

PFRMAT DKF1
TARGET T0033
AUTHOR 6682-2204-3506 Bernd Kramer, GMD-SCAI, Bernd.Kramer@gmd.de
AUTHOR 6682-2204-3506 Thomas Lengauer, GMD-SCAI, Lengauer@gmd.de
AUTHOR 6682-2204-3506 Matthias Rarey, GMD-SCAI, Rarey@gmd.de
REMARK ===================================================================
REMARK 1.Preparation of input data
REMARK   The ligand is generated and energy minimized to fall in an 
REMARK   arbitrary low-energy conformation. Favorable torsion angles at 
REMARK   rotatable bonds, interaction types, and interaction geometries 
REMARK   are automatically assigned.
REMARK   The active site of the protein is selected manually by comparing
REMARK   the protein structure to complexes where the same protein is
REMARK   involved (typically 8-10 A around the ligand). Hydrogens at
REMARK   hydrogen bond donors and acceptors are added in standard 
REMARK   geometries automatically. Interaction types and interaction 
REMARK   geometries are also assigned automatically.
REMARK 2.Docking
REMARK   Complexes are generated using our docking software FlexX (see
REMARK   Ref.). FlexX is a docking tool based on an incremental 
REMARK   construction algorithm producing results in approximately
REMARK   1-3 minutes for one pair of a receptor and a ligand molecule. 
REMARK   No refinement of the produced structures is performed.
REMARK 3.Selection of models
REMARK   The selection of a set of models and the assignment of 
REMARK   confidences is done manually again. Here we have considered
REMARK   phenomena like intramolecular hydrogen bonds which are not 
REMARK   modeled yet. FlexX' energy predictions for the different models
REMARK   are used as a guideline for the selection.
REMARK ===================================================================
REMARK References: 
REMARK   Matthias Rarey, Stephan Wefing and Thomas Lengauer:
REMARK   Placement of medium-sized molecular fragments into active sites
REMARK   of proteins, JCAMD (1996) 10, 41--54
REMARK
REMARK   Matthias Rarey, Bernd Kramer, Thomas Lengauer and Gerhard Klebe: 
REMARK   A Fast Flexible Docking Method using an Incremental Construction 
REMARK   Algorithm, JMB (1996) 261, 470--489
REMARK ===================================================================
MODEL    18 CONFIDENCE .2
HETATM    1  C11 PTM     1      30.345  15.051  16.471                
HETATM    2  C12 PTM     1      29.836  15.743  17.576                
HETATM    3 H12  PTM     1      29.733  16.823  17.546                
HETATM    4  C13 PTM     1      29.464  15.054  18.733                
HETATM    5 H13  PTM     1      29.054  15.593  19.582                
HETATM    6  C14 PTM     1      29.620  13.668  18.803                
HETATM    7  C15 PTM     1      30.144  12.972  17.710                
HETATM    8 H15  PTM     1      30.277  11.896  17.768                
HETATM    9  C16 PTM     1      30.493  13.660  16.544                
HETATM   10 H16  PTM     1      30.872  13.104  15.693                
HETATM   11  C17 PTM     1      30.733  15.799  15.211                
HETATM   12  N11 PTM     1      30.588  17.098  15.163                
HETATM   13  N12 PTM     1      31.207  15.133  14.189                
HETATM   14 H111 PTM     1      30.846  17.623  14.314                
HETATM   15 H112 PTM     1      30.227  17.621  15.975                
HETATM   16 H121 PTM     1      31.478  15.618  13.320                
HETATM   17 H122 PTM     1      31.332  14.111  14.242                
HETATM   18  O1  PTM     1      29.256  12.984  19.962                
HETATM   19  CA1 PTM     1      28.818  11.635  19.729                
HETATM   20 HA11 PTM     1      29.326  11.229  18.839                
HETATM   21 HA12 PTM     1      29.060  10.999  20.596                
HETATM   22  CA2 PTM     1      27.286  11.631  19.495                
HETATM   23 HA21 PTM     1      26.838  12.473  20.048                
HETATM   24 HA22 PTM     1      27.084  11.776  18.420                
HETATM   25  CA3 PTM     1      26.644  10.299  19.970                
HETATM   26 HA31 PTM     1      27.097   9.459  19.420                
HETATM   27 HA32 PTM     1      26.846  10.157  21.045                
HETATM   28  CA4 PTM     1      25.109  10.297  19.735                
HETATM   29 HA41 PTM     1      24.900  10.431  18.661                
HETATM   30 HA42 PTM     1      24.646  11.133  20.283                
HETATM   31  CA5 PTM     1      24.464   8.970  20.208                
HETATM   32 HA51 PTM     1      25.041   8.558  21.052                
HETATM   33 HA52 PTM     1      23.429   9.156  20.539                
HETATM   34  O2  PTM     1      24.463   8.040  19.112                
HETATM   35  C21 PTM     1      21.269   5.312  19.210                
HETATM   36  C22 PTM     1      22.207   5.270  18.171                
HETATM   37 H22  PTM     1      22.107   4.541  17.373                
HETATM   38  C23 PTM     1      23.275   6.170  18.144                
HETATM   39 H23  PTM     1      24.006   6.125  17.344                
HETATM   40  C24 PTM     1      23.403   7.134  19.147                
HETATM   41  C25 PTM     1      22.467   7.187  20.183                
HETATM   42 H25  PTM     1      22.565   7.936  20.962                
HETATM   43  C26 PTM     1      21.409   6.274  20.217                
HETATM   44 H26  PTM     1      20.701   6.314  21.039                
HETATM   45  C27 PTM     1      20.117   4.327  19.243                
HETATM   46  N21 PTM     1      20.004   3.436  18.292                
HETATM   47  N22 PTM     1      19.251   4.384  20.223                
HETATM   48 H211 PTM     1      20.691   3.400  17.525                
HETATM   49 H212 PTM     1      19.237   2.747  18.300                
HETATM   50 H221 PTM     1      18.451   3.735  20.260                
HETATM   51 H222 PTM     1      19.349   5.090  20.967                
ENDMDL
