

PFRMAT DKF1
TARGET T0041
AUTHOR 6682-2204-3506 Bernd Kramer, GMD-SCAI, Bernd.Kramer@gmd.de
AUTHOR 6682-2204-3506 Thomas Lengauer, GMD-SCAI, Lengauer@gmd.de
AUTHOR 6682-2204-3506 Matthias Rarey, GMD-SCAI, Rarey@gmd.de
REMARK ===================================================================
REMARK 1.Preparation of input data
REMARK   The ligand is generated and energy minimized to fall in an 
REMARK   arbitrary low-energy conformation. Favorable torsion angles at 
REMARK   rotatable bonds, interaction types, and interaction geometries 
REMARK   are automatically assigned.
REMARK   The active site of the protein is selected manually by comparing
REMARK   the protein structure to complexes where the same protein is
REMARK   involved (typically 8-10 A around the ligand). Hydrogens at
REMARK   hydrogen bond donors and acceptors are added in standard 
REMARK   geometries automatically. Interaction types and interaction 
REMARK   geometries are also assigned automatically.
REMARK 2.Docking
REMARK   Complexes are generated using our docking software FlexX (see
REMARK   Ref.). FlexX is a docking tool based on an incremental 
REMARK   construction algorithm producing results in approximately
REMARK   1-3 minutes for one pair of a receptor and a ligand molecule. 
REMARK   No refinement of the produced structures is performed.
REMARK 3.Selection of models
REMARK   The selection of a set of models and the assignment of 
REMARK   confidences is done manually again. Here we have considered
REMARK   phenomena like intramolecular hydrogen bonds which are not 
REMARK   modeled yet. FlexX' energy predictions for the different models
REMARK   are used as a guideline for the selection.
REMARK ===================================================================
REMARK References: 
REMARK   Matthias Rarey, Stephan Wefing and Thomas Lengauer:
REMARK   Placement of medium-sized molecular fragments into active sites
REMARK   of proteins, JCAMD (1996) 10, 41--54
REMARK
REMARK   Matthias Rarey, Bernd Kramer, Thomas Lengauer and Gerhard Klebe: 
REMARK   A Fast Flexible Docking Method using an Incremental Construction 
REMARK   Algorithm, JMB (1996) 261, 470--489
REMARK ===================================================================
MODEL     1 CONFIDENCE 0.5
ATOM      1 N12  INI     1       0.221  19.185  18.505                
ATOM      2 C13  INI     1      -0.789  18.950  17.474                
ATOM      3 C30  INI     1      -2.032  18.281  18.118                
ATOM      4 C14  INI     1      -1.101  20.256  16.787                
ATOM      5 O17  INI     1      -1.423  20.308  15.610                
ATOM      6 O25  INI     1      -0.996  21.327  17.588                
ATOM      7 C16  INI     1      -1.288  22.596  16.965                
ATOM      8 C34  INI     1      -1.096  23.679  18.058                
ATOM      9 C35  INI     1      -0.327  22.871  15.775                
ATOM     10 C21  INI     1      -1.876  16.769  18.121                
ATOM     11 C22  INI     1      -1.267  16.121  19.219                
ATOM     12 C23  INI     1      -1.123  14.719  19.219                
ATOM     13 C24  INI     1      -1.588  13.962  18.124                
ATOM     14 C25  INI     1      -2.196  14.606  17.027                
ATOM     15 C26  INI     1      -2.341  16.009  17.024                
ATOM     16 C27  INI     1      -2.697  13.789  15.848                
ATOM     17 N28  INI     1      -2.558  12.488  15.859                
ATOM     18 N29  INI     1      -3.258  14.402  14.838                
ATOM     19 C11  INI     1       1.499  19.095  18.242                
ATOM     20 C10  INI     1       2.492  19.349  19.351                
ATOM     21 N9   INI     1       2.282  18.399  20.435                
ATOM     22 O20  INI     1       1.929  18.800  17.138                
ATOM     23 C1   INI     1       3.832  23.731  23.826                
ATOM     24 C33  INI     1       5.444  21.787  22.631                
ATOM     25 C32  INI     1       6.043  22.940  23.134                
ATOM     26 C31  INI     1       5.227  23.920  23.736                
ATOM     27 C2   INI     1       3.236  22.560  23.314                
ATOM     28 C3   INI     1       1.839  22.391  23.414                
ATOM     29 C4   INI     1       1.231  21.225  22.907                
ATOM     30 C5   INI     1       2.021  20.225  22.297                
ATOM     31 C6   INI     1       3.420  20.395  22.197                
ATOM     32 C7   INI     1       4.026  21.563  22.706                
ATOM     33 S8   INI     1       1.258  18.753  21.655                
ATOM     34 O18  INI     1       1.346  17.710  22.659                
ATOM     35 O19  INI     1      -0.034  19.091  21.089                
TER      36      INI     1
ENDMDL
