####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 334), selected 41 , name T0955TS441_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS441_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.27 1.27 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.27 1.27 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 3 - 41 0.98 1.31 LCS_AVERAGE: 91.91 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 41 41 3 3 5 11 15 29 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 21 41 41 7 16 29 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 39 41 41 7 29 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 39 41 41 10 30 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 39 41 41 10 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 39 41 41 16 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 39 41 41 15 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 39 41 41 16 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 39 41 41 16 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 39 41 41 16 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 39 41 41 16 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 39 41 41 16 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 39 41 41 16 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 39 41 41 15 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 39 41 41 16 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 39 41 41 10 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 39 41 41 9 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 39 41 41 10 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 39 41 41 12 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 39 41 41 10 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 39 41 41 15 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 39 41 41 3 5 20 35 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 39 41 41 3 20 30 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 39 41 41 7 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 39 41 41 4 11 25 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 39 41 41 4 19 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 39 41 41 7 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 39 41 41 16 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 39 41 41 16 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 39 41 41 16 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 39 41 41 16 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 39 41 41 16 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 39 41 41 8 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 39 41 41 16 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 39 41 41 16 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 39 41 41 16 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 39 41 41 10 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 39 41 41 3 14 30 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 39 41 41 3 28 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 39 41 41 10 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 39 41 41 10 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 97.30 ( 91.91 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 16 31 35 38 40 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 39.02 75.61 85.37 92.68 97.56 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.32 0.64 0.77 0.91 1.02 1.02 1.02 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 GDT RMS_ALL_AT 1.40 1.33 1.30 1.29 1.30 1.30 1.30 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 4.736 0 0.066 0.656 7.475 3.182 2.424 6.510 LGA Q 2 Q 2 1.764 0 0.217 0.958 2.914 63.182 45.859 2.774 LGA E 3 E 3 1.106 0 0.094 1.122 2.759 65.455 55.556 2.680 LGA T 4 T 4 0.959 0 0.011 1.105 2.419 77.727 64.675 2.419 LGA R 5 R 5 0.626 0 0.020 0.299 3.612 81.818 55.537 3.612 LGA K 6 K 6 0.569 0 0.032 0.776 2.721 86.364 74.949 0.516 LGA K 7 K 7 0.812 0 0.024 0.661 3.059 81.818 56.566 3.059 LGA C 8 C 8 0.762 0 0.013 0.016 0.913 81.818 81.818 0.654 LGA T 9 T 9 0.854 0 0.025 0.102 1.133 81.818 79.481 0.653 LGA E 10 E 10 0.951 0 0.019 0.641 2.232 81.818 66.667 2.232 LGA M 11 M 11 0.706 0 0.020 0.885 3.859 81.818 72.955 3.859 LGA K 12 K 12 0.692 0 0.042 0.637 2.279 81.818 72.121 2.124 LGA K 13 K 13 0.952 0 0.041 0.582 2.473 73.636 73.333 2.473 LGA K 14 K 14 1.062 0 0.036 0.620 4.520 73.636 55.758 4.520 LGA F 15 F 15 0.146 0 0.089 0.221 2.269 90.909 68.595 2.264 LGA K 16 K 16 0.753 0 0.040 1.248 6.013 82.273 51.111 5.604 LGA N 17 N 17 1.168 0 0.205 0.467 2.912 77.727 63.182 2.912 LGA C 18 C 18 1.169 0 0.034 0.047 1.263 73.636 70.909 1.263 LGA E 19 E 19 0.791 0 0.099 0.350 1.772 86.364 78.586 0.974 LGA V 20 V 20 0.745 0 0.027 0.049 0.964 81.818 81.818 0.570 LGA R 21 R 21 0.632 0 0.172 1.204 5.950 86.364 43.967 5.950 LGA C 22 C 22 2.477 0 0.013 0.757 3.410 44.545 35.758 3.410 LGA D 23 D 23 1.925 0 0.277 1.380 5.629 39.545 27.273 3.702 LGA E 24 E 24 0.842 0 0.013 0.606 3.243 71.364 49.899 3.243 LGA S 25 S 25 2.353 0 0.073 0.662 2.934 38.636 36.667 2.496 LGA N 26 N 26 1.515 0 0.082 1.182 5.695 66.364 41.591 5.695 LGA H 27 H 27 0.783 0 0.089 0.263 2.268 77.727 60.545 2.268 LGA C 28 C 28 0.692 0 0.086 0.822 3.268 90.909 74.545 3.268 LGA V 29 V 29 0.519 0 0.062 0.084 0.973 81.818 81.818 0.792 LGA E 30 E 30 0.418 0 0.116 0.685 2.096 86.818 79.394 2.096 LGA V 31 V 31 0.540 0 0.065 0.091 0.776 86.364 84.416 0.743 LGA R 32 R 32 0.556 0 0.131 0.993 7.327 86.364 48.926 7.327 LGA C 33 C 33 0.545 0 0.547 1.053 3.622 64.545 64.242 2.538 LGA S 34 S 34 0.527 0 0.242 0.592 2.690 86.364 75.758 2.690 LGA D 35 D 35 0.693 0 0.146 0.944 5.130 81.818 50.455 5.130 LGA T 36 T 36 0.693 0 0.048 0.150 1.127 81.818 79.481 1.127 LGA K 37 K 37 0.795 0 0.132 1.300 3.677 66.818 52.929 3.677 LGA Y 38 Y 38 1.702 0 0.024 1.354 4.240 74.545 45.909 4.240 LGA T 39 T 39 1.208 0 0.103 0.114 2.435 58.636 49.870 2.001 LGA L 40 L 40 0.210 0 0.043 1.000 4.055 95.455 65.455 4.055 LGA C 41 C 41 0.453 1 0.101 0.118 0.663 95.455 80.519 0.565 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 334 99.70 41 41 SUMMARY(RMSD_GDC): 1.273 1.366 2.083 74.900 61.008 34.013 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.27 92.073 96.021 2.985 LGA_LOCAL RMSD: 1.273 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.273 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.273 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.843492 * X + 0.458416 * Y + -0.279958 * Z + -4.846506 Y_new = -0.532775 * X + 0.647685 * Y + -0.544660 * Z + -11.716202 Z_new = -0.068357 * X + 0.608571 * Y + 0.790550 * Z + 1.405058 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.563353 0.068410 0.656058 [DEG: -32.2778 3.9196 37.5893 ] ZXZ: -0.474788 0.659090 -0.111855 [DEG: -27.2034 37.7631 -6.4088 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS441_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS441_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.27 96.021 1.27 REMARK ---------------------------------------------------------- MOLECULE T0955TS441_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 1 N SER 1 -4.847 -11.716 1.405 1.00 0.00 N ATOM 2 CA SER 1 -3.617 -12.493 1.305 1.00 0.00 C ATOM 3 C SER 1 -2.501 -11.867 2.132 1.00 0.00 C ATOM 4 O SER 1 -2.449 -10.649 2.301 1.00 0.00 O ATOM 5 CB SER 1 -3.184 -12.602 -0.143 1.00 0.00 C ATOM 6 OG SER 1 -2.835 -11.347 -0.659 1.00 0.00 O ATOM 14 N GLN 2 -1.609 -12.707 2.645 1.00 0.00 N ATOM 15 CA GLN 2 -0.476 -12.235 3.432 1.00 0.00 C ATOM 16 C GLN 2 0.525 -11.486 2.561 1.00 0.00 C ATOM 17 O GLN 2 1.129 -10.505 2.996 1.00 0.00 O ATOM 18 CB GLN 2 0.217 -13.407 4.133 1.00 0.00 C ATOM 19 CG GLN 2 1.347 -12.998 5.061 1.00 0.00 C ATOM 20 CD GLN 2 0.869 -12.124 6.205 1.00 0.00 C ATOM 21 OE1 GLN 2 -0.114 -12.444 6.880 1.00 0.00 O ATOM 22 NE2 GLN 2 1.562 -11.014 6.430 1.00 0.00 N ATOM 31 N GLU 3 0.696 -11.953 1.329 1.00 0.00 N ATOM 32 CA GLU 3 1.606 -11.314 0.387 1.00 0.00 C ATOM 33 C GLU 3 1.232 -9.854 0.163 1.00 0.00 C ATOM 34 O GLU 3 2.082 -8.966 0.245 1.00 0.00 O ATOM 35 CB GLU 3 1.603 -12.061 -0.949 1.00 0.00 C ATOM 36 CG GLU 3 2.520 -11.463 -2.006 1.00 0.00 C ATOM 37 CD GLU 3 2.496 -12.226 -3.301 1.00 0.00 C ATOM 38 OE1 GLU 3 1.825 -13.228 -3.366 1.00 0.00 O ATOM 39 OE2 GLU 3 3.151 -11.808 -4.226 1.00 0.00 O ATOM 46 N THR 4 -0.044 -9.612 -0.118 1.00 0.00 N ATOM 47 CA THR 4 -0.528 -8.261 -0.379 1.00 0.00 C ATOM 48 C THR 4 -0.385 -7.377 0.854 1.00 0.00 C ATOM 49 O THR 4 0.058 -6.232 0.760 1.00 0.00 O ATOM 50 CB THR 4 -1.998 -8.278 -0.835 1.00 0.00 C ATOM 51 OG1 THR 4 -2.118 -9.047 -2.041 1.00 0.00 O ATOM 52 CG2 THR 4 -2.494 -6.863 -1.090 1.00 0.00 C ATOM 60 N ARG 5 -0.762 -7.915 2.008 1.00 0.00 N ATOM 61 CA ARG 5 -0.740 -7.154 3.251 1.00 0.00 C ATOM 62 C ARG 5 0.686 -6.807 3.660 1.00 0.00 C ATOM 63 O ARG 5 0.937 -5.747 4.232 1.00 0.00 O ATOM 64 CB ARG 5 -1.409 -7.937 4.371 1.00 0.00 C ATOM 65 CG ARG 5 -2.919 -8.067 4.248 1.00 0.00 C ATOM 66 CD ARG 5 -3.491 -8.895 5.341 1.00 0.00 C ATOM 67 NE ARG 5 -4.933 -9.033 5.219 1.00 0.00 N ATOM 68 CZ ARG 5 -5.702 -9.775 6.038 1.00 0.00 C ATOM 69 NH1 ARG 5 -5.154 -10.438 7.033 1.00 0.00 N ATOM 70 NH2 ARG 5 -7.008 -9.836 5.844 1.00 0.00 N ATOM 84 N LYS 6 1.616 -7.708 3.364 1.00 0.00 N ATOM 85 CA LYS 6 3.036 -7.432 3.547 1.00 0.00 C ATOM 86 C LYS 6 3.487 -6.265 2.679 1.00 0.00 C ATOM 87 O LYS 6 4.080 -5.304 3.171 1.00 0.00 O ATOM 88 CB LYS 6 3.868 -8.675 3.232 1.00 0.00 C ATOM 89 CG LYS 6 5.371 -8.485 3.395 1.00 0.00 C ATOM 90 CD LYS 6 6.127 -9.771 3.097 1.00 0.00 C ATOM 91 CE LYS 6 7.618 -9.610 3.355 1.00 0.00 C ATOM 92 NZ LYS 6 8.265 -8.729 2.344 1.00 0.00 N ATOM 106 N LYS 7 3.203 -6.353 1.384 1.00 0.00 N ATOM 107 CA LYS 7 3.580 -5.304 0.444 1.00 0.00 C ATOM 108 C LYS 7 2.900 -3.985 0.790 1.00 0.00 C ATOM 109 O LYS 7 3.498 -2.917 0.668 1.00 0.00 O ATOM 110 CB LYS 7 3.231 -5.716 -0.987 1.00 0.00 C ATOM 111 CG LYS 7 4.102 -6.833 -1.550 1.00 0.00 C ATOM 112 CD LYS 7 3.613 -7.277 -2.920 1.00 0.00 C ATOM 113 CE LYS 7 4.492 -8.379 -3.493 1.00 0.00 C ATOM 114 NZ LYS 7 3.927 -8.947 -4.746 1.00 0.00 N ATOM 128 N CYS 8 1.646 -4.067 1.220 1.00 0.00 N ATOM 129 CA CYS 8 0.899 -2.884 1.631 1.00 0.00 C ATOM 130 C CYS 8 1.529 -2.232 2.855 1.00 0.00 C ATOM 131 O CYS 8 1.736 -1.019 2.885 1.00 0.00 O ATOM 132 CB CYS 8 -0.553 -3.248 1.946 1.00 0.00 C ATOM 133 SG CYS 8 -1.592 -1.831 2.374 1.00 0.00 S ATOM 139 N THR 9 1.833 -3.044 3.862 1.00 0.00 N ATOM 140 CA THR 9 2.467 -2.552 5.079 1.00 0.00 C ATOM 141 C THR 9 3.782 -1.847 4.770 1.00 0.00 C ATOM 142 O THR 9 4.098 -0.815 5.360 1.00 0.00 O ATOM 143 CB THR 9 2.716 -3.697 6.077 1.00 0.00 C ATOM 144 OG1 THR 9 1.466 -4.300 6.439 1.00 0.00 O ATOM 145 CG2 THR 9 3.404 -3.174 7.329 1.00 0.00 C ATOM 153 N GLU 10 4.545 -2.413 3.841 1.00 0.00 N ATOM 154 CA GLU 10 5.805 -1.815 3.416 1.00 0.00 C ATOM 155 C GLU 10 5.585 -0.434 2.812 1.00 0.00 C ATOM 156 O GLU 10 6.352 0.494 3.064 1.00 0.00 O ATOM 157 CB GLU 10 6.511 -2.719 2.403 1.00 0.00 C ATOM 158 CG GLU 10 7.058 -4.013 2.990 1.00 0.00 C ATOM 159 CD GLU 10 7.543 -4.972 1.938 1.00 0.00 C ATOM 160 OE1 GLU 10 7.447 -4.650 0.778 1.00 0.00 O ATOM 161 OE2 GLU 10 8.009 -6.028 2.296 1.00 0.00 O ATOM 168 N MET 11 4.531 -0.306 2.013 1.00 0.00 N ATOM 169 CA MET 11 4.178 0.974 1.411 1.00 0.00 C ATOM 170 C MET 11 3.673 1.956 2.460 1.00 0.00 C ATOM 171 O MET 11 3.871 3.165 2.339 1.00 0.00 O ATOM 172 CB MET 11 3.128 0.773 0.320 1.00 0.00 C ATOM 173 CG MET 11 3.633 0.032 -0.910 1.00 0.00 C ATOM 174 SD MET 11 5.018 0.869 -1.708 1.00 0.00 S ATOM 175 CE MET 11 4.176 2.238 -2.497 1.00 0.00 C ATOM 185 N LYS 12 3.019 1.430 3.489 1.00 0.00 N ATOM 186 CA LYS 12 2.600 2.240 4.626 1.00 0.00 C ATOM 187 C LYS 12 3.801 2.808 5.371 1.00 0.00 C ATOM 188 O LYS 12 3.791 3.962 5.799 1.00 0.00 O ATOM 189 CB LYS 12 1.732 1.418 5.580 1.00 0.00 C ATOM 190 CG LYS 12 0.333 1.120 5.058 1.00 0.00 C ATOM 191 CD LYS 12 -0.479 0.326 6.071 1.00 0.00 C ATOM 192 CE LYS 12 -1.904 0.103 5.587 1.00 0.00 C ATOM 193 NZ LYS 12 -2.705 -0.684 6.564 1.00 0.00 N ATOM 207 N LYS 13 4.838 1.990 5.522 1.00 0.00 N ATOM 208 CA LYS 13 6.078 2.433 6.147 1.00 0.00 C ATOM 209 C LYS 13 6.758 3.514 5.317 1.00 0.00 C ATOM 210 O LYS 13 7.318 4.467 5.860 1.00 0.00 O ATOM 211 CB LYS 13 7.027 1.250 6.350 1.00 0.00 C ATOM 212 CG LYS 13 6.584 0.265 7.423 1.00 0.00 C ATOM 213 CD LYS 13 7.557 -0.898 7.542 1.00 0.00 C ATOM 214 CE LYS 13 7.122 -1.877 8.622 1.00 0.00 C ATOM 215 NZ LYS 13 8.057 -3.030 8.738 1.00 0.00 N ATOM 229 N LYS 14 6.706 3.360 3.998 1.00 0.00 N ATOM 230 CA LYS 14 7.272 4.350 3.089 1.00 0.00 C ATOM 231 C LYS 14 6.453 5.635 3.096 1.00 0.00 C ATOM 232 O LYS 14 7.006 6.735 3.072 1.00 0.00 O ATOM 233 CB LYS 14 7.355 3.787 1.670 1.00 0.00 C ATOM 234 CG LYS 14 8.399 2.693 1.489 1.00 0.00 C ATOM 235 CD LYS 14 8.397 2.159 0.064 1.00 0.00 C ATOM 236 CE LYS 14 9.429 1.055 -0.116 1.00 0.00 C ATOM 237 NZ LYS 14 9.429 0.514 -1.503 1.00 0.00 N ATOM 251 N PHE 15 5.133 5.489 3.128 1.00 0.00 N ATOM 252 CA PHE 15 4.233 6.632 3.031 1.00 0.00 C ATOM 253 C PHE 15 3.231 6.644 4.178 1.00 0.00 C ATOM 254 O PHE 15 2.041 6.402 3.978 1.00 0.00 O ATOM 255 CB PHE 15 3.487 6.614 1.695 1.00 0.00 C ATOM 256 CG PHE 15 4.392 6.602 0.496 1.00 0.00 C ATOM 257 CD1 PHE 15 4.655 5.421 -0.181 1.00 0.00 C ATOM 258 CD2 PHE 15 4.982 7.772 0.043 1.00 0.00 C ATOM 259 CE1 PHE 15 5.487 5.409 -1.285 1.00 0.00 C ATOM 260 CE2 PHE 15 5.813 7.764 -1.060 1.00 0.00 C ATOM 261 CZ PHE 15 6.066 6.581 -1.724 1.00 0.00 C ATOM 271 N LYS 16 3.719 6.928 5.381 1.00 0.00 N ATOM 272 CA LYS 16 2.895 6.846 6.580 1.00 0.00 C ATOM 273 C LYS 16 1.828 7.932 6.592 1.00 0.00 C ATOM 274 O LYS 16 0.779 7.779 7.216 1.00 0.00 O ATOM 275 CB LYS 16 3.765 6.950 7.836 1.00 0.00 C ATOM 276 CG LYS 16 4.666 5.747 8.077 1.00 0.00 C ATOM 277 CD LYS 16 5.513 5.934 9.327 1.00 0.00 C ATOM 278 CE LYS 16 6.420 4.736 9.568 1.00 0.00 C ATOM 279 NZ LYS 16 7.281 4.920 10.767 1.00 0.00 N ATOM 293 N ASN 17 2.102 9.031 5.896 1.00 0.00 N ATOM 294 CA ASN 17 1.210 10.184 5.901 1.00 0.00 C ATOM 295 C ASN 17 0.315 10.195 4.669 1.00 0.00 C ATOM 296 O ASN 17 -0.334 11.197 4.370 1.00 0.00 O ATOM 297 CB ASN 17 2.004 11.473 5.996 1.00 0.00 C ATOM 298 CG ASN 17 2.688 11.634 7.326 1.00 0.00 C ATOM 299 OD1 ASN 17 2.120 11.309 8.374 1.00 0.00 O ATOM 300 ND2 ASN 17 3.899 12.130 7.303 1.00 0.00 N ATOM 307 N CYS 18 0.285 9.073 3.956 1.00 0.00 N ATOM 308 CA CYS 18 -0.523 8.955 2.749 1.00 0.00 C ATOM 309 C CYS 18 -1.595 7.884 2.906 1.00 0.00 C ATOM 310 O CYS 18 -1.533 7.059 3.818 1.00 0.00 O ATOM 311 CB CYS 18 0.356 8.615 1.544 1.00 0.00 C ATOM 312 SG CYS 18 1.656 9.829 1.213 1.00 0.00 S ATOM 318 N GLU 19 -2.578 7.902 2.013 1.00 0.00 N ATOM 319 CA GLU 19 -3.646 6.909 2.028 1.00 0.00 C ATOM 320 C GLU 19 -3.232 5.643 1.289 1.00 0.00 C ATOM 321 O GLU 19 -3.172 5.623 0.059 1.00 0.00 O ATOM 322 CB GLU 19 -4.918 7.485 1.402 1.00 0.00 C ATOM 323 CG GLU 19 -6.108 6.535 1.410 1.00 0.00 C ATOM 324 CD GLU 19 -7.343 7.141 0.804 1.00 0.00 C ATOM 325 OE1 GLU 19 -7.328 8.314 0.518 1.00 0.00 O ATOM 326 OE2 GLU 19 -8.304 6.429 0.627 1.00 0.00 O ATOM 333 N VAL 20 -2.948 4.588 2.045 1.00 0.00 N ATOM 334 CA VAL 20 -2.437 3.350 1.471 1.00 0.00 C ATOM 335 C VAL 20 -3.490 2.250 1.508 1.00 0.00 C ATOM 336 O VAL 20 -3.843 1.752 2.577 1.00 0.00 O ATOM 337 CB VAL 20 -1.185 2.883 2.236 1.00 0.00 C ATOM 338 CG1 VAL 20 -0.638 1.599 1.630 1.00 0.00 C ATOM 339 CG2 VAL 20 -0.130 3.979 2.219 1.00 0.00 C ATOM 349 N ARG 21 -3.989 1.876 0.335 1.00 0.00 N ATOM 350 CA ARG 21 -4.902 0.745 0.217 1.00 0.00 C ATOM 351 C ARG 21 -4.283 -0.380 -0.604 1.00 0.00 C ATOM 352 O ARG 21 -3.200 -0.226 -1.168 1.00 0.00 O ATOM 353 CB ARG 21 -6.210 1.179 -0.429 1.00 0.00 C ATOM 354 CG ARG 21 -7.004 2.207 0.362 1.00 0.00 C ATOM 355 CD ARG 21 -8.199 2.672 -0.386 1.00 0.00 C ATOM 356 NE ARG 21 -8.891 3.746 0.310 1.00 0.00 N ATOM 357 CZ ARG 21 -9.903 3.565 1.181 1.00 0.00 C ATOM 358 NH1 ARG 21 -10.329 2.351 1.452 1.00 0.00 N ATOM 359 NH2 ARG 21 -10.467 4.609 1.763 1.00 0.00 N ATOM 373 N CYS 22 -4.978 -1.511 -0.666 1.00 0.00 N ATOM 374 CA CYS 22 -4.490 -2.669 -1.405 1.00 0.00 C ATOM 375 C CYS 22 -5.636 -3.591 -1.804 1.00 0.00 C ATOM 376 O CYS 22 -6.663 -3.646 -1.129 1.00 0.00 O ATOM 377 CB CYS 22 -3.478 -3.454 -0.569 1.00 0.00 C ATOM 378 SG CYS 22 -4.177 -4.211 0.917 1.00 0.00 S ATOM 384 N ASP 23 -5.453 -4.313 -2.904 1.00 0.00 N ATOM 385 CA ASP 23 -6.375 -5.375 -3.285 1.00 0.00 C ATOM 386 C ASP 23 -5.798 -6.748 -2.966 1.00 0.00 C ATOM 387 O ASP 23 -4.850 -7.199 -3.607 1.00 0.00 O ATOM 388 CB ASP 23 -6.704 -5.288 -4.778 1.00 0.00 C ATOM 389 CG ASP 23 -7.682 -6.364 -5.233 1.00 0.00 C ATOM 390 OD1 ASP 23 -7.726 -7.400 -4.611 1.00 0.00 O ATOM 391 OD2 ASP 23 -8.375 -6.140 -6.197 1.00 0.00 O ATOM 396 N GLU 24 -6.377 -7.409 -1.969 1.00 0.00 N ATOM 397 CA GLU 24 -5.802 -8.635 -1.428 1.00 0.00 C ATOM 398 C GLU 24 -5.795 -9.746 -2.470 1.00 0.00 C ATOM 399 O GLU 24 -4.935 -10.627 -2.446 1.00 0.00 O ATOM 400 CB GLU 24 -6.581 -9.088 -0.190 1.00 0.00 C ATOM 401 CG GLU 24 -6.372 -8.216 1.039 1.00 0.00 C ATOM 402 CD GLU 24 -7.079 -8.741 2.257 1.00 0.00 C ATOM 403 OE1 GLU 24 -7.850 -9.661 2.123 1.00 0.00 O ATOM 404 OE2 GLU 24 -6.847 -8.223 3.324 1.00 0.00 O ATOM 411 N SER 25 -6.758 -9.700 -3.384 1.00 0.00 N ATOM 412 CA SER 25 -6.969 -10.789 -4.331 1.00 0.00 C ATOM 413 C SER 25 -6.126 -10.600 -5.585 1.00 0.00 C ATOM 414 O SER 25 -5.704 -11.571 -6.213 1.00 0.00 O ATOM 415 CB SER 25 -8.435 -10.878 -4.705 1.00 0.00 C ATOM 416 OG SER 25 -8.842 -9.743 -5.419 1.00 0.00 O ATOM 422 N ASN 26 -5.884 -9.344 -5.945 1.00 0.00 N ATOM 423 CA ASN 26 -5.137 -9.024 -7.156 1.00 0.00 C ATOM 424 C ASN 26 -3.734 -8.533 -6.825 1.00 0.00 C ATOM 425 O ASN 26 -2.928 -8.279 -7.720 1.00 0.00 O ATOM 426 CB ASN 26 -5.882 -7.995 -7.986 1.00 0.00 C ATOM 427 CG ASN 26 -7.126 -8.553 -8.618 1.00 0.00 C ATOM 428 OD1 ASN 26 -7.065 -9.506 -9.404 1.00 0.00 O ATOM 429 ND2 ASN 26 -8.255 -7.978 -8.290 1.00 0.00 N ATOM 436 N HIS 27 -3.447 -8.402 -5.534 1.00 0.00 N ATOM 437 CA HIS 27 -2.117 -8.015 -5.080 1.00 0.00 C ATOM 438 C HIS 27 -1.723 -6.651 -5.631 1.00 0.00 C ATOM 439 O HIS 27 -0.620 -6.475 -6.149 1.00 0.00 O ATOM 440 CB HIS 27 -1.077 -9.060 -5.498 1.00 0.00 C ATOM 441 CG HIS 27 -1.357 -10.432 -4.967 1.00 0.00 C ATOM 442 ND1 HIS 27 -1.148 -10.776 -3.647 1.00 0.00 N ATOM 443 CD2 HIS 27 -1.828 -11.545 -5.577 1.00 0.00 C ATOM 444 CE1 HIS 27 -1.479 -12.043 -3.469 1.00 0.00 C ATOM 445 NE2 HIS 27 -1.894 -12.532 -4.624 1.00 0.00 N ATOM 453 N CYS 28 -2.629 -5.687 -5.516 1.00 0.00 N ATOM 454 CA CYS 28 -2.405 -4.353 -6.061 1.00 0.00 C ATOM 455 C CYS 28 -2.496 -3.290 -4.974 1.00 0.00 C ATOM 456 O CYS 28 -3.581 -2.986 -4.479 1.00 0.00 O ATOM 457 CB CYS 28 -3.424 -4.042 -7.157 1.00 0.00 C ATOM 458 SG CYS 28 -3.221 -2.411 -7.914 1.00 0.00 S ATOM 464 N VAL 29 -1.349 -2.729 -4.605 1.00 0.00 N ATOM 465 CA VAL 29 -1.298 -1.695 -3.577 1.00 0.00 C ATOM 466 C VAL 29 -1.378 -0.304 -4.191 1.00 0.00 C ATOM 467 O VAL 29 -0.633 0.020 -5.118 1.00 0.00 O ATOM 468 CB VAL 29 0.001 -1.819 -2.760 1.00 0.00 C ATOM 469 CG1 VAL 29 0.071 -0.726 -1.702 1.00 0.00 C ATOM 470 CG2 VAL 29 0.080 -3.196 -2.118 1.00 0.00 C ATOM 480 N GLU 30 -2.284 0.516 -3.671 1.00 0.00 N ATOM 481 CA GLU 30 -2.538 1.836 -4.237 1.00 0.00 C ATOM 482 C GLU 30 -2.362 2.927 -3.189 1.00 0.00 C ATOM 483 O GLU 30 -3.063 2.947 -2.177 1.00 0.00 O ATOM 484 CB GLU 30 -3.949 1.902 -4.825 1.00 0.00 C ATOM 485 CG GLU 30 -4.302 3.238 -5.464 1.00 0.00 C ATOM 486 CD GLU 30 -5.686 3.259 -6.049 1.00 0.00 C ATOM 487 OE1 GLU 30 -6.357 2.258 -5.975 1.00 0.00 O ATOM 488 OE2 GLU 30 -6.074 4.278 -6.572 1.00 0.00 O ATOM 495 N VAL 31 -1.422 3.833 -3.437 1.00 0.00 N ATOM 496 CA VAL 31 -1.120 4.902 -2.493 1.00 0.00 C ATOM 497 C VAL 31 -1.467 6.266 -3.074 1.00 0.00 C ATOM 498 O VAL 31 -1.028 6.614 -4.170 1.00 0.00 O ATOM 499 CB VAL 31 0.373 4.873 -2.114 1.00 0.00 C ATOM 500 CG1 VAL 31 0.696 5.992 -1.135 1.00 0.00 C ATOM 501 CG2 VAL 31 0.732 3.518 -1.523 1.00 0.00 C ATOM 511 N ARG 32 -2.258 7.035 -2.334 1.00 0.00 N ATOM 512 CA ARG 32 -2.628 8.382 -2.753 1.00 0.00 C ATOM 513 C ARG 32 -1.858 9.434 -1.965 1.00 0.00 C ATOM 514 O ARG 32 -1.975 9.518 -0.743 1.00 0.00 O ATOM 515 CB ARG 32 -4.121 8.609 -2.570 1.00 0.00 C ATOM 516 CG ARG 32 -4.619 9.974 -3.016 1.00 0.00 C ATOM 517 CD ARG 32 -6.093 10.092 -2.878 1.00 0.00 C ATOM 518 NE ARG 32 -6.513 10.063 -1.486 1.00 0.00 N ATOM 519 CZ ARG 32 -6.594 11.145 -0.688 1.00 0.00 C ATOM 520 NH1 ARG 32 -6.284 12.333 -1.159 1.00 0.00 N ATOM 521 NH2 ARG 32 -6.987 11.013 0.567 1.00 0.00 N ATOM 535 N CYS 33 -1.069 10.236 -2.673 1.00 0.00 N ATOM 536 CA CYS 33 -0.325 11.325 -2.050 1.00 0.00 C ATOM 537 C CYS 33 -0.530 12.633 -2.803 1.00 0.00 C ATOM 538 O CYS 33 0.269 12.994 -3.668 1.00 0.00 O ATOM 539 CB CYS 33 1.167 10.998 -2.002 1.00 0.00 C ATOM 540 SG CYS 33 2.172 12.254 -1.176 1.00 0.00 S ATOM 546 N SER 34 -1.603 13.340 -2.469 1.00 0.00 N ATOM 547 CA SER 34 -1.991 14.538 -3.204 1.00 0.00 C ATOM 548 C SER 34 -2.130 14.250 -4.694 1.00 0.00 C ATOM 549 O SER 34 -2.970 13.451 -5.105 1.00 0.00 O ATOM 550 CB SER 34 -0.968 15.638 -2.986 1.00 0.00 C ATOM 551 OG SER 34 -1.411 16.851 -3.530 1.00 0.00 O ATOM 557 N ASP 35 -1.301 14.908 -5.498 1.00 0.00 N ATOM 558 CA ASP 35 -1.392 14.794 -6.949 1.00 0.00 C ATOM 559 C ASP 35 -0.522 13.656 -7.467 1.00 0.00 C ATOM 560 O ASP 35 -0.496 13.379 -8.667 1.00 0.00 O ATOM 561 CB ASP 35 -0.976 16.107 -7.617 1.00 0.00 C ATOM 562 CG ASP 35 -1.941 17.249 -7.330 1.00 0.00 C ATOM 563 OD1 ASP 35 -3.077 16.978 -7.025 1.00 0.00 O ATOM 564 OD2 ASP 35 -1.531 18.382 -7.419 1.00 0.00 O ATOM 569 N THR 36 0.189 12.998 -6.557 1.00 0.00 N ATOM 570 CA THR 36 1.055 11.884 -6.921 1.00 0.00 C ATOM 571 C THR 36 0.559 10.579 -6.310 1.00 0.00 C ATOM 572 O THR 36 0.244 10.520 -5.122 1.00 0.00 O ATOM 573 CB THR 36 2.507 12.143 -6.478 1.00 0.00 C ATOM 574 OG1 THR 36 3.005 13.319 -7.130 1.00 0.00 O ATOM 575 CG2 THR 36 3.392 10.958 -6.832 1.00 0.00 C ATOM 583 N LYS 37 0.493 9.535 -7.130 1.00 0.00 N ATOM 584 CA LYS 37 0.044 8.227 -6.670 1.00 0.00 C ATOM 585 C LYS 37 1.097 7.158 -6.937 1.00 0.00 C ATOM 586 O LYS 37 1.910 7.290 -7.851 1.00 0.00 O ATOM 587 CB LYS 37 -1.274 7.846 -7.344 1.00 0.00 C ATOM 588 CG LYS 37 -2.443 8.760 -7.003 1.00 0.00 C ATOM 589 CD LYS 37 -3.712 8.327 -7.721 1.00 0.00 C ATOM 590 CE LYS 37 -4.262 7.032 -7.142 1.00 0.00 C ATOM 591 NZ LYS 37 -5.559 6.651 -7.764 1.00 0.00 N ATOM 605 N TYR 38 1.077 6.101 -6.132 1.00 0.00 N ATOM 606 CA TYR 38 2.047 5.020 -6.262 1.00 0.00 C ATOM 607 C TYR 38 1.354 3.670 -6.388 1.00 0.00 C ATOM 608 O TYR 38 0.289 3.452 -5.810 1.00 0.00 O ATOM 609 CB TYR 38 3.006 5.016 -5.069 1.00 0.00 C ATOM 610 CG TYR 38 3.700 6.340 -4.839 1.00 0.00 C ATOM 611 CD1 TYR 38 3.108 7.304 -4.036 1.00 0.00 C ATOM 612 CD2 TYR 38 4.929 6.590 -5.431 1.00 0.00 C ATOM 613 CE1 TYR 38 3.742 8.513 -3.826 1.00 0.00 C ATOM 614 CE2 TYR 38 5.563 7.800 -5.221 1.00 0.00 C ATOM 615 CZ TYR 38 4.974 8.758 -4.421 1.00 0.00 C ATOM 616 OH TYR 38 5.605 9.963 -4.212 1.00 0.00 O ATOM 626 N THR 39 1.964 2.766 -7.146 1.00 0.00 N ATOM 627 CA THR 39 1.411 1.431 -7.341 1.00 0.00 C ATOM 628 C THR 39 2.469 0.359 -7.112 1.00 0.00 C ATOM 629 O THR 39 3.584 0.453 -7.625 1.00 0.00 O ATOM 630 CB THR 39 0.817 1.278 -8.754 1.00 0.00 C ATOM 631 OG1 THR 39 -0.225 2.244 -8.944 1.00 0.00 O ATOM 632 CG2 THR 39 0.247 -0.120 -8.943 1.00 0.00 C ATOM 640 N LEU 40 2.111 -0.661 -6.339 1.00 0.00 N ATOM 641 CA LEU 40 3.005 -1.786 -6.094 1.00 0.00 C ATOM 642 C LEU 40 2.291 -3.115 -6.310 1.00 0.00 C ATOM 643 O LEU 40 1.304 -3.416 -5.637 1.00 0.00 O ATOM 644 CB LEU 40 3.559 -1.723 -4.666 1.00 0.00 C ATOM 645 CG LEU 40 4.444 -2.902 -4.242 1.00 0.00 C ATOM 646 CD1 LEU 40 5.694 -2.937 -5.111 1.00 0.00 C ATOM 647 CD2 LEU 40 4.805 -2.764 -2.770 1.00 0.00 C ATOM 659 N CYS 41 2.794 -3.906 -7.251 1.00 0.00 N ATOM 660 CA CYS 41 2.221 -5.215 -7.539 1.00 0.00 C ATOM 661 C CYS 41 3.255 -6.319 -7.368 1.00 0.00 C ATOM 662 O CYS 41 3.072 -7.196 -6.568 1.00 0.00 O ATOM 664 CB CYS 41 1.667 -5.259 -8.963 1.00 0.00 C ATOM 665 SG CYS 41 0.325 -4.086 -9.270 1.00 0.00 S TER END