

PFRMAT ABF1
TARGET T0021
AUTHOR 4926-8342-4702 D.J. Osguthorpe, University of Bath, djosg@mgu.bath.ac.uk
REMARK     t0021; KorB C-terminal domain from E.coli; 64 a.a.
REMARK Ab initio folding using simplified geometry model with specifically
REMARK parameterised flexible internals and other potentials.
REMARK Molecular dynamics with cooling used as search technique.
REMARK Methods currently working to around 100 atoms
REMARK Method development specifically excluded small proteins with
REMARK disulphide bridges because of foldability problems of such proteins.
REMARK All model atoms have been submitted - however only CA atoms and
REMARK some CB atoms and SG atoms will correspond directly to standard
REMARK PDB atoms - rest of atoms correspond to centres of coordinates of
REMARK groups of PDB atoms e.g. OG corresponds to centre of CG, OD1, OD2
REMARK for ASP.
REMARK Atoms corresponding directly to PDB atoms are labelled 1.0 in
REMARK occupancy field, 0.0 for those not corresponding directly to PDB atoms
REMARK Expected CA RMS from correct fold is 4-6 angstroms
REMARK (i.e. simulations of known structures fluctuate at this level from
REMARK       the X-ray structure)
REMARK I have observed mis-folds with similar CA RMS values - RMS does not
REMARK discriminate between folds at this level - need to use your eyes!!
BEGDAT 3.1    4  .10
REMARK   check of folding parameters                                        64.9
REMARK  DATE:                                                                   
ATOM      1  CA  GLYN    1      19.853 -17.966  55.589   .00  1.00
ATOM      2  CA  ALA     2      16.121 -18.264  55.125   .00  1.00
ATOM      3  CB  ALA     2      15.427 -16.953  55.061   .00  1.00
ATOM      4  CA  LYS     3      15.049 -21.183  52.917   .00  1.00
ATOM      5  CB  LYS     3      16.083 -22.276  52.591   .00  1.00
ATOM      6  CG  LYS     3      18.435 -22.569  51.656   .00   .00
ATOM      7  ND  LYS     3      20.418 -23.819  51.389   .00   .00
ATOM      8  CA  GLU     4      11.554 -22.710  52.914   .00  1.00
ATOM      9  CB  GLU     4      10.778 -22.797  54.568   .00   .00
ATOM     10  OG  GLU     4       9.042 -24.386  56.026   .00   .00
ATOM     11  CA  PRO     5       9.139 -21.764  50.095   .00  1.00
ATOM     12  CB  PRO     5       8.263 -22.778  49.658   .00   .00
ATOM     13  CA  ASP     6       7.515 -18.408  49.428   .00  1.00
ATOM     14  CB  ASP     6       8.045 -17.425  50.476   .00  1.00
ATOM     15  OG  ASP     6       7.213 -17.666  52.224   .00   .00
ATOM     16  CA  PRO     7       9.756 -17.830  46.441   .00  1.00
ATOM     17  CB  PRO     7      11.170 -17.850  46.644   .00   .00
ATOM     18  CA  ASP     8       8.538 -18.683  42.943   .00  1.00
ATOM     19  CB  ASP     8       7.697 -19.969  42.747   .00  1.00
ATOM     20  OG  ASP     8       8.170 -21.391  44.024   .00   .00
ATOM     21  CA  LYS     9       7.407 -16.203  40.339   .00  1.00
ATOM     22  CB  LYS     9       6.590 -14.933  40.685   .00  1.00
ATOM     23  CG  LYS     9       4.415 -14.149  41.908   .00   .00
ATOM     24  ND  LYS     9       2.613 -12.535  42.656   .00   .00
ATOM     25  CA  LEU    10       9.207 -15.217  37.123   .00  1.00
ATOM     26  CB  LEU    10      10.215 -15.993  36.333   .00  1.00
ATOM     27  CG  LEU    10      10.853 -15.127  34.741   .00   .00
ATOM     28  CA  LYS    11       7.469 -13.161  34.498   .00  1.00
ATOM     29  CB  LYS    11       6.658 -11.896  34.852   .00  1.00
ATOM     30  CG  LYS    11       4.237 -12.295  35.503   .00   .00
ATOM     31  ND  LYS    11       2.385 -12.531  37.190   .00   .00
ATOM     32  CA  LYS    12       9.268 -12.603  31.190   .00  1.00
ATOM     33  CB  LYS    12       9.404 -11.123  30.661   .00  1.00
ATOM     34  CG  LYS    12       8.606 -10.045  28.519   .00   .00
ATOM     35  ND  LYS    12       7.988  -8.213  26.867   .00   .00
ATOM     36  CA  ALA    13      11.937 -14.877  29.741   .00  1.00
ATOM     37  CB  ALA    13      11.502 -15.488  28.423   .00  1.00
ATOM     38  CA  ILE    14      15.852 -14.767  29.674   .00  1.00
ATOM     39  CB  ILE    14      16.685 -13.575  27.926   .00   .00
ATOM     40  CA  VAL    15      18.226 -15.082  32.648   .00  1.00
ATOM     41  CB  VAL    15      17.608 -14.779  34.430   .00   .00
ATOM     42  CA  GLN    16      21.092 -17.508  32.910   .00  1.00
ATOM     43  CB  GLN    16      22.190 -17.904  31.517   .00   .00
ATOM     44  CG  GLN    16      22.140 -18.289  28.956   .00   .00
ATOM     45  CA  VAL    17      23.450 -17.827  35.783   .00  1.00
ATOM     46  CB  VAL    17      23.148 -17.018  37.462   .00   .00
ATOM     47  CA  GLU    18      25.980 -20.421  36.909   .00  1.00
ATOM     48  CB  GLU    18      26.574 -21.767  35.777   .00   .00
ATOM     49  OG  GLU    18      25.764 -24.046  34.577   .00   .00
ATOM     50  CA  HIS    19      28.578 -19.673  39.557   .00  1.00
ATOM     51  CB  HIS    19      28.955 -18.245  39.973   .00  1.00
ATOM     52  CG  HIS    19      29.929 -16.822  37.909   .00   .00
ATOM     53  CA  ASP    20      31.207 -22.318  40.217   .00  1.00
ATOM     54  CB  ASP    20      31.902 -23.133  39.143   .00  1.00
ATOM     55  OG  ASP    20      30.681 -23.792  37.783   .00   .00
ATOM     56  CA  GLU    21      33.525 -22.066  43.213   .00  1.00
ATOM     57  CB  GLU    21      35.119 -21.319  43.031   .00   .00
ATOM     58  OG  GLU    21      37.499 -21.457  41.450   .00   .00
ATOM     59  CA  ARG    22      31.232 -19.634  45.043   .00  1.00
ATOM     60  CB  ARG    22      31.226 -18.142  44.520   .00  1.00
ATOM     61  CG  ARG    22      32.255 -15.836  45.125   .00   .00
ATOM     62  ND  ARG    22      32.330 -13.970  46.637   .00   .00
ATOM     63  CA  PRO    23      28.190 -21.523  43.873   .00  1.00
ATOM     64  CB  PRO    23      27.966 -22.868  44.360   .00   .00
ATOM     65  CA  ALA    24      25.111 -19.550  43.101   .00  1.00
ATOM     66  CB  ALA    24      25.098 -18.017  43.342   .00  1.00
ATOM     67  CA  ARG    25      23.037 -20.697  40.116   .00  1.00
ATOM     68  CB  ARG    25      22.917 -22.225  39.839   .00  1.00
ATOM     69  CG  ARG    25      24.665 -24.023  39.346   .00   .00
ATOM     70  ND  ARG    25      25.136 -25.819  40.616   .00   .00
ATOM     71  CA  LEU    26      19.865 -18.958  39.080   .00  1.00
ATOM     72  CB  LEU    26      19.570 -17.561  39.651   .00  1.00
ATOM     73  CG  LEU    26      19.724 -17.336  41.492   .00   .00
ATOM     74  CA  ILE    27      18.383 -19.535  35.637   .00  1.00
ATOM     75  CB  ILE    27      19.343 -21.256  34.578   .00   .00
ATOM     76  CA  LEU    28      14.918 -18.518  34.596   .00  1.00
ATOM     77  CB  LEU    28      14.392 -17.289  35.281   .00  1.00
ATOM     78  CG  LEU    28      14.590 -17.291  37.139   .00   .00
ATOM     79  CA  ASN    29      13.272 -18.882  31.218   .00  1.00
ATOM     80  CB  ASN    29      13.787 -19.748  30.079   .00  1.00
ATOM     81  CG  ASN    29      15.637 -19.335  29.467   .00   .00
ATOM     82  CA  ARG    30       9.489 -18.550  30.908   .00  1.00
ATOM     83  CB  ARG    30       8.665 -17.815  32.034   .00  1.00
ATOM     84  CG  ARG    30       6.507 -17.849  33.391   .00   .00
ATOM     85  ND  ARG    30       4.409 -17.023  34.046   .00   .00
ATOM     86  CA  ARG    31       8.080 -17.693  27.486   .00  1.00
ATOM     87  CB  ARG    31       7.834 -18.916  26.718   .00  1.00
ATOM     88  CG  ARG    31       8.503 -19.264  24.253   .00   .00
ATOM     89  ND  ARG    31       8.251 -18.741  21.914   .00   .00
ATOM     90  CA  PRO    32       5.564 -14.894  26.946   .00  1.00
ATOM     91  CB  PRO    32       5.885 -13.809  26.123   .00   .00
ATOM     92  CA  PRO    33       3.166 -17.267  25.239   .00  1.00
ATOM     93  CB  PRO    33       3.588 -17.886  24.023   .00   .00
ATOM     94  CA  ALA    34       3.210 -19.799  28.052   .00  1.00
ATOM     95  CB  ALA    34       1.883 -20.376  28.491   .00  1.00
ATOM     96  CA  GLU    35       5.815 -22.342  29.131   .00  1.00
ATOM     97  CB  GLU    35       7.242 -22.822  28.048   .00   .00
ATOM     98  OG  GLU    35       6.441 -23.902  25.851   .00   .00
ATOM     99  CA  GLY    36       7.074 -21.943  32.725   .00  1.00
ATOM    100  CA  TYR    37      10.635 -22.223  34.140   .00  1.00
ATOM    101  CB  TYR    37      11.850 -22.395  33.205   .00  1.00
ATOM    102  CG  TYR    37      11.625 -23.906  31.861   .00   .00
ATOM    103  CD  TYR    37      11.287 -25.693  30.225   .00   .00
ATOM    104  CA  ALA    38      11.896 -20.594  37.329   .00  1.00
ATOM    105  CB  ALA    38      10.836 -20.130  38.296   .00  1.00
ATOM    106  CA  TRP    39      15.197 -21.788  38.848   .00  1.00
ATOM    107  CB  TRP    39      16.246 -22.156  37.805   .00  1.00
ATOM    108  CG  TRP    39      15.617 -24.419  36.383   .00   .00
ATOM    109  CD  TRP    39      16.294 -26.101  37.450   .00   .00
ATOM    110  CA  LEU    40      16.450 -20.156  42.127   .00  1.00
ATOM    111  CB  LEU    40      15.462 -19.556  43.116   .00  1.00
ATOM    112  CG  LEU    40      16.176 -18.580  44.584   .00   .00
ATOM    113  CA  LYS    41      19.640 -21.089  43.972   .00  1.00
ATOM    114  CB  LYS    41      20.401 -22.281  43.291   .00  1.00
ATOM    115  CG  LYS    41      19.751 -24.767  42.679   .00   .00
ATOM    116  ND  LYS    41      19.760 -27.140  43.305   .00   .00
ATOM    117  CA  TYR    42      21.919 -18.929  46.136   .00  1.00
ATOM    118  CB  TYR    42      21.416 -17.551  46.452   .00  1.00
ATOM    119  CG  TYR    42      19.790 -17.487  47.586   .00   .00
ATOM    120  CD  TYR    42      17.814 -17.436  49.034   .00   .00
ATOM    121  CA  GLU    43      24.555 -19.993  48.657   .00  1.00
ATOM    122  CB  GLU    43      25.515 -21.577  48.360   .00   .00
ATOM    123  OG  GLU    43      25.335 -24.253  47.981   .00   .00
ATOM    124  CA  ASP    44      26.661 -17.188  50.215   .00  1.00
ATOM    125  CB  ASP    44      27.911 -16.678  49.452   .00  1.00
ATOM    126  OG  ASP    44      29.514 -17.843  49.632   .00   .00
ATOM    127  CA  ASP    45      23.530 -15.066  50.170   .00  1.00
ATOM    128  CB  ASP    45      23.243 -14.317  51.465   .00  1.00
ATOM    129  OG  ASP    45      23.235 -15.535  53.013   .00   .00
ATOM    130  CA  GLY    46      24.799 -12.526  47.664   .00  1.00
ATOM    131  CA  GLN    47      23.211  -9.074  47.132   .00  1.00
ATOM    132  CB  GLN    47      23.882  -7.594  47.937   .00   .00
ATOM    133  CG  GLN    47      24.231  -6.701  50.334   .00   .00
ATOM    134  CA  GLU    48      21.265  -8.715  43.923   .00  1.00
ATOM    135  CB  GLU    48      22.004  -7.476  42.689   .00   .00
ATOM    136  OG  GLU    48      22.469  -4.965  42.294   .00   .00
ATOM    137  CA  PHE    49      21.839 -12.396  43.231   .00  1.00
ATOM    138  CB  PHE    49      20.707 -13.354  42.967   .00  1.00
ATOM    139  CG  PHE    49      19.360 -13.547  44.430   .00   .00
ATOM    140  CD  PHE    49      18.067 -13.686  45.816   .00   .00
ATOM    141  CA  GLU    50      24.010 -11.576  40.233   .00  1.00
ATOM    142  CB  GLU    50      25.557 -12.609  39.932   .00   .00
ATOM    143  OG  GLU    50      28.098 -13.057  41.002   .00   .00
ATOM    144  CA  ALA    51      21.457 -13.057  37.893   .00  1.00
ATOM    145  CB  ALA    51      19.997 -13.318  38.318   .00  1.00
ATOM    146  CA  ASN    52      21.940 -12.173  34.217   .00  1.00
ATOM    147  CB  ASN    52      22.584 -13.326  33.412   .00  1.00
ATOM    148  CG  ASN    52      24.363 -13.843  34.031   .00   .00
ATOM    149  CA  LEU    53      18.648 -10.664  33.198   .00  1.00
ATOM    150  CB  LEU    53      17.956  -9.593  34.091   .00  1.00
ATOM    151  CG  LEU    53      17.492 -10.265  35.772   .00   .00
ATOM    152  CA  ALA    54      18.066  -9.554  29.603   .00  1.00
ATOM    153  CB  ALA    54      19.080  -9.911  28.485   .00  1.00
ATOM    154  CA  ASP    55      14.418  -9.312  28.657   .00  1.00
ATOM    155  CB  ASP    55      13.701  -9.904  27.448   .00  1.00
ATOM    156  OG  ASP    55      14.432  -9.245  25.732   .00   .00
ATOM    157  CA  VAL    56      13.309 -11.039  31.834   .00  1.00
ATOM    158  CB  VAL    56      14.577 -12.210  32.667   .00   .00
ATOM    159  CA  LYS    57      11.300  -9.774  34.833   .00  1.00
ATOM    160  CB  LYS    57      10.046  -8.916  34.702   .00  1.00
ATOM    161  CG  LYS    57       9.153  -6.958  33.267   .00   .00
ATOM    162  ND  LYS    57       7.021  -5.946  33.287   .00   .00
ATOM    163  CA  LEU    58      11.600 -11.739  38.076   .00  1.00
ATOM    164  CB  LEU    58      13.034 -11.845  38.627   .00  1.00
ATOM    165  CG  LEU    58      14.258 -12.516  37.457   .00   .00
ATOM    166  CA  VAL    59       8.840 -11.057  40.657   .00  1.00
ATOM    167  CB  VAL    59       7.037 -10.586  40.089   .00   .00
ATOM    168  CA  ALA    60       9.225 -12.690  44.038   .00  1.00
ATOM    169  CB  ALA    60       8.380 -13.898  44.450   .00  1.00
ATOM    170  CA  LEU    61      12.580 -14.270  43.263   .00  1.00
ATOM    171  CB  LEU    61      12.828 -15.113  42.050   .00  1.00
ATOM    172  CG  LEU    61      14.648 -15.504  41.642   .00   .00
ATOM    173  CA  ILE    62      14.347 -11.010  42.559   .00  1.00
ATOM    174  CB  ILE    62      16.474 -11.149  41.682   .00   .00
ATOM    175  CA  GLU    63      13.326  -7.373  41.928   .00  1.00
ATOM    176  CB  GLU    63      12.762  -6.995  40.199   .00   .00
ATOM    177  OG  GLU    63      13.779  -7.305  37.735   .00   .00
ATOM    178  CA  GLYC   64      12.006  -4.805  44.484   .00  1.00
TER              GLYC   64
ENDDAT 3.1
END
