

PFRMAT DKF1
TARGET T0035
AUTHOR 6682-2204-3506 Bernd Kramer, GMD-SCAI, Bernd.Kramer@gmd.de
AUTHOR 6682-2204-3506 Thomas Lengauer, GMD-SCAI, Lengauer@gmd.de
AUTHOR 6682-2204-3506 Matthias Rarey, GMD-SCAI, Rarey@gmd.de
REMARK ===================================================================
REMARK 1.Preparation of input data
REMARK   The ligand is generated and energy minimized to fall in an 
REMARK   arbitrary low-energy conformation. Favorable torsion angles at 
REMARK   rotatable bonds, interaction types, and interaction geometries 
REMARK   are automatically assigned.
REMARK   The active site of the protein is selected manually by comparing
REMARK   the protein structure to complexes where the same protein is
REMARK   involved (typically 8-10 A around the ligand). Hydrogens at
REMARK   hydrogen bond donors and acceptors are added in standard 
REMARK   geometries automatically. Interaction types and interaction 
REMARK   geometries are also assigned automatically.
REMARK 2.Docking
REMARK   Complexes are generated using our docking software FlexX (see
REMARK   Ref.). FlexX is a docking tool based on an incremental 
REMARK   construction algorithm producing results in approximately
REMARK   1-3 minutes for one pair of a receptor and a ligand molecule. 
REMARK   No refinement of the produced structures is performed.
REMARK 3.Selection of models
REMARK   The selection of a set of models and the assignment of 
REMARK   confidences is done manually again. Here we have considered
REMARK   phenomena like intramolecular hydrogen bonds which are not 
REMARK   modeled yet. FlexX' energy predictions for the different models
REMARK   are used as a guideline for the selection.
REMARK ===================================================================
REMARK References: 
REMARK   Matthias Rarey, Stephan Wefing and Thomas Lengauer:
REMARK   Placement of medium-sized molecular fragments into active sites
REMARK   of proteins, JCAMD (1996) 10, 41--54
REMARK
REMARK   Matthias Rarey, Bernd Kramer, Thomas Lengauer and Gerhard Klebe: 
REMARK   A Fast Flexible Docking Method using an Incremental Construction 
REMARK   Algorithm, JMB (1996) 261, 470--489
REMARK ===================================================================
MODEL     3 CONFIDENCE 0.33
HETATM    1 C19  SBA     1      -9.341  20.909  34.240                
HETATM    2 C18  SBA     1      -8.624  22.012  34.483                
HETATM    3 S24  SBA     1      -7.981  22.712  32.978                
HETATM    4 C23  SBA     1      -8.775  21.405  32.032                
HETATM    5 C22  SBA     1      -9.441  20.554  32.800                
HETATM    6 C16  SBA     1      -8.354  22.627  35.819                
HETATM    7 O17  SBA     1      -8.018  21.900  36.793                
HETATM    8 O21  SBA     1      -8.471  23.874  35.947                
HETATM    9 C14  SBA     1     -10.854  20.632  36.049                
HETATM   10 O15  SBA     1     -11.560  21.563  35.694                
HETATM   11 N20  SBA     1      -9.962  20.104  35.264                
HETATM   12 N11  SBA     1     -11.396  21.122  38.415                
HETATM   13 C12  SBA     1     -10.987  20.089  37.456                
HETATM   14 C13  SBA     1     -12.009  18.926  37.537                
HETATM   15 C9   SBA     1     -12.521  21.780  38.298                
HETATM   16 O10  SBA     1     -13.549  21.371  38.817                
HETATM   17 O8   SBA     1     -12.518  22.922  37.597                
HETATM   18 C7   SBA     1     -11.257  23.320  37.032                
HETATM   19 C4   SBA     1     -10.966  24.687  37.663                
HETATM   20 C5   SBA     1     -11.851  25.273  38.575                
HETATM   21 C6   SBA     1     -11.523  26.481  39.199                
HETATM   22 C1   SBA     1     -10.323  27.126  38.890                
HETATM   23 C2   SBA     1      -9.456  26.568  37.947                
HETATM   24 C3   SBA     1      -9.781  25.355  37.332                
ENDMDL
