

PFRMAT DKF1
TARGET T0035
AUTHOR 6682-2204-3506 Bernd Kramer, GMD-SCAI, Bernd.Kramer@gmd.de
AUTHOR 6682-2204-3506 Thomas Lengauer, GMD-SCAI, Lengauer@gmd.de
AUTHOR 6682-2204-3506 Matthias Rarey, GMD-SCAI, Rarey@gmd.de
REMARK ===================================================================
REMARK 1.Preparation of input data
REMARK   The ligand is generated and energy minimized to fall in an 
REMARK   arbitrary low-energy conformation. Favorable torsion angles at 
REMARK   rotatable bonds, interaction types, and interaction geometries 
REMARK   are automatically assigned.
REMARK   The active site of the protein is selected manually by comparing
REMARK   the protein structure to complexes where the same protein is
REMARK   involved (typically 8-10 A around the ligand). Hydrogens at
REMARK   hydrogen bond donors and acceptors are added in standard 
REMARK   geometries automatically. Interaction types and interaction 
REMARK   geometries are also assigned automatically.
REMARK 2.Docking
REMARK   Complexes are generated using our docking software FlexX (see
REMARK   Ref.). FlexX is a docking tool based on an incremental 
REMARK   construction algorithm producing results in approximately
REMARK   1-3 minutes for one pair of a receptor and a ligand molecule. 
REMARK   No refinement of the produced structures is performed.
REMARK 3.Selection of models
REMARK   The selection of a set of models and the assignment of 
REMARK   confidences is done manually again. Here we have considered
REMARK   phenomena like intramolecular hydrogen bonds which are not 
REMARK   modeled yet. FlexX' energy predictions for the different models
REMARK   are used as a guideline for the selection.
REMARK ===================================================================
REMARK References: 
REMARK   Matthias Rarey, Stephan Wefing and Thomas Lengauer:
REMARK   Placement of medium-sized molecular fragments into active sites
REMARK   of proteins, JCAMD (1996) 10, 41--54
REMARK
REMARK   Matthias Rarey, Bernd Kramer, Thomas Lengauer and Gerhard Klebe: 
REMARK   A Fast Flexible Docking Method using an Incremental Construction 
REMARK   Algorithm, JMB (1996) 261, 470--489
REMARK ===================================================================
MODEL     1 CONFIDENCE 0.33
HETATM    1 C19  SBA     1      -5.414  21.900  34.829                
HETATM    2 C18  SBA     1      -6.389  22.270  35.666                
HETATM    3 S24  SBA     1      -6.483  21.232  37.111                
HETATM    4 C23  SBA     1      -5.102  20.299  36.480                
HETATM    5 C22  SBA     1      -4.647  20.749  35.308                
HETATM    6 C16  SBA     1      -7.318  23.393  35.472                
HETATM    7 O17  SBA     1      -7.864  23.560  34.353                
HETATM    8 O21  SBA     1      -7.537  24.160  36.441                
HETATM    9 C14  SBA     1      -6.034  22.582  32.637                
HETATM   10 O15  SBA     1      -7.138  22.085  32.796                
HETATM   11 N20  SBA     1      -5.115  22.534  33.559                
HETATM   12 N11  SBA     1      -4.338  23.799  31.305                
HETATM   13 C12  SBA     1      -5.699  23.249  31.320                
HETATM   14 C13  SBA     1      -5.836  22.274  30.122                
HETATM   15 C9   SBA     1      -3.845  24.418  30.263                
HETATM   16 O10  SBA     1      -3.243  23.809  29.391                
HETATM   17 O8   SBA     1      -4.022  25.744  30.169                
HETATM   18 C7   SBA     1      -5.215  26.271  30.774                
HETATM   19 C4   SBA     1      -6.363  25.567  30.042                
HETATM   20 C5   SBA     1      -7.286  24.769  30.729                
HETATM   21 C6   SBA     1      -8.372  24.205  30.052                
HETATM   22 C1   SBA     1      -8.524  24.408  28.678                
HETATM   23 C2   SBA     1      -7.581  25.167  27.980                
HETATM   24 C3   SBA     1      -6.502  25.739  28.660                
ENDMDL
