####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS426_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS426_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.46 1.46 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.46 1.46 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 17 - 41 0.99 1.73 LCS_AVERAGE: 52.47 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 41 41 3 3 5 11 17 32 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 16 41 41 9 18 29 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 17 41 41 9 22 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 17 41 41 9 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 17 41 41 9 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 17 41 41 12 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 17 41 41 12 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 17 41 41 12 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 17 41 41 12 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 17 41 41 12 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 17 41 41 12 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 17 41 41 12 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 17 41 41 12 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 17 41 41 12 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 17 41 41 9 23 33 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 17 41 41 3 3 22 29 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 25 41 41 9 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 25 41 41 9 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 25 41 41 6 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 25 41 41 4 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 25 41 41 5 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 25 41 41 4 22 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 25 41 41 4 15 29 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 25 41 41 9 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 25 41 41 9 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 25 41 41 9 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 25 41 41 12 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 25 41 41 12 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 25 41 41 12 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 25 41 41 9 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 25 41 41 9 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 25 41 41 9 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 25 41 41 6 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 25 41 41 4 4 5 30 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 25 41 41 4 22 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 25 41 41 8 22 33 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 25 41 41 9 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 25 41 41 3 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 25 41 41 4 11 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 25 41 41 9 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 25 41 41 5 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 84.16 ( 52.47 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 23 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 29.27 56.10 82.93 92.68 95.12 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.33 0.66 0.98 1.11 1.18 1.26 1.26 1.46 1.46 1.46 1.46 1.46 1.46 1.46 1.46 1.46 1.46 1.46 1.46 1.46 GDT RMS_ALL_AT 1.72 1.56 1.53 1.51 1.49 1.48 1.48 1.46 1.46 1.46 1.46 1.46 1.46 1.46 1.46 1.46 1.46 1.46 1.46 1.46 # Checking swapping # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 4.693 0 0.187 0.804 7.187 1.818 1.212 6.383 LGA Q 2 Q 2 1.772 0 0.197 0.958 2.946 59.091 53.535 1.566 LGA E 3 E 3 1.191 0 0.045 0.711 4.528 73.636 43.838 4.528 LGA T 4 T 4 0.633 0 0.033 1.151 2.435 90.909 74.545 2.327 LGA R 5 R 5 0.522 0 0.018 0.179 2.730 90.909 65.455 2.730 LGA K 6 K 6 0.451 0 0.021 1.235 6.180 95.455 58.990 6.056 LGA K 7 K 7 0.447 0 0.032 0.682 3.021 95.455 64.646 3.021 LGA C 8 C 8 0.605 0 0.032 0.749 2.707 86.364 75.758 2.707 LGA T 9 T 9 1.074 0 0.021 0.102 1.587 69.545 65.714 1.117 LGA E 10 E 10 1.186 0 0.017 0.502 1.954 65.455 62.222 1.554 LGA M 11 M 11 0.976 0 0.062 0.100 1.045 77.727 79.773 0.958 LGA K 12 K 12 1.155 0 0.048 0.623 2.193 61.818 53.131 2.193 LGA K 13 K 13 1.176 0 0.038 0.590 2.121 65.455 66.061 0.855 LGA K 14 K 14 0.956 0 0.064 0.576 2.367 73.636 73.333 2.367 LGA F 15 F 15 1.400 0 0.115 0.316 2.746 61.818 53.388 2.624 LGA K 16 K 16 2.859 0 0.645 1.096 4.614 28.636 22.828 4.614 LGA N 17 N 17 1.517 0 0.201 0.548 3.402 62.273 45.000 3.402 LGA C 18 C 18 1.398 0 0.028 0.889 4.376 65.455 55.455 4.376 LGA E 19 E 19 1.480 0 0.190 0.412 3.009 69.545 52.727 2.227 LGA V 20 V 20 1.440 0 0.049 0.071 1.718 58.182 55.065 1.693 LGA R 21 R 21 1.372 0 0.051 1.224 5.286 69.545 39.339 5.177 LGA C 22 C 22 1.744 0 0.189 0.943 4.812 47.727 40.606 4.812 LGA D 23 D 23 2.037 0 0.313 1.107 4.948 36.364 28.409 3.718 LGA E 24 E 24 0.380 0 0.156 0.565 2.309 90.909 68.485 2.242 LGA S 25 S 25 1.337 0 0.021 0.079 1.996 65.909 60.909 1.996 LGA N 26 N 26 1.268 0 0.140 1.189 5.771 73.636 45.909 5.771 LGA H 27 H 27 0.571 0 0.066 0.236 1.452 90.909 84.000 1.349 LGA C 28 C 28 0.353 0 0.071 0.092 1.014 86.818 91.212 0.435 LGA V 29 V 29 0.388 0 0.024 0.074 1.327 95.455 84.935 1.014 LGA E 30 E 30 0.527 0 0.127 0.240 1.905 90.909 76.970 1.905 LGA V 31 V 31 0.435 0 0.117 0.155 0.544 90.909 94.805 0.396 LGA R 32 R 32 0.876 0 0.145 1.006 7.636 74.091 41.488 7.636 LGA C 33 C 33 0.678 0 0.514 0.936 3.589 60.000 59.394 1.405 LGA S 34 S 34 2.391 0 0.312 0.599 3.668 41.818 32.727 3.668 LGA D 35 D 35 1.587 0 0.239 0.886 2.096 54.545 52.955 1.928 LGA T 36 T 36 1.946 0 0.266 1.134 3.895 58.182 45.714 3.895 LGA K 37 K 37 0.265 0 0.104 1.299 3.535 78.636 62.424 3.535 LGA Y 38 Y 38 1.513 0 0.020 1.359 5.086 74.545 43.636 5.086 LGA T 39 T 39 1.449 0 0.174 1.067 3.944 48.636 40.519 3.944 LGA L 40 L 40 0.711 0 0.090 1.025 4.434 86.364 60.909 4.434 LGA C 41 C 41 1.298 0 0.208 0.855 3.354 65.455 56.623 3.354 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.460 1.563 2.208 69.135 56.943 32.417 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.46 87.195 94.138 2.628 LGA_LOCAL RMSD: 1.460 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.460 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.460 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.962034 * X + 0.123675 * Y + -0.243300 * Z + -1.753079 Y_new = 0.144995 * X + -0.523645 * Y + -0.839507 * Z + 1.644900 Z_new = -0.231229 * X + -0.842912 * Y + 0.485832 * Z + 5.427310 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.992002 0.233341 -1.047930 [DEG: 171.4291 13.3694 -60.0420 ] ZXZ: -0.282084 1.063481 -2.873857 [DEG: -16.1622 60.9330 -164.6599 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS426_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS426_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.46 94.138 1.46 REMARK ---------------------------------------------------------- MOLECULE T0955TS426_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 1 N SER 1 -4.984 -12.180 0.886 1.00 1.20 N ATOM 2 CA SER 1 -3.591 -12.126 0.460 1.00 1.09 C ATOM 3 C SER 1 -2.707 -11.438 1.478 1.00 0.93 C ATOM 4 O SER 1 -2.579 -10.206 1.483 1.00 0.81 O ATOM 5 CB SER 1 -3.475 -11.404 -0.859 1.00 1.64 C ATOM 6 OG SER 1 -2.122 -11.304 -1.255 1.00 1.64 O ATOM 14 N GLN 2 -2.065 -12.237 2.328 1.00 0.95 N ATOM 15 CA GLN 2 -1.215 -11.661 3.355 1.00 0.85 C ATOM 16 C GLN 2 -0.009 -10.974 2.742 1.00 0.71 C ATOM 17 O GLN 2 0.483 -9.986 3.290 1.00 0.58 O ATOM 18 CB GLN 2 -0.795 -12.699 4.391 1.00 1.27 C ATOM 19 CG GLN 2 -0.095 -12.095 5.620 1.00 1.27 C ATOM 20 CD GLN 2 -1.024 -11.129 6.405 1.00 1.27 C ATOM 21 OE1 GLN 2 -2.220 -11.417 6.609 1.00 1.27 O ATOM 22 NE2 GLN 2 -0.470 -10.001 6.849 1.00 1.27 N ATOM 31 N GLU 3 0.491 -11.500 1.627 1.00 0.77 N ATOM 32 CA GLU 3 1.639 -10.902 0.978 1.00 0.71 C ATOM 33 C GLU 3 1.310 -9.487 0.505 1.00 0.60 C ATOM 34 O GLU 3 2.148 -8.586 0.608 1.00 0.51 O ATOM 35 CB GLU 3 2.082 -11.779 -0.191 1.00 1.06 C ATOM 36 CG GLU 3 2.637 -13.147 0.240 1.00 1.06 C ATOM 37 CD GLU 3 1.552 -14.158 0.573 1.00 1.06 C ATOM 38 OE1 GLU 3 0.390 -13.837 0.402 1.00 1.06 O ATOM 39 OE2 GLU 3 1.882 -15.233 1.007 1.00 1.06 O ATOM 46 N THR 4 0.082 -9.280 0.012 1.00 0.64 N ATOM 47 CA THR 4 -0.323 -7.967 -0.466 1.00 0.58 C ATOM 48 C THR 4 -0.348 -7.018 0.725 1.00 0.46 C ATOM 49 O THR 4 0.081 -5.865 0.614 1.00 0.41 O ATOM 50 CB THR 4 -1.690 -8.005 -1.161 1.00 0.87 C ATOM 51 OG1 THR 4 -1.629 -8.937 -2.242 1.00 0.87 O ATOM 52 CG2 THR 4 -1.999 -6.590 -1.767 1.00 0.87 C ATOM 60 N ARG 5 -0.880 -7.498 1.857 1.00 0.48 N ATOM 61 CA ARG 5 -0.963 -6.709 3.082 1.00 0.43 C ATOM 62 C ARG 5 0.449 -6.301 3.567 1.00 0.32 C ATOM 63 O ARG 5 0.650 -5.169 4.032 1.00 0.30 O ATOM 64 CB ARG 5 -1.664 -7.509 4.170 1.00 0.65 C ATOM 65 CG ARG 5 -3.156 -7.768 3.936 1.00 0.65 C ATOM 66 CD ARG 5 -3.711 -8.669 4.977 1.00 0.65 C ATOM 67 NE ARG 5 -5.091 -9.054 4.727 1.00 0.65 N ATOM 68 CZ ARG 5 -5.757 -10.023 5.395 1.00 0.65 C ATOM 69 NH1 ARG 5 -5.174 -10.743 6.352 1.00 0.65 N ATOM 70 NH2 ARG 5 -7.016 -10.251 5.062 1.00 0.65 N ATOM 84 N LYS 6 1.430 -7.219 3.456 1.00 0.31 N ATOM 85 CA LYS 6 2.811 -6.905 3.843 1.00 0.27 C ATOM 86 C LYS 6 3.386 -5.808 2.947 1.00 0.25 C ATOM 87 O LYS 6 4.045 -4.876 3.430 1.00 0.26 O ATOM 88 CB LYS 6 3.717 -8.140 3.759 1.00 0.41 C ATOM 89 CG LYS 6 3.484 -9.209 4.823 1.00 0.41 C ATOM 90 CD LYS 6 4.431 -10.402 4.611 1.00 0.41 C ATOM 91 CE LYS 6 4.212 -11.499 5.649 1.00 0.41 C ATOM 92 NZ LYS 6 5.120 -12.670 5.425 1.00 0.41 N ATOM 106 N LYS 7 3.123 -5.920 1.640 1.00 0.29 N ATOM 107 CA LYS 7 3.552 -4.933 0.658 1.00 0.33 C ATOM 108 C LYS 7 2.875 -3.582 0.950 1.00 0.29 C ATOM 109 O LYS 7 3.495 -2.520 0.824 1.00 0.35 O ATOM 110 CB LYS 7 3.263 -5.463 -0.754 1.00 0.49 C ATOM 111 CG LYS 7 4.165 -6.615 -1.204 1.00 0.49 C ATOM 112 CD LYS 7 3.748 -7.169 -2.585 1.00 0.49 C ATOM 113 CE LYS 7 4.650 -8.332 -3.017 1.00 0.49 C ATOM 114 NZ LYS 7 4.157 -9.009 -4.275 1.00 0.49 N ATOM 128 N CYS 8 1.603 -3.623 1.377 1.00 0.28 N ATOM 129 CA CYS 8 0.885 -2.401 1.712 1.00 0.31 C ATOM 130 C CYS 8 1.537 -1.706 2.886 1.00 0.33 C ATOM 131 O CYS 8 1.692 -0.480 2.871 1.00 0.36 O ATOM 132 CB CYS 8 -0.572 -2.687 2.079 1.00 0.46 C ATOM 133 SG CYS 8 -1.586 -3.223 0.729 1.00 0.46 S ATOM 139 N THR 9 1.956 -2.488 3.885 1.00 0.34 N ATOM 140 CA THR 9 2.616 -1.955 5.067 1.00 0.43 C ATOM 141 C THR 9 3.904 -1.246 4.676 1.00 0.48 C ATOM 142 O THR 9 4.172 -0.144 5.168 1.00 0.55 O ATOM 143 CB THR 9 2.905 -3.063 6.103 1.00 0.65 C ATOM 144 OG1 THR 9 1.664 -3.643 6.543 1.00 0.65 O ATOM 145 CG2 THR 9 3.637 -2.468 7.308 1.00 0.65 C ATOM 153 N GLU 10 4.710 -1.869 3.801 1.00 0.48 N ATOM 154 CA GLU 10 5.955 -1.251 3.355 1.00 0.61 C ATOM 155 C GLU 10 5.695 0.125 2.749 1.00 0.57 C ATOM 156 O GLU 10 6.396 1.096 3.062 1.00 0.63 O ATOM 157 CB GLU 10 6.653 -2.112 2.297 1.00 0.92 C ATOM 158 CG GLU 10 7.996 -1.551 1.828 1.00 0.92 C ATOM 159 CD GLU 10 8.626 -2.343 0.721 1.00 0.92 C ATOM 160 OE1 GLU 10 8.115 -3.378 0.380 1.00 0.92 O ATOM 161 OE2 GLU 10 9.628 -1.889 0.193 1.00 0.92 O ATOM 168 N MET 11 4.684 0.210 1.872 1.00 0.51 N ATOM 169 CA MET 11 4.361 1.481 1.247 1.00 0.56 C ATOM 170 C MET 11 3.805 2.488 2.231 1.00 0.51 C ATOM 171 O MET 11 4.152 3.664 2.158 1.00 0.61 O ATOM 172 CB MET 11 3.416 1.256 0.089 1.00 0.84 C ATOM 173 CG MET 11 4.051 0.481 -1.077 1.00 0.84 C ATOM 174 SD MET 11 5.461 1.327 -1.848 1.00 0.84 S ATOM 175 CE MET 11 6.959 0.659 -1.089 1.00 0.84 C ATOM 185 N LYS 12 2.975 2.048 3.175 1.00 0.44 N ATOM 186 CA LYS 12 2.423 2.969 4.156 1.00 0.48 C ATOM 187 C LYS 12 3.536 3.611 4.977 1.00 0.54 C ATOM 188 O LYS 12 3.498 4.808 5.263 1.00 0.59 O ATOM 189 CB LYS 12 1.418 2.264 5.067 1.00 0.72 C ATOM 190 CG LYS 12 0.727 3.190 6.070 1.00 0.72 C ATOM 191 CD LYS 12 -0.321 2.444 6.886 1.00 0.72 C ATOM 192 CE LYS 12 -0.978 3.364 7.913 1.00 0.72 C ATOM 193 NZ LYS 12 -1.995 2.648 8.740 1.00 0.72 N ATOM 207 N LYS 13 4.523 2.807 5.384 1.00 0.58 N ATOM 208 CA LYS 13 5.637 3.327 6.163 1.00 0.68 C ATOM 209 C LYS 13 6.542 4.271 5.368 1.00 0.68 C ATOM 210 O LYS 13 6.971 5.301 5.898 1.00 0.76 O ATOM 211 CB LYS 13 6.463 2.178 6.742 1.00 1.02 C ATOM 212 CG LYS 13 5.779 1.410 7.874 1.00 1.02 C ATOM 213 CD LYS 13 6.660 0.274 8.385 1.00 1.02 C ATOM 214 CE LYS 13 6.017 -0.450 9.566 1.00 1.02 C ATOM 215 NZ LYS 13 6.855 -1.591 10.044 1.00 1.02 N ATOM 229 N LYS 14 6.849 3.934 4.107 1.00 0.64 N ATOM 230 CA LYS 14 7.710 4.793 3.295 1.00 0.72 C ATOM 231 C LYS 14 7.010 6.084 2.851 1.00 0.66 C ATOM 232 O LYS 14 7.563 7.185 2.969 1.00 0.82 O ATOM 233 CB LYS 14 8.252 3.996 2.108 1.00 1.08 C ATOM 234 CG LYS 14 9.295 2.958 2.543 1.00 1.08 C ATOM 235 CD LYS 14 9.818 2.102 1.399 1.00 1.08 C ATOM 236 CE LYS 14 10.934 1.177 1.903 1.00 1.08 C ATOM 237 NZ LYS 14 11.428 0.229 0.859 1.00 1.08 N ATOM 251 N PHE 15 5.766 5.980 2.399 1.00 0.50 N ATOM 252 CA PHE 15 5.016 7.149 1.982 1.00 0.49 C ATOM 253 C PHE 15 4.278 7.707 3.182 1.00 0.65 C ATOM 254 O PHE 15 3.060 7.570 3.312 1.00 1.27 O ATOM 255 CB PHE 15 4.057 6.837 0.834 1.00 0.73 C ATOM 256 CG PHE 15 4.720 6.552 -0.453 1.00 0.73 C ATOM 257 CD1 PHE 15 4.896 5.255 -0.907 1.00 0.73 C ATOM 258 CD2 PHE 15 5.187 7.597 -1.226 1.00 0.73 C ATOM 259 CE1 PHE 15 5.520 5.030 -2.112 1.00 0.73 C ATOM 260 CE2 PHE 15 5.814 7.362 -2.414 1.00 0.73 C ATOM 261 CZ PHE 15 5.979 6.077 -2.858 1.00 0.73 C ATOM 271 N LYS 16 5.040 8.322 4.064 1.00 0.90 N ATOM 272 CA LYS 16 4.530 8.814 5.330 1.00 1.15 C ATOM 273 C LYS 16 3.245 9.625 5.144 1.00 1.01 C ATOM 274 O LYS 16 3.177 10.522 4.304 1.00 1.93 O ATOM 275 CB LYS 16 5.610 9.644 6.031 1.00 1.72 C ATOM 276 CG LYS 16 5.242 10.147 7.423 1.00 1.72 C ATOM 277 CD LYS 16 6.415 10.877 8.074 1.00 1.72 C ATOM 278 CE LYS 16 6.063 11.361 9.474 1.00 1.72 C ATOM 279 NZ LYS 16 7.210 12.066 10.126 1.00 1.72 N ATOM 293 N ASN 17 2.239 9.285 5.957 1.00 0.66 N ATOM 294 CA ASN 17 0.891 9.876 6.011 1.00 0.73 C ATOM 295 C ASN 17 -0.000 9.610 4.785 1.00 0.58 C ATOM 296 O ASN 17 -1.064 10.219 4.647 1.00 0.72 O ATOM 297 CB ASN 17 0.968 11.374 6.253 1.00 1.09 C ATOM 298 CG ASN 17 1.647 11.729 7.538 1.00 1.09 C ATOM 299 OD1 ASN 17 1.550 11.014 8.544 1.00 1.09 O ATOM 300 ND2 ASN 17 2.335 12.844 7.529 1.00 1.09 N ATOM 307 N CYS 18 0.384 8.668 3.933 1.00 0.40 N ATOM 308 CA CYS 18 -0.437 8.287 2.785 1.00 0.37 C ATOM 309 C CYS 18 -1.515 7.281 3.164 1.00 0.33 C ATOM 310 O CYS 18 -1.459 6.647 4.225 1.00 0.38 O ATOM 311 CB CYS 18 0.394 7.617 1.713 1.00 0.55 C ATOM 312 SG CYS 18 0.869 5.992 2.154 1.00 0.55 S ATOM 318 N GLU 19 -2.487 7.108 2.272 1.00 0.29 N ATOM 319 CA GLU 19 -3.509 6.083 2.456 1.00 0.30 C ATOM 320 C GLU 19 -3.198 4.879 1.576 1.00 0.27 C ATOM 321 O GLU 19 -3.057 5.019 0.357 1.00 0.25 O ATOM 322 CB GLU 19 -4.909 6.610 2.120 1.00 0.45 C ATOM 323 CG GLU 19 -6.023 5.574 2.302 1.00 0.45 C ATOM 324 CD GLU 19 -7.392 6.061 1.913 1.00 0.45 C ATOM 325 OE1 GLU 19 -7.550 7.216 1.570 1.00 0.45 O ATOM 326 OE2 GLU 19 -8.309 5.266 1.975 1.00 0.45 O ATOM 333 N VAL 20 -3.104 3.685 2.159 1.00 0.31 N ATOM 334 CA VAL 20 -2.795 2.533 1.315 1.00 0.30 C ATOM 335 C VAL 20 -3.908 1.500 1.356 1.00 0.34 C ATOM 336 O VAL 20 -4.295 1.028 2.426 1.00 0.42 O ATOM 337 CB VAL 20 -1.476 1.857 1.726 1.00 0.45 C ATOM 338 CG1 VAL 20 -1.189 0.701 0.806 1.00 0.45 C ATOM 339 CG2 VAL 20 -0.383 2.842 1.691 1.00 0.45 C ATOM 349 N ARG 21 -4.405 1.144 0.177 1.00 0.32 N ATOM 350 CA ARG 21 -5.461 0.156 0.058 1.00 0.38 C ATOM 351 C ARG 21 -4.915 -1.183 -0.446 1.00 0.33 C ATOM 352 O ARG 21 -4.028 -1.241 -1.308 1.00 0.39 O ATOM 353 CB ARG 21 -6.577 0.687 -0.823 1.00 0.57 C ATOM 354 CG ARG 21 -7.281 1.903 -0.205 1.00 0.57 C ATOM 355 CD ARG 21 -8.405 2.422 -1.015 1.00 0.57 C ATOM 356 NE ARG 21 -9.021 3.586 -0.360 1.00 0.57 N ATOM 357 CZ ARG 21 -10.121 4.244 -0.770 1.00 0.57 C ATOM 358 NH1 ARG 21 -10.781 3.881 -1.856 1.00 0.57 N ATOM 359 NH2 ARG 21 -10.519 5.271 -0.044 1.00 0.57 N ATOM 373 N CYS 22 -5.463 -2.266 0.101 1.00 0.42 N ATOM 374 CA CYS 22 -5.046 -3.616 -0.257 1.00 0.46 C ATOM 375 C CYS 22 -5.993 -4.350 -1.191 1.00 0.37 C ATOM 376 O CYS 22 -7.091 -4.734 -0.783 1.00 0.53 O ATOM 377 CB CYS 22 -4.918 -4.446 1.024 1.00 0.69 C ATOM 378 SG CYS 22 -4.366 -6.128 0.781 1.00 0.69 S ATOM 384 N ASP 23 -5.565 -4.566 -2.434 1.00 0.34 N ATOM 385 CA ASP 23 -6.358 -5.293 -3.411 1.00 0.40 C ATOM 386 C ASP 23 -5.989 -6.755 -3.305 1.00 0.43 C ATOM 387 O ASP 23 -4.966 -7.189 -3.847 1.00 0.43 O ATOM 388 CB ASP 23 -6.121 -4.789 -4.834 1.00 0.60 C ATOM 389 CG ASP 23 -6.969 -5.522 -5.906 1.00 0.60 C ATOM 390 OD1 ASP 23 -7.456 -6.637 -5.658 1.00 0.60 O ATOM 391 OD2 ASP 23 -7.099 -4.992 -6.989 1.00 0.60 O ATOM 396 N GLU 24 -6.823 -7.532 -2.624 1.00 0.58 N ATOM 397 CA GLU 24 -6.512 -8.924 -2.341 1.00 0.76 C ATOM 398 C GLU 24 -6.843 -9.862 -3.506 1.00 0.81 C ATOM 399 O GLU 24 -6.652 -11.076 -3.393 1.00 0.95 O ATOM 400 CB GLU 24 -7.255 -9.379 -1.077 1.00 1.14 C ATOM 401 CG GLU 24 -6.814 -8.667 0.220 1.00 1.14 C ATOM 402 CD GLU 24 -7.559 -9.148 1.461 1.00 1.14 C ATOM 403 OE1 GLU 24 -8.449 -9.941 1.301 1.00 1.14 O ATOM 404 OE2 GLU 24 -7.220 -8.754 2.568 1.00 1.14 O ATOM 411 N SER 25 -7.381 -9.317 -4.606 1.00 0.83 N ATOM 412 CA SER 25 -7.723 -10.147 -5.758 1.00 0.94 C ATOM 413 C SER 25 -6.643 -10.047 -6.827 1.00 0.82 C ATOM 414 O SER 25 -6.243 -11.053 -7.419 1.00 0.97 O ATOM 415 CB SER 25 -9.059 -9.727 -6.354 1.00 1.41 C ATOM 416 OG SER 25 -10.128 -9.960 -5.467 1.00 1.41 O ATOM 422 N ASN 26 -6.127 -8.831 -7.042 1.00 0.61 N ATOM 423 CA ASN 26 -5.099 -8.609 -8.060 1.00 0.62 C ATOM 424 C ASN 26 -3.720 -8.478 -7.428 1.00 0.52 C ATOM 425 O ASN 26 -2.743 -8.145 -8.096 1.00 0.66 O ATOM 426 CB ASN 26 -5.409 -7.366 -8.868 1.00 0.93 C ATOM 427 CG ASN 26 -6.658 -7.497 -9.689 1.00 0.93 C ATOM 428 OD1 ASN 26 -6.739 -8.304 -10.629 1.00 0.93 O ATOM 429 ND2 ASN 26 -7.650 -6.706 -9.350 1.00 0.93 N ATOM 436 N HIS 27 -3.658 -8.740 -6.133 1.00 0.43 N ATOM 437 CA HIS 27 -2.450 -8.672 -5.313 1.00 0.47 C ATOM 438 C HIS 27 -1.711 -7.347 -5.438 1.00 0.49 C ATOM 439 O HIS 27 -0.484 -7.290 -5.566 1.00 0.67 O ATOM 440 CB HIS 27 -1.537 -9.839 -5.657 1.00 0.70 C ATOM 441 CG HIS 27 -2.218 -11.129 -5.422 1.00 0.70 C ATOM 442 ND1 HIS 27 -2.436 -11.647 -4.153 1.00 0.70 N ATOM 443 CD2 HIS 27 -2.783 -11.997 -6.289 1.00 0.70 C ATOM 444 CE1 HIS 27 -3.094 -12.794 -4.269 1.00 0.70 C ATOM 445 NE2 HIS 27 -3.314 -13.020 -5.551 1.00 0.70 N ATOM 453 N CYS 28 -2.464 -6.263 -5.410 1.00 0.38 N ATOM 454 CA CYS 28 -1.868 -4.949 -5.585 1.00 0.40 C ATOM 455 C CYS 28 -2.002 -3.996 -4.412 1.00 0.37 C ATOM 456 O CYS 28 -3.026 -3.931 -3.722 1.00 0.51 O ATOM 457 CB CYS 28 -2.464 -4.270 -6.818 1.00 0.60 C ATOM 458 SG CYS 28 -2.139 -5.134 -8.359 1.00 0.60 S ATOM 464 N VAL 29 -0.978 -3.180 -4.270 1.00 0.32 N ATOM 465 CA VAL 29 -0.954 -2.125 -3.288 1.00 0.34 C ATOM 466 C VAL 29 -1.224 -0.790 -3.953 1.00 0.33 C ATOM 467 O VAL 29 -0.458 -0.365 -4.826 1.00 0.34 O ATOM 468 CB VAL 29 0.436 -2.046 -2.678 1.00 0.51 C ATOM 469 CG1 VAL 29 0.497 -0.966 -1.675 1.00 0.51 C ATOM 470 CG2 VAL 29 0.825 -3.366 -2.101 1.00 0.51 C ATOM 480 N GLU 30 -2.290 -0.117 -3.532 1.00 0.37 N ATOM 481 CA GLU 30 -2.632 1.183 -4.105 1.00 0.38 C ATOM 482 C GLU 30 -2.372 2.304 -3.106 1.00 0.29 C ATOM 483 O GLU 30 -2.996 2.364 -2.045 1.00 0.26 O ATOM 484 CB GLU 30 -4.090 1.207 -4.562 1.00 0.57 C ATOM 485 CG GLU 30 -4.510 2.516 -5.198 1.00 0.57 C ATOM 486 CD GLU 30 -5.908 2.508 -5.709 1.00 0.57 C ATOM 487 OE1 GLU 30 -6.815 2.440 -4.926 1.00 0.57 O ATOM 488 OE2 GLU 30 -6.069 2.576 -6.910 1.00 0.57 O ATOM 495 N VAL 31 -1.465 3.220 -3.449 1.00 0.31 N ATOM 496 CA VAL 31 -1.081 4.279 -2.525 1.00 0.32 C ATOM 497 C VAL 31 -1.561 5.657 -2.967 1.00 0.29 C ATOM 498 O VAL 31 -1.151 6.158 -4.017 1.00 0.33 O ATOM 499 CB VAL 31 0.460 4.347 -2.472 1.00 0.48 C ATOM 500 CG1 VAL 31 0.930 5.432 -1.503 1.00 0.48 C ATOM 501 CG2 VAL 31 1.051 2.983 -2.148 1.00 0.48 C ATOM 511 N ARG 32 -2.387 6.292 -2.139 1.00 0.28 N ATOM 512 CA ARG 32 -2.858 7.648 -2.411 1.00 0.32 C ATOM 513 C ARG 32 -1.944 8.604 -1.652 1.00 0.31 C ATOM 514 O ARG 32 -1.884 8.573 -0.417 1.00 0.31 O ATOM 515 CB ARG 32 -4.294 7.856 -1.964 1.00 0.48 C ATOM 516 CG ARG 32 -4.855 9.243 -2.276 1.00 0.48 C ATOM 517 CD ARG 32 -6.289 9.375 -1.896 1.00 0.48 C ATOM 518 NE ARG 32 -6.482 9.301 -0.437 1.00 0.48 N ATOM 519 CZ ARG 32 -6.370 10.330 0.429 1.00 0.48 C ATOM 520 NH1 ARG 32 -6.044 11.553 0.030 1.00 0.48 N ATOM 521 NH2 ARG 32 -6.602 10.077 1.697 1.00 0.48 N ATOM 535 N CYS 33 -1.231 9.475 -2.350 1.00 0.35 N ATOM 536 CA CYS 33 -0.277 10.315 -1.631 1.00 0.43 C ATOM 537 C CYS 33 -0.048 11.641 -2.342 1.00 0.51 C ATOM 538 O CYS 33 0.212 11.670 -3.544 1.00 0.57 O ATOM 539 CB CYS 33 1.042 9.555 -1.493 1.00 0.65 C ATOM 540 SG CYS 33 2.306 10.381 -0.541 1.00 0.65 S ATOM 546 N SER 34 -0.131 12.737 -1.584 1.00 0.65 N ATOM 547 CA SER 34 0.027 14.075 -2.149 1.00 0.81 C ATOM 548 C SER 34 -0.982 14.262 -3.271 1.00 0.73 C ATOM 549 O SER 34 -2.171 13.984 -3.093 1.00 0.72 O ATOM 550 CB SER 34 1.437 14.298 -2.661 1.00 1.22 C ATOM 551 OG SER 34 1.613 15.641 -3.014 1.00 1.22 O ATOM 557 N ASP 35 -0.521 14.737 -4.422 1.00 0.75 N ATOM 558 CA ASP 35 -1.360 14.953 -5.586 1.00 0.77 C ATOM 559 C ASP 35 -1.248 13.827 -6.621 1.00 0.71 C ATOM 560 O ASP 35 -1.645 13.993 -7.779 1.00 0.82 O ATOM 561 CB ASP 35 -1.025 16.316 -6.195 1.00 1.16 C ATOM 562 CG ASP 35 0.448 16.420 -6.553 1.00 1.16 C ATOM 563 OD1 ASP 35 1.186 15.555 -6.101 1.00 1.16 O ATOM 564 OD2 ASP 35 0.836 17.340 -7.239 1.00 1.16 O ATOM 569 N THR 36 -0.706 12.676 -6.220 1.00 0.60 N ATOM 570 CA THR 36 -0.531 11.567 -7.145 1.00 0.64 C ATOM 571 C THR 36 -0.806 10.201 -6.523 1.00 0.48 C ATOM 572 O THR 36 -1.435 10.075 -5.461 1.00 0.55 O ATOM 573 CB THR 36 0.892 11.585 -7.733 1.00 0.96 C ATOM 574 OG1 THR 36 0.960 10.636 -8.804 1.00 0.96 O ATOM 575 CG2 THR 36 1.931 11.232 -6.651 1.00 0.96 C ATOM 583 N LYS 37 -0.422 9.164 -7.263 1.00 0.42 N ATOM 584 CA LYS 37 -0.615 7.790 -6.832 1.00 0.35 C ATOM 585 C LYS 37 0.618 6.948 -7.115 1.00 0.35 C ATOM 586 O LYS 37 1.327 7.163 -8.102 1.00 0.39 O ATOM 587 CB LYS 37 -1.832 7.159 -7.516 1.00 0.52 C ATOM 588 CG LYS 37 -3.185 7.785 -7.138 1.00 0.52 C ATOM 589 CD LYS 37 -4.363 7.153 -7.897 1.00 0.52 C ATOM 590 CE LYS 37 -4.676 5.733 -7.409 1.00 0.52 C ATOM 591 NZ LYS 37 -5.939 5.204 -7.995 1.00 0.52 N ATOM 605 N TYR 38 0.838 5.960 -6.258 1.00 0.35 N ATOM 606 CA TYR 38 1.940 5.021 -6.425 1.00 0.40 C ATOM 607 C TYR 38 1.407 3.601 -6.325 1.00 0.41 C ATOM 608 O TYR 38 0.400 3.355 -5.654 1.00 0.42 O ATOM 609 CB TYR 38 3.021 5.251 -5.357 1.00 0.60 C ATOM 610 CG TYR 38 3.573 6.643 -5.335 1.00 0.60 C ATOM 611 CD1 TYR 38 2.982 7.607 -4.518 1.00 0.60 C ATOM 612 CD2 TYR 38 4.662 6.969 -6.112 1.00 0.60 C ATOM 613 CE1 TYR 38 3.501 8.882 -4.492 1.00 0.60 C ATOM 614 CE2 TYR 38 5.171 8.244 -6.082 1.00 0.60 C ATOM 615 CZ TYR 38 4.595 9.194 -5.276 1.00 0.60 C ATOM 616 OH TYR 38 5.117 10.463 -5.242 1.00 0.60 O ATOM 626 N THR 39 2.066 2.655 -6.984 1.00 0.41 N ATOM 627 CA THR 39 1.642 1.268 -6.844 1.00 0.40 C ATOM 628 C THR 39 2.793 0.313 -6.594 1.00 0.41 C ATOM 629 O THR 39 3.934 0.566 -6.991 1.00 0.51 O ATOM 630 CB THR 39 0.876 0.788 -8.095 1.00 0.60 C ATOM 631 OG1 THR 39 1.750 0.852 -9.238 1.00 0.60 O ATOM 632 CG2 THR 39 -0.362 1.655 -8.343 1.00 0.60 C ATOM 640 N LEU 40 2.447 -0.828 -6.005 1.00 0.40 N ATOM 641 CA LEU 40 3.369 -1.940 -5.759 1.00 0.50 C ATOM 642 C LEU 40 2.712 -3.311 -5.950 1.00 0.53 C ATOM 643 O LEU 40 1.616 -3.586 -5.452 1.00 0.57 O ATOM 644 CB LEU 40 3.983 -1.821 -4.341 1.00 0.75 C ATOM 645 CG LEU 40 4.868 -3.006 -3.810 1.00 0.75 C ATOM 646 CD1 LEU 40 6.143 -3.143 -4.611 1.00 0.75 C ATOM 647 CD2 LEU 40 5.193 -2.741 -2.355 1.00 0.75 C ATOM 659 N CYS 41 3.368 -4.183 -6.701 1.00 0.64 N ATOM 660 CA CYS 41 2.842 -5.525 -6.888 1.00 0.77 C ATOM 661 C CYS 41 4.008 -6.483 -7.099 1.00 0.90 C ATOM 662 O CYS 41 3.980 -7.616 -6.616 1.00 0.97 O ATOM 663 OXT CYS 41 5.083 -6.004 -7.451 1.00 0.97 O ATOM 664 CB CYS 41 1.886 -5.585 -8.082 1.00 1.16 C ATOM 665 SG CYS 41 1.086 -7.199 -8.305 1.00 1.16 S TER END