

PFRMAT DKF1
TARGET T0040
AUTHOR 6682-2204-3506 Bernd Kramer, GMD-SCAI, Bernd.Kramer@gmd.de
AUTHOR 6682-2204-3506 Thomas Lengauer, GMD-SCAI, Lengauer@gmd.de
AUTHOR 6682-2204-3506 Matthias Rarey, GMD-SCAI, Rarey@gmd.de
REMARK ===================================================================
REMARK 1.Preparation of input data
REMARK   The ligand is generated and energy minimized to fall in an 
REMARK   arbitrary low-energy conformation. Favorable torsion angles at 
REMARK   rotatable bonds, interaction types, and interaction geometries 
REMARK   are automatically assigned.
REMARK   The active site of the protein is selected manually by comparing
REMARK   the protein structure to complexes where the same protein is
REMARK   involved (typically 8-10 A around the ligand). Hydrogens at
REMARK   hydrogen bond donors and acceptors are added in standard 
REMARK   geometries automatically. Interaction types and interaction 
REMARK   geometries are also assigned automatically.
REMARK 2.Docking
REMARK   Complexes are generated using our docking software FlexX (see
REMARK   Ref.). FlexX is a docking tool based on an incremental 
REMARK   construction algorithm producing results in approximately
REMARK   1-3 minutes for one pair of a receptor and a ligand molecule. 
REMARK   No refinement of the produced structures is performed.
REMARK 3.Selection of models
REMARK   The selection of a set of models and the assignment of 
REMARK   confidences is done manually again. Here we have considered
REMARK   phenomena like intramolecular hydrogen bonds which are not 
REMARK   modeled yet. FlexX' energy predictions for the different models
REMARK   are used as a guideline for the selection.
REMARK ===================================================================
REMARK References: 
REMARK   Matthias Rarey, Stephan Wefing and Thomas Lengauer:
REMARK   Placement of medium-sized molecular fragments into active sites
REMARK   of proteins, JCAMD (1996) 10, 41--54
REMARK
REMARK   Matthias Rarey, Bernd Kramer, Thomas Lengauer and Gerhard Klebe: 
REMARK   A Fast Flexible Docking Method using an Incremental Construction 
REMARK   Algorithm, JMB (1996) 261, 470--489
REMARK ===================================================================
MODEL     4 CONFIDENCE 0.2
ATOM      1 N12  INH     1      44.814  24.433  55.283                
ATOM      2 C13  INH     1      45.583  23.358  54.652                
ATOM      3 C30  INH     1      44.981  23.158  53.240                
ATOM      4 C14  INH     1      47.035  23.758  54.559                
ATOM      5 O17  INH     1      47.548  24.462  55.414                
ATOM      6 O15  INH     1      47.690  23.284  53.489                
ATOM      7 C16  INH     1      49.074  23.678  53.420                
ATOM      8 C21  INH     1      45.133  21.728  52.748                
ATOM      9 C22  INH     1      44.640  21.363  51.475                
ATOM     10 C23  INH     1      44.781  20.036  51.018                
ATOM     11 C24  INH     1      45.414  19.073  51.831                
ATOM     12 C25  INH     1      45.907  19.436  53.101                
ATOM     13 C26  INH     1      45.768  20.762  53.561                
ATOM     14 C27  INH     1      46.590  18.397  53.975                
ATOM     15 N28  INH     1      46.720  17.166  53.549                
ATOM     16 N29  INH     1      47.035  18.757  55.154                
ATOM     17 C11  INH     1      45.035  24.890  56.491                
ATOM     18 C10  INH     1      43.948  25.465  57.369                
ATOM     19 N9   INH     1      42.924  24.459  57.609                
ATOM     20 O20  INH     1      46.162  24.871  56.961                
ATOM     21 C1   INH     1      37.707  26.989  54.364                
ATOM     22 C2   INH     1      38.679  26.456  55.404                
ATOM     23 C3   INH     1      38.329  25.339  56.189                
ATOM     24 C4   INH     1      39.230  24.844  57.154                
ATOM     25 C5   INH     1      40.484  25.468  57.334                
ATOM     26 C6   INH     1      40.833  26.588  56.547                
ATOM     27 C7   INH     1      39.930  27.081  55.583                
ATOM     28 S8   INH     1      41.620  24.848  58.548                
ATOM     29 O18  INH     1      41.098  23.624  59.122                
ATOM     30 O19  INH     1      41.993  25.941  59.424                
TER      31      INH     1
ENDMDL
