

PFRMAT DKF1
TARGET T0033
AUTHOR 6682-2204-3506 Bernd Kramer, GMD-SCAI, Bernd.Kramer@gmd.de
AUTHOR 6682-2204-3506 Thomas Lengauer, GMD-SCAI, Lengauer@gmd.de
AUTHOR 6682-2204-3506 Matthias Rarey, GMD-SCAI, Rarey@gmd.de
REMARK ===================================================================
REMARK 1.Preparation of input data
REMARK   The ligand is generated and energy minimized to fall in an 
REMARK   arbitrary low-energy conformation. Favorable torsion angles at 
REMARK   rotatable bonds, interaction types, and interaction geometries 
REMARK   are automatically assigned.
REMARK   The active site of the protein is selected manually by comparing
REMARK   the protein structure to complexes where the same protein is
REMARK   involved (typically 8-10 A around the ligand). Hydrogens at
REMARK   hydrogen bond donors and acceptors are added in standard 
REMARK   geometries automatically. Interaction types and interaction 
REMARK   geometries are also assigned automatically.
REMARK 2.Docking
REMARK   Complexes are generated using our docking software FlexX (see
REMARK   Ref.). FlexX is a docking tool based on an incremental 
REMARK   construction algorithm producing results in approximately
REMARK   1-3 minutes for one pair of a receptor and a ligand molecule. 
REMARK   No refinement of the produced structures is performed.
REMARK 3.Selection of models
REMARK   The selection of a set of models and the assignment of 
REMARK   confidences is done manually again. Here we have considered
REMARK   phenomena like intramolecular hydrogen bonds which are not 
REMARK   modeled yet. FlexX' energy predictions for the different models
REMARK   are used as a guideline for the selection.
REMARK ===================================================================
REMARK References: 
REMARK   Matthias Rarey, Stephan Wefing and Thomas Lengauer:
REMARK   Placement of medium-sized molecular fragments into active sites
REMARK   of proteins, JCAMD (1996) 10, 41--54
REMARK
REMARK   Matthias Rarey, Bernd Kramer, Thomas Lengauer and Gerhard Klebe: 
REMARK   A Fast Flexible Docking Method using an Incremental Construction 
REMARK   Algorithm, JMB (1996) 261, 470--489
REMARK ===================================================================
MODEL     8 CONFIDENCE .2
HETATM    1  C11 PTM     1      29.579  14.816  16.024                
HETATM    2  C12 PTM     1      29.052  15.470  17.143                
HETATM    3 H12  PTM     1      29.078  16.553  17.209                
HETATM    4  C13 PTM     1      28.496  14.736  18.195                
HETATM    5 H13  PTM     1      28.073  15.248  19.054                
HETATM    6  C14 PTM     1      28.483  13.341  18.144                
HETATM    7  C15 PTM     1      29.022  12.681  17.037                
HETATM    8 H15  PTM     1      29.024  11.596  17.002                
HETATM    9  C16 PTM     1      29.556  13.417  15.975                
HETATM   10 H16  PTM     1      29.946  12.892  15.109                
HETATM   11  C17 PTM     1      30.167  15.615  14.876                
HETATM   12  N11 PTM     1      30.178  16.922  14.941                
HETATM   13  N12 PTM     1      30.654  14.985  13.839                
HETATM   14 H111 PTM     1      30.574  17.481  14.171                
HETATM   15 H112 PTM     1      29.806  17.414  15.767                
HETATM   16 H121 PTM     1      31.059  15.504  13.046                
HETATM   17 H122 PTM     1      30.653  13.954  13.804                
HETATM   18  O1  PTM     1      27.936  12.611  19.198                
HETATM   19  CA1 PTM     1      27.367  11.352  18.803                
HETATM   20 HA11 PTM     1      26.557  11.524  18.075                
HETATM   21 HA12 PTM     1      28.135  10.716  18.333                
HETATM   22  CA2 PTM     1      26.794  10.637  20.053                
HETATM   23 HA21 PTM     1      25.737  10.926  20.176                
HETATM   24 HA22 PTM     1      26.839   9.546  19.898                
HETATM   25  CA3 PTM     1      27.587  11.015  21.333                
HETATM   26 HA31 PTM     1      28.644  10.730  21.206                
HETATM   27 HA32 PTM     1      27.539  12.106  21.486                
HETATM   28  CA4 PTM     1      27.011  10.299  22.585                
HETATM   29 HA41 PTM     1      27.062   9.207  22.442                
HETATM   30 HA42 PTM     1      25.954  10.579  22.722                
HETATM   31  CA5 PTM     1      27.799  10.673  23.865                
HETATM   32 HA51 PTM     1      27.735  11.760  24.035                
HETATM   33 HA52 PTM     1      27.367  10.149  24.735                
HETATM   34  O2  PTM     1      29.171  10.280  23.697                
HETATM   35  C21 PTM     1      31.599  11.164  27.008                
HETATM   36  C22 PTM     1      30.495  11.968  26.705                
HETATM   37 H22  PTM     1      30.266  12.836  27.314                
HETATM   38  C23 PTM     1      29.680  11.667  25.609                
HETATM   39 H23  PTM     1      28.817  12.286  25.385                
HETATM   40  C24 PTM     1      29.977  10.571  24.796                
HETATM   41  C25 PTM     1      31.083   9.768  25.090                
HETATM   42 H25  PTM     1      31.315   8.916  24.458                
HETATM   43  C26 PTM     1      31.885  10.060  26.196                
HETATM   44 H26  PTM     1      32.728   9.415  26.424                
HETATM   45  C27 PTM     1      32.476  11.484  28.204                
HETATM   46  N21 PTM     1      32.191  12.520  28.951                
HETATM   47  N22 PTM     1      33.503  10.720  28.471                
HETATM   48 H211 PTM     1      31.379  13.116  28.732                
HETATM   49 H212 PTM     1      32.763  12.750  29.777                
HETATM   50 H221 PTM     1      34.123  10.926  29.269                
HETATM   51 H222 PTM     1      33.719   9.906  27.876                
ENDMDL
