

PFRMAT DKF1
TARGET T0036
AUTHOR 6682-2204-3506 Bernd Kramer, GMD-SCAI, Bernd.Kramer@gmd.de
AUTHOR 6682-2204-3506 Thomas Lengauer, GMD-SCAI, Lengauer@gmd.de
AUTHOR 6682-2204-3506 Matthias Rarey, GMD-SCAI, Rarey@gmd.de
REMARK ===================================================================
REMARK 1.Preparation of input data
REMARK   The ligand is generated and energy minimized to fall in an 
REMARK   arbitrary low-energy conformation. Favorable torsion angles at 
REMARK   rotatable bonds, interaction types, and interaction geometries 
REMARK   are automatically assigned.
REMARK   The active site of the protein is selected manually by comparing
REMARK   the protein structure to complexes where the same protein is
REMARK   involved (typically 8-10 A around the ligand). Hydrogens at
REMARK   hydrogen bond donors and acceptors are added in standard 
REMARK   geometries automatically. Interaction types and interaction 
REMARK   geometries are also assigned automatically.
REMARK 2.Docking
REMARK   Complexes are generated using our docking software FlexX (see
REMARK   Ref.). FlexX is a docking tool based on an incremental 
REMARK   construction algorithm producing results in approximately
REMARK   1-3 minutes for one pair of a receptor and a ligand molecule. 
REMARK   No refinement of the produced structures is performed.
REMARK 3.Selection of models
REMARK   The selection of a set of models and the assignment of 
REMARK   confidences is done manually again. Here we have considered
REMARK   phenomena like intramolecular hydrogen bonds which are not 
REMARK   modeled yet. FlexX' energy predictions for the different models
REMARK   are used as a guideline for the selection.
REMARK ===================================================================
REMARK References: 
REMARK   Matthias Rarey, Stephan Wefing and Thomas Lengauer:
REMARK   Placement of medium-sized molecular fragments into active sites
REMARK   of proteins, JCAMD (1996) 10, 41--54
REMARK
REMARK   Matthias Rarey, Bernd Kramer, Thomas Lengauer and Gerhard Klebe: 
REMARK   A Fast Flexible Docking Method using an Incremental Construction 
REMARK   Algorithm, JMB (1996) 261, 470--489
REMARK ===================================================================
MODEL     1 CONFIDENCE 1.0
HETATM    1 C19  SBB     1      -7.459  21.388  36.627                
HETATM    2 C18  SBB     1      -6.431  21.782  37.383                
HETATM    3 S24  SBB     1      -4.878  21.094  36.846                
HETATM    4 C23  SBB     1      -5.748  20.253  35.539                
HETATM    5 C22  SBB     1      -7.063  20.487  35.537                
HETATM    6 C25  SBB     1      -8.020  19.900  34.534                
HETATM    7 C16  SBB     1      -6.506  22.682  38.546                
HETATM    8 O17  SBB     1      -5.688  22.549  39.443                
HETATM    9 O21  SBB     1      -7.463  23.622  38.580                
HETATM   10 C14  SBB     1      -9.297  22.878  36.286                
HETATM   11 O15  SBB     1      -8.609  23.569  35.551                
HETATM   12 N20  SBB     1      -8.835  21.801  36.858                
HETATM   13 N11  SBB     1     -11.423  22.291  37.392                
HETATM   14 C12  SBB     1     -10.733  23.272  36.552                
HETATM   15 C13  SBB     1     -10.859  24.672  37.207                
HETATM   16 C9   SBB     1     -12.488  21.654  36.981                
HETATM   17 O10  SBB     1     -12.532  21.172  35.858                
HETATM   18 O8   SBB     1     -13.533  21.537  37.817                
HETATM   19 C7   SBB     1     -13.523  20.367  38.659                
HETATM   20 C4   SBB     1     -14.974  19.966  38.953                
HETATM   21 C5   SBB     1     -15.846  19.632  37.909                
HETATM   22 C6   SBB     1     -17.153  19.220  38.183                
HETATM   23 C1   SBB     1     -17.602  19.150  39.504                
HETATM   24 C2   SBB     1     -16.746  19.506  40.549                
HETATM   25 C3   SBB     1     -15.440  19.923  40.272                
ENDMDL
