

PFRMAT DKF1
TARGET T0040
AUTHOR 6682-2204-3506 Bernd Kramer, GMD-SCAI, Bernd.Kramer@gmd.de
AUTHOR 6682-2204-3506 Thomas Lengauer, GMD-SCAI, Lengauer@gmd.de
AUTHOR 6682-2204-3506 Matthias Rarey, GMD-SCAI, Rarey@gmd.de
REMARK ===================================================================
REMARK 1.Preparation of input data
REMARK   The ligand is generated and energy minimized to fall in an 
REMARK   arbitrary low-energy conformation. Favorable torsion angles at 
REMARK   rotatable bonds, interaction types, and interaction geometries 
REMARK   are automatically assigned.
REMARK   The active site of the protein is selected manually by comparing
REMARK   the protein structure to complexes where the same protein is
REMARK   involved (typically 8-10 A around the ligand). Hydrogens at
REMARK   hydrogen bond donors and acceptors are added in standard 
REMARK   geometries automatically. Interaction types and interaction 
REMARK   geometries are also assigned automatically.
REMARK 2.Docking
REMARK   Complexes are generated using our docking software FlexX (see
REMARK   Ref.). FlexX is a docking tool based on an incremental 
REMARK   construction algorithm producing results in approximately
REMARK   1-3 minutes for one pair of a receptor and a ligand molecule. 
REMARK   No refinement of the produced structures is performed.
REMARK 3.Selection of models
REMARK   The selection of a set of models and the assignment of 
REMARK   confidences is done manually again. Here we have considered
REMARK   phenomena like intramolecular hydrogen bonds which are not 
REMARK   modeled yet. FlexX' energy predictions for the different models
REMARK   are used as a guideline for the selection.
REMARK ===================================================================
REMARK References: 
REMARK   Matthias Rarey, Stephan Wefing and Thomas Lengauer:
REMARK   Placement of medium-sized molecular fragments into active sites
REMARK   of proteins, JCAMD (1996) 10, 41--54
REMARK
REMARK   Matthias Rarey, Bernd Kramer, Thomas Lengauer and Gerhard Klebe: 
REMARK   A Fast Flexible Docking Method using an Incremental Construction 
REMARK   Algorithm, JMB (1996) 261, 470--489
REMARK ===================================================================
MODEL     1 CONFIDENCE 0.3
ATOM      1 N12  INH     1      43.838  24.316  53.271                
ATOM      2 C13  INH     1      44.866  23.743  54.144                
ATOM      3 C30  INH     1      46.006  23.256  53.218                
ATOM      4 C14  INH     1      45.369  24.798  55.098                
ATOM      5 O17  INH     1      44.887  25.919  55.106                
ATOM      6 O15  INH     1      46.360  24.404  55.912                
ATOM      7 C16  INH     1      46.826  25.426  56.815                
ATOM      8 C21  INH     1      45.822  21.809  52.791                
ATOM      9 C22  INH     1      45.100  21.505  51.615                
ATOM     10 C23  INH     1      44.930  20.162  51.220                
ATOM     11 C24  INH     1      45.480  19.122  51.997                
ATOM     12 C25  INH     1      46.200  19.424  53.171                
ATOM     13 C26  INH     1      46.372  20.765  53.569                
ATOM     14 C27  INH     1      46.792  18.301  54.008                
ATOM     15 N28  INH     1      46.632  17.055  53.638                
ATOM     16 N29  INH     1      47.453  18.606  55.097                
ATOM     17 C11  INH     1      42.602  23.885  53.200                
ATOM     18 C10  INH     1      41.765  23.978  51.946                
ATOM     19 N9   INH     1      42.406  23.239  50.869                
ATOM     20 O20  INH     1      42.068  23.382  54.176                
ATOM     21 C1   INH     1      39.953  28.420  47.506                
ATOM     22 C2   INH     1      40.828  27.327  48.098                
ATOM     23 C3   INH     1      40.563  26.835  49.392                
ATOM     24 C4   INH     1      41.374  25.821  49.942                
ATOM     25 C5   INH     1      42.455  25.299  49.195                
ATOM     26 C6   INH     1      42.719  25.794  47.899                
ATOM     27 C7   INH     1      41.906  26.807  47.352                
ATOM     28 S8   INH     1      43.478  24.023  49.884                
ATOM     29 O18  INH     1      44.502  24.620  50.718                
ATOM     30 O19  INH     1      43.866  23.123  48.816                
TER      31      INH     1
ENDMDL
