

PFRMAT DKF1
TARGET T0035
AUTHOR 6682-2204-3506 Bernd Kramer, GMD-SCAI, Bernd.Kramer@gmd.de
AUTHOR 6682-2204-3506 Thomas Lengauer, GMD-SCAI, Lengauer@gmd.de
AUTHOR 6682-2204-3506 Matthias Rarey, GMD-SCAI, Rarey@gmd.de
REMARK ===================================================================
REMARK 1.Preparation of input data
REMARK   The ligand is generated and energy minimized to fall in an 
REMARK   arbitrary low-energy conformation. Favorable torsion angles at 
REMARK   rotatable bonds, interaction types, and interaction geometries 
REMARK   are automatically assigned.
REMARK   The active site of the protein is selected manually by comparing
REMARK   the protein structure to complexes where the same protein is
REMARK   involved (typically 8-10 A around the ligand). Hydrogens at
REMARK   hydrogen bond donors and acceptors are added in standard 
REMARK   geometries automatically. Interaction types and interaction 
REMARK   geometries are also assigned automatically.
REMARK 2.Docking
REMARK   Complexes are generated using our docking software FlexX (see
REMARK   Ref.). FlexX is a docking tool based on an incremental 
REMARK   construction algorithm producing results in approximately
REMARK   1-3 minutes for one pair of a receptor and a ligand molecule. 
REMARK   No refinement of the produced structures is performed.
REMARK 3.Selection of models
REMARK   The selection of a set of models and the assignment of 
REMARK   confidences is done manually again. Here we have considered
REMARK   phenomena like intramolecular hydrogen bonds which are not 
REMARK   modeled yet. FlexX' energy predictions for the different models
REMARK   are used as a guideline for the selection.
REMARK ===================================================================
REMARK References: 
REMARK   Matthias Rarey, Stephan Wefing and Thomas Lengauer:
REMARK   Placement of medium-sized molecular fragments into active sites
REMARK   of proteins, JCAMD (1996) 10, 41--54
REMARK
REMARK   Matthias Rarey, Bernd Kramer, Thomas Lengauer and Gerhard Klebe: 
REMARK   A Fast Flexible Docking Method using an Incremental Construction 
REMARK   Algorithm, JMB (1996) 261, 470--489
REMARK ===================================================================
MODEL     2 CONFIDENCE 0.33
HETATM    1 C19  SBA     1      -6.259  16.983  34.751                
HETATM    2 C18  SBA     1      -6.459  15.683  34.515                
HETATM    3 S24  SBA     1      -8.106  15.354  33.919                
HETATM    4 C23  SBA     1      -8.460  17.101  34.010                
HETATM    5 C22  SBA     1      -7.429  17.822  34.445                
HETATM    6 C16  SBA     1      -5.476  14.597  34.710                
HETATM    7 O17  SBA     1      -4.324  14.869  35.138                
HETATM    8 O21  SBA     1      -5.821  13.417  34.438                
HETATM    9 C14  SBA     1      -4.105  17.947  34.447                
HETATM   10 O15  SBA     1      -3.923  17.407  33.367                
HETATM   11 N20  SBA     1      -5.032  17.550  35.270                
HETATM   12 N11  SBA     1      -1.856  18.975  34.314                
HETATM   13 C12  SBA     1      -3.210  19.092  34.869                
HETATM   14 C13  SBA     1      -3.786  20.468  34.444                
HETATM   15 C9   SBA     1      -1.629  18.946  33.025                
HETATM   16 O10  SBA     1      -0.731  19.610  32.526                
HETATM   17 O8   SBA     1      -2.403  18.162  32.261                
HETATM   18 C7   SBA     1      -2.616  18.601  30.909                
HETATM   19 C4   SBA     1      -2.059  17.465  30.042                
HETATM   20 C5   SBA     1      -2.576  16.167  30.122                
HETATM   21 C6   SBA     1      -2.109  15.168  29.262                
HETATM   22 C1   SBA     1      -1.098  15.454  28.340                
HETATM   23 C2   SBA     1      -0.548  16.737  28.287                
HETATM   24 C3   SBA     1      -1.023  17.737  29.141                
ENDMDL
