM 373 OG1 THR 36 -5.931 23.075 -11.871 1.00 2.69 O ATOM 375 CG2 THR 36 -6.102 21.848 -13.933 1.00 2.69 C ATOM 376 C THR 36 -3.766 24.113 -14.745 1.00 2.69 C ATOM 377 O THR 36 -3.713 25.351 -14.722 1.00 2.69 O ATOM 378 N LYS 37 -3.543 23.379 -15.845 1.00 3.00 N ATOM 380 CA LYS 37 -3.240 23.949 -17.173 1.00 3.00 C ATOM 381 CB LYS 37 -1.940 23.353 -17.738 1.00 3.00 C ATOM 382 CG LYS 37 -0.671 23.763 -16.997 1.00 3.00 C ATOM 383 CD LYS 37 0.567 23.144 -17.638 1.00 3.00 C ATOM 384 CE LYS 37 1.851 23.535 -16.910 1.00 3.00 C ATOM 385 NZ LYS 37 1.973 22.933 -15.549 1.00 3.00 N ATOM 389 C LYS 37 -4.394 23.721 -18.163 1.00 3.00 C ATOM 390 O LYS 37 -4.992 22.636 -18.180 1.00 3.00 O ATOM 391 N TYR 38 -4.708 24.756 -18.956 1.00 3.62 N ATOM 393 CA TYR 38 -5.785 24.727 -19.965 1.00 3.62 C ATOM 394 CB TYR 38 -6.972 25.649 -19.551 1.00 3.62 C ATOM 395 CG TYR 38 -6.637 27.041 -18.986 1.00 3.62 C ATOM 396 CD1 TYR 38 -6.558 28.174 -19.830 1.00 3.62 C ATOM 397 CE1 TYR 38 -6.285 29.469 -19.306 1.00 3.62 C ATOM 398 CD2 TYR 38 -6.434 27.236 -17.597 1.00 3.62 C ATOM 399 CE2 TYR 38 -6.159 28.526 -17.065 1.00 3.62 C ATOM 400 CZ TYR 38 -6.088 29.633 -17.926 1.00 3.62 C ATOM 401 OH TYR 38 -5.823 30.884 -17.417 1.00 3.62 O ATOM 403 C TYR 38 -5.307 25.057 -21.392 1.00 3.62 C ATOM 404 O TYR 38 -5.682 24.359 -22.342 1.00 3.62 O ATOM 405 N THR 39 -4.486 26.111 -21.526 1.00 3.63 N ATOM 407 CA THR 39 -3.936 26.575 -22.818 1.00 3.63 C ATOM 408 CB THR 39 -4.035 28.126 -22.965 1.00 3.63 C ATOM 409 OG1 THR 39 -3.560 28.757 -21.768 1.00 3.63 O ATOM 411 CG2 THR 39 -5.472 28.553 -23.236 1.00 3.63 C ATOM 412 C THR 39 -2.480 26.129 -23.066 1.00 3.63 C ATOM 413 O THR 39 -2.122 25.792 -24.204 1.00 3.63 O ATOM 414 N LEU 40 -1.669 26.105 -21.998 1.00 3.54 N ATOM 416 CA LEU 40 -0.248 25.710 -22.051 1.00 3.54 C ATOM 417 CB LEU 40 0.620 26.700 -21.229 1.00 3.54 C ATOM 418 CG LEU 40 0.872 28.222 -21.436 1.00 3.54 C ATOM 419 CD1 LEU 40 1.663 28.526 -22.722 1.00 3.54 C ATOM 420 CD2 LEU 40 -0.410 29.072 -21.357 1.00 3.54 C ATOM 421 C LEU 40 -0.020 24.275 -21.547 1.00 3.54 C ATOM 422 O LEU 40 -0.782 23.788 -20.705 1.00 3.54 O ATOM 423 N CYS 41 1.021 23.616 -22.079 1.00 3.19 N ATOM 425 CA CYS 41 1.399 22.237 -21.721 1.00 3.19 C ATOM 426 CB CYS 41 1.541 21.377 -22.987 1.00 3.19 C ATOM 427 SG CYS 41 1.781 19.603 -22.692 1.00 3.19 S ATOM 428 C CYS 41 2.705 22.221 -20.921 1.00 3.19 C ATOM 429 O CYS 41 2.851 21.340 -20.047 1.00 3.19 O ATOM 430 OXT CYS 41 3.560 23.097 -21.172 1.00 3.19 O TER END