####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS457_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS457_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 1 - 39 4.88 5.53 LCS_AVERAGE: 93.34 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 33 1 - 33 1.94 6.46 LCS_AVERAGE: 70.43 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 2 - 20 0.91 6.25 LCS_AVERAGE: 37.42 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 33 39 3 3 4 4 9 15 25 27 28 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT Q 2 Q 2 19 33 39 13 16 20 25 29 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT E 3 E 3 19 33 39 9 16 20 25 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT T 4 T 4 19 33 39 13 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT R 5 R 5 19 33 39 13 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT K 6 K 6 19 33 39 13 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT K 7 K 7 19 33 39 13 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT C 8 C 8 19 33 39 13 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT T 9 T 9 19 33 39 13 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT E 10 E 10 19 33 39 13 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT M 11 M 11 19 33 39 13 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT K 12 K 12 19 33 39 13 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT K 13 K 13 19 33 39 13 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT K 14 K 14 19 33 39 13 16 21 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT F 15 F 15 19 33 39 13 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT K 16 K 16 19 33 39 3 9 18 22 26 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT N 17 N 17 19 33 39 9 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT C 18 C 18 19 33 39 9 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT E 19 E 19 19 33 39 9 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT V 20 V 20 19 33 39 7 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT R 21 R 21 17 33 39 7 14 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT C 22 C 22 17 33 39 3 14 21 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT D 23 D 23 17 33 39 4 10 19 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT E 24 E 24 17 33 39 4 14 21 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT S 25 S 25 17 33 39 6 14 21 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 38 LCS_GDT N 26 N 26 17 33 39 6 14 21 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 38 LCS_GDT H 27 H 27 17 33 39 6 14 21 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT C 28 C 28 17 33 39 9 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT V 29 V 29 17 33 39 9 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT E 30 E 30 17 33 39 9 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT V 31 V 31 17 33 39 10 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT R 32 R 32 17 33 39 8 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT C 33 C 33 17 33 39 7 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT S 34 S 34 4 32 39 3 4 9 15 22 28 30 31 33 33 34 34 34 35 35 35 35 36 37 39 LCS_GDT D 35 D 35 4 9 39 3 4 4 5 8 11 13 22 26 30 32 33 34 35 35 35 35 36 37 39 LCS_GDT T 36 T 36 6 9 39 6 6 6 7 8 11 13 14 15 17 19 22 24 27 32 33 35 36 37 39 LCS_GDT K 37 K 37 6 9 39 6 6 6 7 8 9 12 14 15 17 19 22 24 24 27 27 33 34 37 39 LCS_GDT Y 38 Y 38 6 9 39 6 6 6 7 8 11 13 14 15 17 19 22 24 24 25 26 29 30 31 39 LCS_GDT T 39 T 39 6 9 39 6 6 6 7 8 11 13 14 15 17 19 22 24 24 25 31 33 35 37 39 LCS_GDT L 40 L 40 6 9 24 6 6 6 7 8 11 13 14 15 17 19 22 24 24 25 26 33 34 37 39 LCS_GDT C 41 C 41 6 9 24 6 6 6 7 8 11 13 14 15 17 19 22 26 26 26 30 33 34 37 39 LCS_AVERAGE LCS_A: 67.06 ( 37.42 70.43 93.34 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 13 16 22 26 30 32 32 32 33 33 34 34 34 35 35 35 35 36 37 39 GDT PERCENT_AT 31.71 39.02 53.66 63.41 73.17 78.05 78.05 78.05 80.49 80.49 82.93 82.93 82.93 85.37 85.37 85.37 85.37 87.80 90.24 95.12 GDT RMS_LOCAL 0.27 0.43 0.96 1.27 1.51 1.69 1.69 1.69 2.01 1.94 2.25 2.25 2.25 3.00 3.00 3.00 3.00 3.67 4.14 5.44 GDT RMS_ALL_AT 6.61 6.61 6.23 6.39 6.36 6.43 6.43 6.43 6.23 6.46 6.24 6.24 6.24 5.93 5.93 5.93 5.93 5.75 5.65 5.56 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 6.091 0 0.108 0.656 8.522 0.000 0.000 6.771 LGA Q 2 Q 2 3.029 0 0.224 1.189 3.668 26.364 26.061 3.291 LGA E 3 E 3 2.290 0 0.048 1.545 6.485 38.636 21.010 5.066 LGA T 4 T 4 1.783 0 0.079 1.124 3.391 51.364 50.909 3.391 LGA R 5 R 5 1.733 0 0.039 0.723 5.370 58.182 25.289 5.370 LGA K 6 K 6 1.175 0 0.033 1.186 5.830 73.636 42.222 5.830 LGA K 7 K 7 0.742 0 0.037 0.661 3.113 81.818 56.566 3.113 LGA C 8 C 8 0.802 0 0.055 0.750 1.892 81.818 73.939 1.892 LGA T 9 T 9 1.087 0 0.016 0.109 1.835 73.636 65.974 1.771 LGA E 10 E 10 0.726 0 0.046 0.990 4.295 81.818 54.343 4.126 LGA M 11 M 11 0.331 0 0.071 0.968 4.630 90.909 74.318 4.630 LGA K 12 K 12 0.987 0 0.050 0.780 5.053 70.000 40.404 5.053 LGA K 13 K 13 1.892 0 0.022 0.608 2.938 48.182 45.657 2.938 LGA K 14 K 14 2.025 0 0.027 0.617 4.365 44.545 38.788 4.365 LGA F 15 F 15 1.469 0 0.201 0.369 3.477 58.182 50.413 2.960 LGA K 16 K 16 3.222 0 0.668 1.350 7.837 19.545 10.303 7.837 LGA N 17 N 17 0.937 0 0.345 0.542 2.601 90.909 66.364 2.601 LGA C 18 C 18 1.561 0 0.011 0.039 1.603 54.545 58.182 1.427 LGA E 19 E 19 1.858 0 0.195 0.474 3.797 58.182 40.606 2.867 LGA V 20 V 20 1.437 0 0.069 0.085 1.737 58.182 57.143 1.354 LGA R 21 R 21 1.248 0 0.016 1.075 5.610 69.545 36.033 5.610 LGA C 22 C 22 1.937 0 0.063 0.892 5.900 50.909 38.485 5.900 LGA D 23 D 23 2.600 0 0.302 1.145 4.545 22.273 20.682 3.190 LGA E 24 E 24 2.119 0 0.154 0.678 2.268 38.182 43.838 1.886 LGA S 25 S 25 2.510 0 0.091 0.668 4.537 32.727 26.667 4.537 LGA N 26 N 26 1.926 0 0.147 1.173 5.913 47.727 33.864 5.913 LGA H 27 H 27 1.555 0 0.095 0.323 4.089 58.182 36.364 4.089 LGA C 28 C 28 0.824 0 0.193 0.760 2.224 77.727 69.091 2.224 LGA V 29 V 29 0.430 0 0.071 0.093 0.728 100.000 92.208 0.728 LGA E 30 E 30 0.562 0 0.043 0.617 3.007 81.818 56.566 2.506 LGA V 31 V 31 0.847 0 0.044 1.150 2.838 81.818 69.610 1.782 LGA R 32 R 32 1.080 0 0.263 1.132 5.129 61.818 44.463 5.129 LGA C 33 C 33 2.044 0 0.505 0.570 3.206 33.636 30.000 3.033 LGA S 34 S 34 6.989 0 0.422 0.640 9.624 0.000 0.000 8.216 LGA D 35 D 35 13.658 0 0.064 1.044 16.951 0.000 0.000 14.834 LGA T 36 T 36 15.724 0 0.145 1.107 18.345 0.000 0.000 18.345 LGA K 37 K 37 15.074 0 0.051 1.445 22.226 0.000 0.000 22.226 LGA Y 38 Y 38 15.870 0 0.043 1.206 17.886 0.000 0.000 17.886 LGA T 39 T 39 13.898 0 0.165 1.066 17.314 0.000 0.000 15.930 LGA L 40 L 40 14.551 0 0.045 0.980 17.525 0.000 0.000 17.525 LGA C 41 C 41 14.193 0 0.107 0.795 17.031 0.000 0.000 13.522 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 5.480 5.573 6.220 46.752 36.497 17.118 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 32 1.69 66.463 71.353 1.789 LGA_LOCAL RMSD: 1.689 Number of atoms: 32 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 6.432 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 5.480 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.554563 * X + 0.557605 * Y + -0.617686 * Z + -4.959775 Y_new = -0.794095 * X + 0.576498 * Y + -0.192520 * Z + -10.139081 Z_new = 0.248745 * X + 0.597266 * Y + 0.762496 * Z + 1.577173 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.961173 -0.251384 0.664477 [DEG: -55.0712 -14.4032 38.0717 ] ZXZ: -1.268659 0.703635 0.394625 [DEG: -72.6888 40.3153 22.6104 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS457_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS457_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 32 1.69 71.353 5.48 REMARK ---------------------------------------------------------- MOLECULE T0955TS457_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 1 N SER 1 -4.960 -10.139 1.577 1.00 0.00 N ATOM 2 CA SER 1 -4.151 -11.297 1.940 1.00 0.00 C ATOM 3 C SER 1 -3.054 -10.916 2.925 1.00 0.00 C ATOM 4 O SER 1 -2.691 -9.745 3.042 1.00 0.00 O ATOM 5 CB SER 1 -3.537 -11.914 0.699 1.00 0.00 C ATOM 6 OG SER 1 -2.543 -11.083 0.165 1.00 0.00 O ATOM 14 N GLN 2 -2.528 -11.910 3.632 1.00 0.00 N ATOM 15 CA GLN 2 -1.477 -11.680 4.615 1.00 0.00 C ATOM 16 C GLN 2 -0.222 -11.118 3.959 1.00 0.00 C ATOM 17 O GLN 2 0.457 -10.263 4.527 1.00 0.00 O ATOM 18 CB GLN 2 -1.142 -12.977 5.357 1.00 0.00 C ATOM 19 CG GLN 2 -2.237 -13.458 6.295 1.00 0.00 C ATOM 20 CD GLN 2 -1.891 -14.777 6.958 1.00 0.00 C ATOM 21 OE1 GLN 2 -1.121 -15.577 6.418 1.00 0.00 O ATOM 22 NE2 GLN 2 -2.459 -15.013 8.135 1.00 0.00 N ATOM 31 N GLU 3 0.080 -11.604 2.759 1.00 0.00 N ATOM 32 CA GLU 3 1.253 -11.149 2.022 1.00 0.00 C ATOM 33 C GLU 3 1.117 -9.686 1.621 1.00 0.00 C ATOM 34 O GLU 3 2.081 -8.921 1.689 1.00 0.00 O ATOM 35 CB GLU 3 1.468 -12.012 0.777 1.00 0.00 C ATOM 36 CG GLU 3 1.952 -13.425 1.068 1.00 0.00 C ATOM 37 CD GLU 3 3.329 -13.460 1.672 1.00 0.00 C ATOM 38 OE1 GLU 3 4.226 -12.895 1.092 1.00 0.00 O ATOM 39 OE2 GLU 3 3.484 -14.050 2.715 1.00 0.00 O ATOM 46 N THR 4 -0.083 -9.301 1.200 1.00 0.00 N ATOM 47 CA THR 4 -0.357 -7.919 0.826 1.00 0.00 C ATOM 48 C THR 4 -0.408 -7.017 2.052 1.00 0.00 C ATOM 49 O THR 4 -0.083 -5.831 1.976 1.00 0.00 O ATOM 50 CB THR 4 -1.681 -7.807 0.047 1.00 0.00 C ATOM 51 OG1 THR 4 -2.726 -8.456 0.782 1.00 0.00 O ATOM 52 CG2 THR 4 -1.551 -8.457 -1.322 1.00 0.00 C ATOM 60 N ARG 5 -0.817 -7.583 3.181 1.00 0.00 N ATOM 61 CA ARG 5 -0.838 -6.852 4.443 1.00 0.00 C ATOM 62 C ARG 5 0.567 -6.435 4.861 1.00 0.00 C ATOM 63 O ARG 5 0.785 -5.305 5.299 1.00 0.00 O ATOM 64 CB ARG 5 -1.461 -7.698 5.543 1.00 0.00 C ATOM 65 CG ARG 5 -1.698 -6.968 6.855 1.00 0.00 C ATOM 66 CD ARG 5 -2.499 -7.785 7.802 1.00 0.00 C ATOM 67 NE ARG 5 -3.884 -7.907 7.376 1.00 0.00 N ATOM 68 CZ ARG 5 -4.700 -8.926 7.710 1.00 0.00 C ATOM 69 NH1 ARG 5 -4.257 -9.900 8.472 1.00 0.00 N ATOM 70 NH2 ARG 5 -5.946 -8.945 7.271 1.00 0.00 N ATOM 84 N LYS 6 1.516 -7.354 4.724 1.00 0.00 N ATOM 85 CA LYS 6 2.921 -7.048 4.975 1.00 0.00 C ATOM 86 C LYS 6 3.425 -5.965 4.031 1.00 0.00 C ATOM 87 O LYS 6 4.164 -5.068 4.437 1.00 0.00 O ATOM 88 CB LYS 6 3.776 -8.308 4.835 1.00 0.00 C ATOM 89 CG LYS 6 3.608 -9.311 5.971 1.00 0.00 C ATOM 90 CD LYS 6 4.580 -10.474 5.828 1.00 0.00 C ATOM 91 CE LYS 6 4.127 -11.443 4.745 1.00 0.00 C ATOM 92 NZ LYS 6 4.960 -12.676 4.719 1.00 0.00 N ATOM 106 N LYS 7 3.024 -6.055 2.767 1.00 0.00 N ATOM 107 CA LYS 7 3.379 -5.045 1.777 1.00 0.00 C ATOM 108 C LYS 7 2.781 -3.690 2.134 1.00 0.00 C ATOM 109 O LYS 7 3.433 -2.655 1.986 1.00 0.00 O ATOM 110 CB LYS 7 2.915 -5.473 0.384 1.00 0.00 C ATOM 111 CG LYS 7 3.706 -6.629 -0.215 1.00 0.00 C ATOM 112 CD LYS 7 3.172 -7.013 -1.587 1.00 0.00 C ATOM 113 CE LYS 7 3.950 -8.179 -2.178 1.00 0.00 C ATOM 114 NZ LYS 7 3.425 -8.578 -3.512 1.00 0.00 N ATOM 128 N CYS 8 1.539 -3.702 2.604 1.00 0.00 N ATOM 129 CA CYS 8 0.852 -2.473 2.984 1.00 0.00 C ATOM 130 C CYS 8 1.593 -1.751 4.102 1.00 0.00 C ATOM 131 O CYS 8 1.687 -0.523 4.106 1.00 0.00 O ATOM 132 CB CYS 8 -0.577 -2.774 3.438 1.00 0.00 C ATOM 133 SG CYS 8 -1.685 -3.280 2.101 1.00 0.00 S ATOM 139 N THR 9 2.117 -2.520 5.050 1.00 0.00 N ATOM 140 CA THR 9 2.915 -1.960 6.135 1.00 0.00 C ATOM 141 C THR 9 4.157 -1.259 5.602 1.00 0.00 C ATOM 142 O THR 9 4.477 -0.144 6.015 1.00 0.00 O ATOM 143 CB THR 9 3.329 -3.053 7.139 1.00 0.00 C ATOM 144 OG1 THR 9 2.159 -3.621 7.742 1.00 0.00 O ATOM 145 CG2 THR 9 4.221 -2.470 8.223 1.00 0.00 C ATOM 153 N GLU 10 4.853 -1.917 4.682 1.00 0.00 N ATOM 154 CA GLU 10 6.063 -1.358 4.091 1.00 0.00 C ATOM 155 C GLU 10 5.745 -0.140 3.233 1.00 0.00 C ATOM 156 O GLU 10 6.523 0.813 3.179 1.00 0.00 O ATOM 157 CB GLU 10 6.782 -2.414 3.248 1.00 0.00 C ATOM 158 CG GLU 10 7.380 -3.559 4.053 1.00 0.00 C ATOM 159 CD GLU 10 8.388 -3.097 5.070 1.00 0.00 C ATOM 160 OE1 GLU 10 9.310 -2.413 4.695 1.00 0.00 O ATOM 161 OE2 GLU 10 8.234 -3.429 6.222 1.00 0.00 O ATOM 168 N MET 11 4.598 -0.177 2.564 1.00 0.00 N ATOM 169 CA MET 11 4.119 0.970 1.801 1.00 0.00 C ATOM 170 C MET 11 3.912 2.182 2.699 1.00 0.00 C ATOM 171 O MET 11 4.267 3.304 2.336 1.00 0.00 O ATOM 172 CB MET 11 2.822 0.615 1.076 1.00 0.00 C ATOM 173 CG MET 11 3.001 -0.304 -0.123 1.00 0.00 C ATOM 174 SD MET 11 3.831 0.507 -1.504 1.00 0.00 S ATOM 175 CE MET 11 2.567 1.659 -2.030 1.00 0.00 C ATOM 185 N LYS 12 3.337 1.951 3.874 1.00 0.00 N ATOM 186 CA LYS 12 3.169 3.006 4.866 1.00 0.00 C ATOM 187 C LYS 12 4.505 3.652 5.214 1.00 0.00 C ATOM 188 O LYS 12 4.600 4.873 5.341 1.00 0.00 O ATOM 189 CB LYS 12 2.508 2.452 6.129 1.00 0.00 C ATOM 190 CG LYS 12 2.293 3.484 7.229 1.00 0.00 C ATOM 191 CD LYS 12 1.681 2.849 8.469 1.00 0.00 C ATOM 192 CE LYS 12 2.654 1.891 9.139 1.00 0.00 C ATOM 193 NZ LYS 12 2.107 1.339 10.409 1.00 0.00 N ATOM 207 N LYS 13 5.534 2.825 5.366 1.00 0.00 N ATOM 208 CA LYS 13 6.870 3.317 5.682 1.00 0.00 C ATOM 209 C LYS 13 7.427 4.167 4.547 1.00 0.00 C ATOM 210 O LYS 13 8.022 5.218 4.781 1.00 0.00 O ATOM 211 CB LYS 13 7.815 2.149 5.975 1.00 0.00 C ATOM 212 CG LYS 13 7.496 1.390 7.256 1.00 0.00 C ATOM 213 CD LYS 13 8.415 0.190 7.431 1.00 0.00 C ATOM 214 CE LYS 13 7.997 -0.660 8.621 1.00 0.00 C ATOM 215 NZ LYS 13 8.772 -1.928 8.698 1.00 0.00 N ATOM 229 N LYS 14 7.229 3.707 3.316 1.00 0.00 N ATOM 230 CA LYS 14 7.776 4.384 2.147 1.00 0.00 C ATOM 231 C LYS 14 7.022 5.675 1.856 1.00 0.00 C ATOM 232 O LYS 14 7.621 6.683 1.478 1.00 0.00 O ATOM 233 CB LYS 14 7.733 3.464 0.927 1.00 0.00 C ATOM 234 CG LYS 14 8.701 2.291 0.987 1.00 0.00 C ATOM 235 CD LYS 14 8.564 1.395 -0.234 1.00 0.00 C ATOM 236 CE LYS 14 9.514 0.210 -0.162 1.00 0.00 C ATOM 237 NZ LYS 14 9.369 -0.693 -1.338 1.00 0.00 N ATOM 251 N PHE 15 5.707 5.640 2.035 1.00 0.00 N ATOM 252 CA PHE 15 4.856 6.774 1.694 1.00 0.00 C ATOM 253 C PHE 15 4.255 7.408 2.942 1.00 0.00 C ATOM 254 O PHE 15 3.201 6.985 3.418 1.00 0.00 O ATOM 255 CB PHE 15 3.737 6.338 0.748 1.00 0.00 C ATOM 256 CG PHE 15 4.226 5.851 -0.586 1.00 0.00 C ATOM 257 CD1 PHE 15 4.615 4.532 -0.760 1.00 0.00 C ATOM 258 CD2 PHE 15 4.299 6.713 -1.671 1.00 0.00 C ATOM 259 CE1 PHE 15 5.066 4.084 -1.987 1.00 0.00 C ATOM 260 CE2 PHE 15 4.748 6.267 -2.899 1.00 0.00 C ATOM 261 CZ PHE 15 5.132 4.951 -3.057 1.00 0.00 C ATOM 271 N LYS 16 4.931 8.422 3.470 1.00 0.00 N ATOM 272 CA LYS 16 4.553 9.012 4.748 1.00 0.00 C ATOM 273 C LYS 16 3.234 9.766 4.637 1.00 0.00 C ATOM 274 O LYS 16 2.953 10.401 3.621 1.00 0.00 O ATOM 275 CB LYS 16 5.653 9.949 5.251 1.00 0.00 C ATOM 276 CG LYS 16 6.953 9.249 5.626 1.00 0.00 C ATOM 277 CD LYS 16 7.991 10.244 6.123 1.00 0.00 C ATOM 278 CE LYS 16 9.301 9.550 6.468 1.00 0.00 C ATOM 279 NZ LYS 16 10.339 10.515 6.924 1.00 0.00 N ATOM 293 N ASN 17 2.425 9.691 5.689 1.00 0.00 N ATOM 294 CA ASN 17 1.160 10.414 5.736 1.00 0.00 C ATOM 295 C ASN 17 0.301 10.100 4.518 1.00 0.00 C ATOM 296 O ASN 17 -0.316 10.992 3.936 1.00 0.00 O ATOM 297 CB ASN 17 1.401 11.908 5.850 1.00 0.00 C ATOM 298 CG ASN 17 2.095 12.285 7.128 1.00 0.00 C ATOM 299 OD1 ASN 17 1.748 11.791 8.207 1.00 0.00 O ATOM 300 ND2 ASN 17 3.070 13.153 7.030 1.00 0.00 N ATOM 307 N CYS 18 0.266 8.828 4.136 1.00 0.00 N ATOM 308 CA CYS 18 -0.545 8.389 3.008 1.00 0.00 C ATOM 309 C CYS 18 -1.471 7.246 3.406 1.00 0.00 C ATOM 310 O CYS 18 -1.196 6.515 4.358 1.00 0.00 O ATOM 311 CB CYS 18 0.344 7.937 1.849 1.00 0.00 C ATOM 312 SG CYS 18 1.401 9.242 1.176 1.00 0.00 S ATOM 318 N GLU 19 -2.568 7.098 2.673 1.00 0.00 N ATOM 319 CA GLU 19 -3.475 5.972 2.868 1.00 0.00 C ATOM 320 C GLU 19 -3.122 4.814 1.943 1.00 0.00 C ATOM 321 O GLU 19 -3.008 4.990 0.730 1.00 0.00 O ATOM 322 CB GLU 19 -4.923 6.405 2.631 1.00 0.00 C ATOM 323 CG GLU 19 -5.953 5.308 2.860 1.00 0.00 C ATOM 324 CD GLU 19 -7.357 5.751 2.556 1.00 0.00 C ATOM 325 OE1 GLU 19 -7.527 6.862 2.117 1.00 0.00 O ATOM 326 OE2 GLU 19 -8.261 4.975 2.763 1.00 0.00 O ATOM 333 N VAL 20 -2.951 3.632 2.523 1.00 0.00 N ATOM 334 CA VAL 20 -2.582 2.448 1.754 1.00 0.00 C ATOM 335 C VAL 20 -3.702 1.415 1.763 1.00 0.00 C ATOM 336 O VAL 20 -4.222 1.058 2.820 1.00 0.00 O ATOM 337 CB VAL 20 -1.300 1.816 2.328 1.00 0.00 C ATOM 338 CG1 VAL 20 -0.922 0.569 1.542 1.00 0.00 C ATOM 339 CG2 VAL 20 -0.168 2.831 2.306 1.00 0.00 C ATOM 349 N ARG 21 -4.069 0.938 0.578 1.00 0.00 N ATOM 350 CA ARG 21 -5.175 -0.001 0.440 1.00 0.00 C ATOM 351 C ARG 21 -4.758 -1.231 -0.355 1.00 0.00 C ATOM 352 O ARG 21 -4.156 -1.117 -1.423 1.00 0.00 O ATOM 353 CB ARG 21 -6.360 0.663 -0.246 1.00 0.00 C ATOM 354 CG ARG 21 -7.024 1.772 0.556 1.00 0.00 C ATOM 355 CD ARG 21 -8.314 2.190 -0.049 1.00 0.00 C ATOM 356 NE ARG 21 -8.983 3.204 0.749 1.00 0.00 N ATOM 357 CZ ARG 21 -10.251 3.618 0.553 1.00 0.00 C ATOM 358 NH1 ARG 21 -10.970 3.098 -0.416 1.00 0.00 N ATOM 359 NH2 ARG 21 -10.770 4.549 1.335 1.00 0.00 N ATOM 373 N CYS 22 -5.079 -2.407 0.173 1.00 0.00 N ATOM 374 CA CYS 22 -4.847 -3.657 -0.542 1.00 0.00 C ATOM 375 C CYS 22 -5.853 -3.841 -1.670 1.00 0.00 C ATOM 376 O CYS 22 -7.051 -3.622 -1.488 1.00 0.00 O ATOM 377 CB CYS 22 -4.934 -4.848 0.412 1.00 0.00 C ATOM 378 SG CYS 22 -4.741 -6.456 -0.392 1.00 0.00 S ATOM 384 N ASP 23 -5.361 -4.246 -2.836 1.00 0.00 N ATOM 385 CA ASP 23 -6.229 -4.627 -3.944 1.00 0.00 C ATOM 386 C ASP 23 -6.095 -6.111 -4.264 1.00 0.00 C ATOM 387 O ASP 23 -5.113 -6.538 -4.872 1.00 0.00 O ATOM 388 CB ASP 23 -5.905 -3.799 -5.189 1.00 0.00 C ATOM 389 CG ASP 23 -6.745 -4.192 -6.397 1.00 0.00 C ATOM 390 OD1 ASP 23 -7.286 -5.273 -6.394 1.00 0.00 O ATOM 391 OD2 ASP 23 -6.839 -3.408 -7.310 1.00 0.00 O ATOM 396 N GLU 24 -7.086 -6.892 -3.850 1.00 0.00 N ATOM 397 CA GLU 24 -7.002 -8.345 -3.935 1.00 0.00 C ATOM 398 C GLU 24 -7.486 -8.847 -5.289 1.00 0.00 C ATOM 399 O GLU 24 -7.518 -10.052 -5.542 1.00 0.00 O ATOM 400 CB GLU 24 -7.821 -8.993 -2.818 1.00 0.00 C ATOM 401 CG GLU 24 -7.260 -8.777 -1.419 1.00 0.00 C ATOM 402 CD GLU 24 -8.017 -9.531 -0.362 1.00 0.00 C ATOM 403 OE1 GLU 24 -9.225 -9.490 -0.379 1.00 0.00 O ATOM 404 OE2 GLU 24 -7.387 -10.148 0.465 1.00 0.00 O ATOM 411 N SER 25 -7.864 -7.915 -6.159 1.00 0.00 N ATOM 412 CA SER 25 -8.347 -8.261 -7.490 1.00 0.00 C ATOM 413 C SER 25 -7.270 -8.036 -8.542 1.00 0.00 C ATOM 414 O SER 25 -7.257 -8.694 -9.584 1.00 0.00 O ATOM 415 CB SER 25 -9.577 -7.441 -7.829 1.00 0.00 C ATOM 416 OG SER 25 -9.258 -6.081 -7.941 1.00 0.00 O ATOM 422 N ASN 26 -6.366 -7.102 -8.267 1.00 0.00 N ATOM 423 CA ASN 26 -5.214 -6.872 -9.130 1.00 0.00 C ATOM 424 C ASN 26 -3.921 -7.304 -8.451 1.00 0.00 C ATOM 425 O ASN 26 -2.828 -7.035 -8.948 1.00 0.00 O ATOM 426 CB ASN 26 -5.139 -5.413 -9.543 1.00 0.00 C ATOM 427 CG ASN 26 -6.236 -5.024 -10.494 1.00 0.00 C ATOM 428 OD1 ASN 26 -6.201 -5.377 -11.679 1.00 0.00 O ATOM 429 ND2 ASN 26 -7.211 -4.304 -10.001 1.00 0.00 N ATOM 436 N HIS 27 -4.053 -7.975 -7.312 1.00 0.00 N ATOM 437 CA HIS 27 -2.904 -8.556 -6.628 1.00 0.00 C ATOM 438 C HIS 27 -1.817 -7.515 -6.395 1.00 0.00 C ATOM 439 O HIS 27 -0.645 -7.748 -6.694 1.00 0.00 O ATOM 440 CB HIS 27 -2.332 -9.728 -7.432 1.00 0.00 C ATOM 441 CG HIS 27 -3.336 -10.797 -7.734 1.00 0.00 C ATOM 442 ND1 HIS 27 -3.854 -11.628 -6.762 1.00 0.00 N ATOM 443 CD2 HIS 27 -3.916 -11.173 -8.898 1.00 0.00 C ATOM 444 CE1 HIS 27 -4.711 -12.468 -7.316 1.00 0.00 C ATOM 445 NE2 HIS 27 -4.767 -12.212 -8.610 1.00 0.00 N ATOM 453 N CYS 28 -2.211 -6.365 -5.859 1.00 0.00 N ATOM 454 CA CYS 28 -1.285 -5.258 -5.654 1.00 0.00 C ATOM 455 C CYS 28 -1.743 -4.362 -4.509 1.00 0.00 C ATOM 456 O CYS 28 -2.813 -4.567 -3.938 1.00 0.00 O ATOM 457 CB CYS 28 -1.155 -4.422 -6.927 1.00 0.00 C ATOM 458 SG CYS 28 -2.682 -3.591 -7.424 1.00 0.00 S ATOM 464 N VAL 29 -0.924 -3.369 -4.179 1.00 0.00 N ATOM 465 CA VAL 29 -1.270 -2.404 -3.142 1.00 0.00 C ATOM 466 C VAL 29 -1.196 -0.977 -3.671 1.00 0.00 C ATOM 467 O VAL 29 -0.213 -0.589 -4.302 1.00 0.00 O ATOM 468 CB VAL 29 -0.322 -2.552 -1.937 1.00 0.00 C ATOM 469 CG1 VAL 29 -0.647 -1.513 -0.873 1.00 0.00 C ATOM 470 CG2 VAL 29 -0.425 -3.958 -1.367 1.00 0.00 C ATOM 480 N GLU 30 -2.242 -0.201 -3.409 1.00 0.00 N ATOM 481 CA GLU 30 -2.306 1.181 -3.874 1.00 0.00 C ATOM 482 C GLU 30 -2.089 2.158 -2.726 1.00 0.00 C ATOM 483 O GLU 30 -2.326 1.829 -1.564 1.00 0.00 O ATOM 484 CB GLU 30 -3.654 1.456 -4.542 1.00 0.00 C ATOM 485 CG GLU 30 -3.883 0.686 -5.835 1.00 0.00 C ATOM 486 CD GLU 30 -5.188 1.031 -6.498 1.00 0.00 C ATOM 487 OE1 GLU 30 -5.948 1.771 -5.922 1.00 0.00 O ATOM 488 OE2 GLU 30 -5.424 0.554 -7.584 1.00 0.00 O ATOM 495 N VAL 31 -1.634 3.362 -3.058 1.00 0.00 N ATOM 496 CA VAL 31 -1.382 4.390 -2.056 1.00 0.00 C ATOM 497 C VAL 31 -1.781 5.768 -2.568 1.00 0.00 C ATOM 498 O VAL 31 -1.566 6.092 -3.737 1.00 0.00 O ATOM 499 CB VAL 31 0.107 4.401 -1.665 1.00 0.00 C ATOM 500 CG1 VAL 31 0.977 4.664 -2.886 1.00 0.00 C ATOM 501 CG2 VAL 31 0.353 5.450 -0.592 1.00 0.00 C ATOM 511 N ARG 32 -2.361 6.576 -1.688 1.00 0.00 N ATOM 512 CA ARG 32 -2.666 7.965 -2.008 1.00 0.00 C ATOM 513 C ARG 32 -2.384 8.878 -0.821 1.00 0.00 C ATOM 514 O ARG 32 -2.479 8.460 0.333 1.00 0.00 O ATOM 515 CB ARG 32 -4.122 8.113 -2.423 1.00 0.00 C ATOM 516 CG ARG 32 -5.133 7.821 -1.324 1.00 0.00 C ATOM 517 CD ARG 32 -6.528 7.994 -1.802 1.00 0.00 C ATOM 518 NE ARG 32 -7.497 7.773 -0.740 1.00 0.00 N ATOM 519 CZ ARG 32 -8.830 7.907 -0.880 1.00 0.00 C ATOM 520 NH1 ARG 32 -9.337 8.260 -2.040 1.00 0.00 N ATOM 521 NH2 ARG 32 -9.628 7.684 0.150 1.00 0.00 N ATOM 535 N CYS 33 -2.037 10.127 -1.112 1.00 0.00 N ATOM 536 CA CYS 33 -1.702 11.091 -0.070 1.00 0.00 C ATOM 537 C CYS 33 -2.907 11.388 0.814 1.00 0.00 C ATOM 538 O CYS 33 -4.034 11.493 0.329 1.00 0.00 O ATOM 539 CB CYS 33 -1.196 12.395 -0.686 1.00 0.00 C ATOM 540 SG CYS 33 0.381 12.235 -1.560 1.00 0.00 S ATOM 546 N SER 34 -2.663 11.522 2.114 1.00 0.00 N ATOM 547 CA SER 34 -3.721 11.846 3.062 1.00 0.00 C ATOM 548 C SER 34 -3.209 12.761 4.167 1.00 0.00 C ATOM 549 O SER 34 -2.132 13.346 4.052 1.00 0.00 O ATOM 550 CB SER 34 -4.287 10.576 3.667 1.00 0.00 C ATOM 551 OG SER 34 -5.453 10.844 4.396 1.00 0.00 O ATOM 557 N ASP 35 -3.988 12.883 5.237 1.00 0.00 N ATOM 558 CA ASP 35 -3.616 13.729 6.363 1.00 0.00 C ATOM 559 C ASP 35 -2.854 12.938 7.419 1.00 0.00 C ATOM 560 O ASP 35 -2.171 13.512 8.266 1.00 0.00 O ATOM 561 CB ASP 35 -4.859 14.365 6.991 1.00 0.00 C ATOM 562 CG ASP 35 -5.583 15.311 6.042 1.00 0.00 C ATOM 563 OD1 ASP 35 -4.922 16.040 5.342 1.00 0.00 O ATOM 564 OD2 ASP 35 -6.791 15.295 6.028 1.00 0.00 O ATOM 569 N THR 36 -2.977 11.616 7.363 1.00 0.00 N ATOM 570 CA THR 36 -2.375 10.747 8.368 1.00 0.00 C ATOM 571 C THR 36 -2.076 9.368 7.794 1.00 0.00 C ATOM 572 O THR 36 -2.685 8.948 6.811 1.00 0.00 O ATOM 573 CB THR 36 -3.287 10.608 9.600 1.00 0.00 C ATOM 574 OG1 THR 36 -2.602 9.878 10.625 1.00 0.00 O ATOM 575 CG2 THR 36 -4.570 9.876 9.234 1.00 0.00 C ATOM 583 N LYS 37 -1.131 8.668 8.413 1.00 0.00 N ATOM 584 CA LYS 37 -0.830 7.290 8.040 1.00 0.00 C ATOM 585 C LYS 37 -2.018 6.375 8.310 1.00 0.00 C ATOM 586 O LYS 37 -2.621 6.423 9.382 1.00 0.00 O ATOM 587 CB LYS 37 0.402 6.789 8.795 1.00 0.00 C ATOM 588 CG LYS 37 1.702 7.480 8.407 1.00 0.00 C ATOM 589 CD LYS 37 2.871 6.965 9.234 1.00 0.00 C ATOM 590 CE LYS 37 4.163 7.683 8.875 1.00 0.00 C ATOM 591 NZ LYS 37 5.292 7.266 9.750 1.00 0.00 N ATOM 605 N TYR 38 -2.350 5.542 7.329 1.00 0.00 N ATOM 606 CA TYR 38 -3.381 4.526 7.505 1.00 0.00 C ATOM 607 C TYR 38 -3.216 3.394 6.497 1.00 0.00 C ATOM 608 O TYR 38 -2.865 3.627 5.340 1.00 0.00 O ATOM 609 CB TYR 38 -4.773 5.150 7.379 1.00 0.00 C ATOM 610 CG TYR 38 -5.901 4.189 7.685 1.00 0.00 C ATOM 611 CD1 TYR 38 -6.270 3.950 9.000 1.00 0.00 C ATOM 612 CD2 TYR 38 -6.567 3.549 6.651 1.00 0.00 C ATOM 613 CE1 TYR 38 -7.300 3.074 9.281 1.00 0.00 C ATOM 614 CE2 TYR 38 -7.598 2.672 6.930 1.00 0.00 C ATOM 615 CZ TYR 38 -7.965 2.435 8.239 1.00 0.00 C ATOM 616 OH TYR 38 -8.991 1.561 8.518 1.00 0.00 O ATOM 626 N THR 39 -3.470 2.169 6.945 1.00 0.00 N ATOM 627 CA THR 39 -3.456 1.013 6.058 1.00 0.00 C ATOM 628 C THR 39 -4.788 0.275 6.092 1.00 0.00 C ATOM 629 O THR 39 -5.465 0.243 7.119 1.00 0.00 O ATOM 630 CB THR 39 -2.319 0.044 6.431 1.00 0.00 C ATOM 631 OG1 THR 39 -2.511 -0.431 7.770 1.00 0.00 O ATOM 632 CG2 THR 39 -0.970 0.740 6.331 1.00 0.00 C ATOM 640 N LEU 40 -5.160 -0.318 4.962 1.00 0.00 N ATOM 641 CA LEU 40 -6.362 -1.140 4.888 1.00 0.00 C ATOM 642 C LEU 40 -6.086 -2.453 4.167 1.00 0.00 C ATOM 643 O LEU 40 -5.686 -2.462 3.004 1.00 0.00 O ATOM 644 CB LEU 40 -7.481 -0.379 4.168 1.00 0.00 C ATOM 645 CG LEU 40 -8.796 -1.148 3.981 1.00 0.00 C ATOM 646 CD1 LEU 40 -9.398 -1.462 5.344 1.00 0.00 C ATOM 647 CD2 LEU 40 -9.753 -0.321 3.136 1.00 0.00 C ATOM 659 N CYS 41 -6.304 -3.563 4.866 1.00 0.00 N ATOM 660 CA CYS 41 -6.061 -4.885 4.300 1.00 0.00 C ATOM 661 C CYS 41 -6.672 -5.976 5.169 1.00 0.00 C ATOM 662 O CYS 41 -7.846 -6.214 5.096 1.00 0.00 O ATOM 663 OXT CYS 41 -5.979 -6.599 5.926 1.00 0.00 O ATOM 664 CB CYS 41 -4.561 -5.138 4.150 1.00 0.00 C ATOM 665 SG CYS 41 -4.155 -6.706 3.345 1.00 0.00 S TER END