

PFRMAT DKF1
TARGET T0040
AUTHOR 6682-2204-3506 Bernd Kramer, GMD-SCAI, Bernd.Kramer@gmd.de
AUTHOR 6682-2204-3506 Thomas Lengauer, GMD-SCAI, Lengauer@gmd.de
AUTHOR 6682-2204-3506 Matthias Rarey, GMD-SCAI, Rarey@gmd.de
REMARK ===================================================================
REMARK 1.Preparation of input data
REMARK   The ligand is generated and energy minimized to fall in an 
REMARK   arbitrary low-energy conformation. Favorable torsion angles at 
REMARK   rotatable bonds, interaction types, and interaction geometries 
REMARK   are automatically assigned.
REMARK   The active site of the protein is selected manually by comparing
REMARK   the protein structure to complexes where the same protein is
REMARK   involved (typically 8-10 A around the ligand). Hydrogens at
REMARK   hydrogen bond donors and acceptors are added in standard 
REMARK   geometries automatically. Interaction types and interaction 
REMARK   geometries are also assigned automatically.
REMARK 2.Docking
REMARK   Complexes are generated using our docking software FlexX (see
REMARK   Ref.). FlexX is a docking tool based on an incremental 
REMARK   construction algorithm producing results in approximately
REMARK   1-3 minutes for one pair of a receptor and a ligand molecule. 
REMARK   No refinement of the produced structures is performed.
REMARK 3.Selection of models
REMARK   The selection of a set of models and the assignment of 
REMARK   confidences is done manually again. Here we have considered
REMARK   phenomena like intramolecular hydrogen bonds which are not 
REMARK   modeled yet. FlexX' energy predictions for the different models
REMARK   are used as a guideline for the selection.
REMARK ===================================================================
REMARK References: 
REMARK   Matthias Rarey, Stephan Wefing and Thomas Lengauer:
REMARK   Placement of medium-sized molecular fragments into active sites
REMARK   of proteins, JCAMD (1996) 10, 41--54
REMARK
REMARK   Matthias Rarey, Bernd Kramer, Thomas Lengauer and Gerhard Klebe: 
REMARK   A Fast Flexible Docking Method using an Incremental Construction 
REMARK   Algorithm, JMB (1996) 261, 470--489
REMARK ===================================================================
MODEL     3 CONFIDENCE 0.2
ATOM      1 N12  INH     1      45.295  24.382  55.434                
ATOM      2 C13  INH     1      45.967  23.276  54.746                
ATOM      3 C30  INH     1      45.251  23.107  53.384                
ATOM      4 C14  INH     1      47.423  23.613  54.543                
ATOM      5 O17  INH     1      48.031  24.291  55.357                
ATOM      6 O15  INH     1      47.974  23.115  53.425                
ATOM      7 C16  INH     1      49.365  23.448  53.251                
ATOM      8 C21  INH     1      45.303  21.674  52.881                
ATOM      9 C22  INH     1      44.699  21.335  51.649                
ATOM     10 C23  INH     1      44.747  20.006  51.183                
ATOM     11 C24  INH     1      45.397  19.013  51.945                
ATOM     12 C25  INH     1      46.001  19.350  53.174                
ATOM     13 C26  INH     1      45.954  20.679  53.643                
ATOM     14 C27  INH     1      46.702  18.279  53.994                
ATOM     15 N28  INH     1      46.745  17.045  53.558                
ATOM     16 N29  INH     1      47.250  18.615  55.135                
ATOM     17 C11  INH     1      45.627  24.825  56.622                
ATOM     18 C10  INH     1      44.636  25.443  57.580                
ATOM     19 N9   INH     1      43.318  24.865  57.367                
ATOM     20 O20  INH     1      46.785  24.755  57.005                
ATOM     21 C1   INH     1      40.943  24.487  63.561                
ATOM     22 C2   INH     1      41.200  24.810  62.098                
ATOM     23 C3   INH     1      40.840  26.071  61.581                
ATOM     24 C4   INH     1      41.078  26.373  60.224                
ATOM     25 C5   INH     1      41.678  25.410  59.382                
ATOM     26 C6   INH     1      42.039  24.146  59.902                
ATOM     27 C7   INH     1      41.799  23.848  61.259                
ATOM     28 S8   INH     1      41.979  25.785  57.674                
ATOM     29 O18  INH     1      42.350  27.180  57.542                
ATOM     30 O19  INH     1      40.874  25.267  56.892                
TER      31      INH     1
ENDMDL
