

PFRMAT DKF1
TARGET T0040
AUTHOR 6682-2204-3506 Bernd Kramer, GMD-SCAI, Bernd.Kramer@gmd.de
AUTHOR 6682-2204-3506 Thomas Lengauer, GMD-SCAI, Lengauer@gmd.de
AUTHOR 6682-2204-3506 Matthias Rarey, GMD-SCAI, Rarey@gmd.de
REMARK ===================================================================
REMARK 1.Preparation of input data
REMARK   The ligand is generated and energy minimized to fall in an 
REMARK   arbitrary low-energy conformation. Favorable torsion angles at 
REMARK   rotatable bonds, interaction types, and interaction geometries 
REMARK   are automatically assigned.
REMARK   The active site of the protein is selected manually by comparing
REMARK   the protein structure to complexes where the same protein is
REMARK   involved (typically 8-10 A around the ligand). Hydrogens at
REMARK   hydrogen bond donors and acceptors are added in standard 
REMARK   geometries automatically. Interaction types and interaction 
REMARK   geometries are also assigned automatically.
REMARK 2.Docking
REMARK   Complexes are generated using our docking software FlexX (see
REMARK   Ref.). FlexX is a docking tool based on an incremental 
REMARK   construction algorithm producing results in approximately
REMARK   1-3 minutes for one pair of a receptor and a ligand molecule. 
REMARK   No refinement of the produced structures is performed.
REMARK 3.Selection of models
REMARK   The selection of a set of models and the assignment of 
REMARK   confidences is done manually again. Here we have considered
REMARK   phenomena like intramolecular hydrogen bonds which are not 
REMARK   modeled yet. FlexX' energy predictions for the different models
REMARK   are used as a guideline for the selection.
REMARK ===================================================================
REMARK References: 
REMARK   Matthias Rarey, Stephan Wefing and Thomas Lengauer:
REMARK   Placement of medium-sized molecular fragments into active sites
REMARK   of proteins, JCAMD (1996) 10, 41--54
REMARK
REMARK   Matthias Rarey, Bernd Kramer, Thomas Lengauer and Gerhard Klebe: 
REMARK   A Fast Flexible Docking Method using an Incremental Construction 
REMARK   Algorithm, JMB (1996) 261, 470--489
REMARK ===================================================================
MODEL     2 CONFIDENCE 0.3
ATOM      1 N12  INH     1      44.595  23.526  54.423                
ATOM      2 C13  INH     1      46.014  23.336  54.111                
ATOM      3 C30  INH     1      46.100  23.095  52.584                
ATOM      4 C14  INH     1      46.790  24.570  54.499                
ATOM      5 O17  INH     1      47.376  25.234  53.659                
ATOM      6 O15  INH     1      46.776  24.865  55.808                
ATOM      7 C16  INH     1      47.522  26.046  56.157                
ATOM      8 C21  INH     1      46.013  21.619  52.229                
ATOM      9 C22  INH     1      45.452  21.222  50.995                
ATOM     10 C23  INH     1      45.372  19.853  50.666                
ATOM     11 C24  INH     1      45.851  18.881  51.568                
ATOM     12 C25  INH     1      46.411  19.276  52.800                
ATOM     13 C26  INH     1      46.492  20.644  53.132                
ATOM     14 C27  INH     1      46.926  18.226  53.771                
ATOM     15 N28  INH     1      46.851  16.956  53.462                
ATOM     16 N29  INH     1      47.438  18.619  54.911                
ATOM     17 C11  INH     1      43.847  24.474  53.914                
ATOM     18 C10  INH     1      42.674  25.084  54.646                
ATOM     19 N9   INH     1      42.531  24.461  55.954                
ATOM     20 O20  INH     1      44.075  24.908  52.796                
ATOM     21 C1   INH     1      35.928  24.158  56.634                
ATOM     22 C2   INH     1      37.413  24.453  56.775                
ATOM     23 C3   INH     1      37.959  24.728  58.046                
ATOM     24 C4   INH     1      39.336  25.002  58.179                
ATOM     25 C5   INH     1      40.169  25.001  57.037                
ATOM     26 C6   INH     1      39.620  24.725  55.765                
ATOM     27 C7   INH     1      38.243  24.452  55.636                
ATOM     28 S8   INH     1      41.902  25.345  57.200                
ATOM     29 O18  INH     1      42.393  24.785  58.443                
ATOM     30 O19  INH     1      42.115  26.752  56.921                
TER      31      INH     1
ENDMDL
