| Target: L4000 |
| Target: |
L4000 |
| Type: |
All-group target
|
| Is protein multimer? |
Yes
|
| Is CAPRI target? |
No |
| Is ligand target? |
Yes
|
| Entry Date: |
2024-05-03 |
| Server Expiration Date: |
2024-07-20 |
| Human Expiration Date: |
2024-08-03 |
|
| Protein: |
MPro |
| Organism: |
|
| Residues: |
306 |
| Method: |
X-RAY
|
| Additional Information: |
The Mpro dataset, generously provided by Idorsia Pharmaceuticals Ltd (Allschwil, CH), contains in total 25 protein-ligand(s) complexes. The structure is a homodimer. ---
Tasks:
25 protein-ligand(s) complexes: ONLY Pose (P) prediction. ---
The stereochemistry is known and is provided for all the ligands, however the protonation might not be optimal and would need to be determined. Some protein-ligand(s) complexes have more than one ligand present in the active site (20 protein-ligand(s) complexes in total). Molecules located nearby (<4.5 A) the main ligand(s) and interacting with specific or non-specific interactions were also included in the SMILES files (.tsv).
---
Some ligands are covalently bound to a cysteine residue. The attachment points for each covalent inhibitor are as follows:
L4003, LIG, SMARTS: [cX3][nX2][cX3][nX2] (first atom);
L4013, LIG, SMARTS: [C](=[N])[c] (first atom);
L4019, LIG, SMARTS: [C](=[N])[c] (first atom);
L4023, LIG, SMARTS: [C](=[N])[c] (first atom).
---
In L4007, Cys145 is chemically modified to S-Hydroperoxycysteine (https://pubchem.ncbi.nlm.nih.gov/compound/S-Hydroperoxycysteine).
---
Reference: https://www.biorxiv.org/content/10.1101/2024.02.12.579977v1
---
Predicted protein-ligand complexes should be submitted in CASP LG format through a special ligand submission gateway: https://predictioncenter.org/casp16/predictions_submission_LG.cgi . |
Sequence: (Plain text version)
|
Template: (Plain text version)
|
Ligand SMILES:
(L4000.SMILES.tar.gz)
|
