

PFRMAT DKF1
TARGET T0033
AUTHOR 6682-2204-3506 Bernd Kramer, GMD-SCAI, Bernd.Kramer@gmd.de
AUTHOR 6682-2204-3506 Thomas Lengauer, GMD-SCAI, Lengauer@gmd.de
AUTHOR 6682-2204-3506 Matthias Rarey, GMD-SCAI, Rarey@gmd.de
REMARK ===================================================================
REMARK 1.Preparation of input data
REMARK   The ligand is generated and energy minimized to fall in an 
REMARK   arbitrary low-energy conformation. Favorable torsion angles at 
REMARK   rotatable bonds, interaction types, and interaction geometries 
REMARK   are automatically assigned.
REMARK   The active site of the protein is selected manually by comparing
REMARK   the protein structure to complexes where the same protein is
REMARK   involved (typically 8-10 A around the ligand). Hydrogens at
REMARK   hydrogen bond donors and acceptors are added in standard 
REMARK   geometries automatically. Interaction types and interaction 
REMARK   geometries are also assigned automatically.
REMARK 2.Docking
REMARK   Complexes are generated using our docking software FlexX (see
REMARK   Ref.). FlexX is a docking tool based on an incremental 
REMARK   construction algorithm producing results in approximately
REMARK   1-3 minutes for one pair of a receptor and a ligand molecule. 
REMARK   No refinement of the produced structures is performed.
REMARK 3.Selection of models
REMARK   The selection of a set of models and the assignment of 
REMARK   confidences is done manually again. Here we have considered
REMARK   phenomena like intramolecular hydrogen bonds which are not 
REMARK   modeled yet. FlexX' energy predictions for the different models
REMARK   are used as a guideline for the selection.
REMARK ===================================================================
REMARK References: 
REMARK   Matthias Rarey, Stephan Wefing and Thomas Lengauer:
REMARK   Placement of medium-sized molecular fragments into active sites
REMARK   of proteins, JCAMD (1996) 10, 41--54
REMARK
REMARK   Matthias Rarey, Bernd Kramer, Thomas Lengauer and Gerhard Klebe: 
REMARK   A Fast Flexible Docking Method using an Incremental Construction 
REMARK   Algorithm, JMB (1996) 261, 470--489
REMARK ===================================================================
MODEL     1 CONFIDENCE .6
HETATM    1  C11 PTM     1      30.016  14.920  16.428                
HETATM    2  C12 PTM     1      29.592  15.622  17.562                
HETATM    3 H12  PTM     1      29.528  16.706  17.545                
HETATM    4  C13 PTM     1      29.254  14.938  18.733                
HETATM    5 H13  PTM     1      28.909  15.484  19.605                
HETATM    6  C14 PTM     1      29.361  13.546  18.785                
HETATM    7  C15 PTM     1      29.801  12.840  17.663                
HETATM    8 H15  PTM     1      29.896  11.760  17.706                
HETATM    9  C16 PTM     1      30.114  13.525  16.485                
HETATM   10 H16  PTM     1      30.427  12.962  15.611                
HETATM   11  C17 PTM     1      30.366  15.664  15.154                
HETATM   12  N11 PTM     1      30.268  16.968  15.122                
HETATM   13  N12 PTM     1      30.761  14.989  14.105                
HETATM   14 H111 PTM     1      30.502  17.490  14.264                
HETATM   15 H112 PTM     1      29.970  17.497  15.955                
HETATM   16 H121 PTM     1      31.005  15.470  13.226                
HETATM   17 H122 PTM     1      30.849  13.963  14.145                
HETATM   18  O1  PTM     1      29.032  12.867  19.958                
HETATM   19  CA1 PTM     1      29.192  11.441  19.870                
HETATM   20 HA11 PTM     1      28.540  11.045  19.073                
HETATM   21 HA12 PTM     1      30.237  11.187  19.630                
HETATM   22  CA2 PTM     1      28.798  10.800  21.225                
HETATM   23 HA21 PTM     1      27.725  10.550  21.202                
HETATM   24 HA22 PTM     1      29.369   9.867  21.363                
HETATM   25  CA3 PTM     1      29.080  11.765  22.409                
HETATM   26 HA31 PTM     1      30.153  12.018  22.426                
HETATM   27 HA32 PTM     1      28.507  12.696  22.269                
HETATM   28  CA4 PTM     1      28.685  11.121  23.766                
HETATM   29 HA41 PTM     1      29.260  10.193  23.917                
HETATM   30 HA42 PTM     1      27.613  10.866  23.760                
HETATM   31  CA5 PTM     1      28.965  12.080  24.951                
HETATM   32 HA51 PTM     1      29.815  12.736  24.704                
HETATM   33 HA52 PTM     1      28.076  12.703  25.144                
HETATM   34  O2  PTM     1      29.269  11.297  26.117                
HETATM   35  C21 PTM     1      25.901  10.308  28.424                
HETATM   36  C22 PTM     1      27.154  10.460  29.029                
HETATM   37 H22  PTM     1      27.269  10.307  30.097                
HETATM   38  C23 PTM     1      28.273  10.799  28.263                
HETATM   39 H23  PTM     1      29.240  10.928  28.738                
HETATM   40  C24 PTM     1      28.150  10.970  26.882                
HETATM   41  C25 PTM     1      26.903  10.814  26.271                
HETATM   42 H25  PTM     1      26.806  10.946  25.198                
HETATM   43  C26 PTM     1      25.782  10.492  27.042                
HETATM   44 H26  PTM     1      24.816  10.393  26.557                
HETATM   45  C27 PTM     1      24.686   9.951  29.259                
HETATM   46  N21 PTM     1      24.818   9.784  30.550                
HETATM   47  N22 PTM     1      23.523   9.814  28.674                
HETATM   48 H211 PTM     1      25.738   9.895  31.000                
HETATM   49 H212 PTM     1      24.004   9.555  31.140                
HETATM   50 H221 PTM     1      22.685   9.557  29.218                
HETATM   51 H222 PTM     1      23.430   9.947  27.657                
ENDMDL
