

PFRMAT DKF1
TARGET T0034
AUTHOR 6682-2204-3506 Bernd Kramer, GMD-SCAI, Bernd.Kramer@gmd.de
AUTHOR 6682-2204-3506 Thomas Lengauer, GMD-SCAI, Lengauer@gmd.de
AUTHOR 6682-2204-3506 Matthias Rarey, GMD-SCAI, Rarey@gmd.de
REMARK ===================================================================
REMARK 1.Preparation of input data
REMARK   The ligand is generated and energy minimized to fall in an 
REMARK   arbitrary low-energy conformation. Favorable torsion angles at 
REMARK   rotatable bonds, interaction types, and interaction geometries 
REMARK   are automatically assigned.
REMARK   The active site of the protein is selected manually by comparing
REMARK   the protein structure to complexes where the same protein is
REMARK   involved (typically 8-10 A around the ligand). Hydrogens at
REMARK   hydrogen bond donors and acceptors are added in standard 
REMARK   geometries automatically. Interaction types and interaction 
REMARK   geometries are also assigned automatically.
REMARK 2.Docking
REMARK   Complexes are generated using our docking software FlexX (see
REMARK   Ref.). FlexX is a docking tool based on an incremental 
REMARK   construction algorithm producing results in approximately
REMARK   1-3 minutes for one pair of a receptor and a ligand molecule. 
REMARK   No refinement of the produced structures is performed.
REMARK 3.Selection of models
REMARK   The selection of a set of models and the assignment of 
REMARK   confidences is done manually again. Here we have considered
REMARK   phenomena like intramolecular hydrogen bonds which are not 
REMARK   modeled yet. FlexX' energy predictions for the different models
REMARK   are used as a guideline for the selection.
REMARK ===================================================================
REMARK References: 
REMARK   Matthias Rarey, Stephan Wefing and Thomas Lengauer:
REMARK   Placement of medium-sized molecular fragments into active sites
REMARK   of proteins, JCAMD (1996) 10, 41--54
REMARK
REMARK   Matthias Rarey, Bernd Kramer, Thomas Lengauer and Gerhard Klebe: 
REMARK   A Fast Flexible Docking Method using an Incremental Construction 
REMARK   Algorithm, JMB (1996) 261, 470--489
REMARK ===================================================================
MODEL     1 CONFIDENCE .6
HETATM    1  N1  AML     1      27.360  13.127  19.778                
HETATM    2  C2  AML     1      27.900  14.088  19.001                
HETATM    3  C3  AML     1      28.397  13.752  17.734                
HETATM    4  N4  AML     1      28.323  12.470  17.316                
HETATM    5  C5  AML     1      27.783  11.511  18.096                
HETATM    6  C6  AML     1      27.286  11.846  19.363                
HETATM    7  N21 AML     1      27.938  15.350  19.488                
HETATM    8 H211 AML     1      28.344  16.107  18.919                
HETATM    9 H212 AML     1      27.565  15.568  20.426                
HETATM   10  N61 AML     1      26.730  10.938  20.201                
HETATM   11 H611 AML     1      26.661   9.952  19.908                
HETATM   12 H612 AML     1      26.372  11.212  21.127                
HETATM   13  CL  AML     1      27.727   9.872  17.478                
HETATM   14  C31 AML     1      29.016  14.781  16.811                
HETATM   15  O31 AML     1      29.075  15.937  17.202                
HETATM   16  N32 AML     1      29.458  14.395  15.642                
HETATM   17 HN32 AML     1      29.360  13.395  15.410                
HETATM   18  C33 AML     1      30.011  15.203  14.767                
HETATM   19  N34 AML     1      30.167  16.482  14.998                
HETATM   20  N35 AML     1      30.424  14.720  13.622                
HETATM   21 H341 AML     1      29.858  16.906  15.883                
HETATM   22 H342 AML     1      30.604  17.095  14.294                
HETATM   23 H351 AML     1      30.861  15.329  12.916                
HETATM   24 H352 AML     1      30.322  13.720  13.397                
ENDMDL
