REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0045AL215_1_3 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : ZHU-JUN 
REMARK  ---------------------------------------------------------- 
TARGET     T0045  
AUTHOR     4070-8855-4894  
METHOD     The target is compared with PDB25 database (U.Hobohm et al., 1992).  
METHOD     For each structure in PDB25, a model is built in the following way:  
METHOD     the sequence (query) is compared with NR database using transitive   
METHOD     BLAST (Neuwald et al. 1997). Similar sequences are collected and   
METHOD     purged at score 150.  Those sequences are aligned with query   
METHOD     sequence using Bayesian aligner (Zhu et al., 1998) and a   
METHOD     profile-like model is built (Lawrence et al. 1993; Gribskov et al.,  
METHOD     1987; unpublished result by Jun Zhu, Roland Luthy and Charlse E.   
METHOD     Lawrence).  Then, the target file is compared with the models   
METHOD     derived from PDB25.  
MODEL     1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1ber_A 
ATOM      1  N   TYR   127      11.743  52.894  -7.172  1.00  0.00              
ATOM      2  CA  TYR   127      11.108  53.607  -8.278  1.00  0.00              
ATOM      3  C   TYR   127      11.312  52.905  -9.594  1.00  0.00              
ATOM      4  O   TYR   127      11.794  53.532 -10.532  1.00  0.00              
ATOM      5  N   VAL   128      10.932  51.633  -9.698  1.00  0.00              
ATOM      6  CA  VAL   128      11.144  50.906 -10.952  1.00  0.00              
ATOM      7  C   VAL   128       9.897  50.144 -11.417  1.00  0.00              
ATOM      8  O   VAL   128       9.431  49.203 -10.750  1.00  0.00              
ATOM      9  N   SER   129       9.358  50.572 -12.569  1.00  0.00              
ATOM     10  CA  SER   129       8.133  50.009 -13.170  1.00  0.00              
ATOM     11  C   SER   129       8.401  48.578 -13.624  1.00  0.00              
ATOM     12  O   SER   129       9.527  48.197 -13.989  1.00  0.00              
ATOM     13  N   GLY   130       7.368  47.763 -13.602  1.00  0.00              
ATOM     14  CA  GLY   130       7.580  46.393 -14.006  1.00  0.00              
ATOM     15  C   GLY   130       7.528  46.378 -15.523  1.00  0.00              
ATOM     16  O   GLY   130       6.862  47.235 -16.122  1.00  0.00              
ATOM     17  N   GLY   131       8.253  45.437 -16.127  1.00  0.00              
ATOM     18  CA  GLY   131       8.304  45.249 -17.589  1.00  0.00              
ATOM     19  C   GLY   131       8.278  43.738 -17.818  1.00  0.00              
ATOM     20  O   GLY   131       8.929  43.018 -17.059  1.00  0.00              
ATOM     21  N   LYS   132       7.556  43.235 -18.860  1.00  0.00              
ATOM     22  CA  LYS   132       7.371  41.790 -19.096  1.00  0.00              
ATOM     23  C   LYS   132       8.668  41.047 -18.814  1.00  0.00              
ATOM     24  O   LYS   132       8.765  40.152 -17.962  1.00  0.00              
ATOM     25  N   ARG   133       9.671  41.470 -19.554  1.00  0.00              
ATOM     26  CA  ARG   133      11.005  40.991 -19.361  1.00  0.00              
ATOM     27  C   ARG   133      11.787  42.201 -18.837  1.00  0.00              
ATOM     28  O   ARG   133      11.593  43.309 -19.356  1.00  0.00              
ATOM     29  N   GLY   134      12.581  41.987 -17.778  1.00  0.00              
ATOM     30  CA  GLY   134      13.418  43.000 -17.144  1.00  0.00              
ATOM     31  C   GLY   134      12.679  44.103 -16.395  1.00  0.00              
ATOM     32  O   GLY   134      11.441  44.187 -16.350  1.00  0.00              
ATOM     33  N   LEU   135      13.472  44.972 -15.776  1.00  0.00              
ATOM     34  CA  LEU   135      12.937  46.121 -15.049  1.00  0.00              
ATOM     35  C   LEU   135      13.191  47.389 -15.817  1.00  0.00              
ATOM     36  O   LEU   135      14.298  47.638 -16.326  1.00  0.00              
ATOM     37  N   SER   136      12.135  48.191 -15.877  1.00  0.00              
ATOM     38  CA  SER   136      12.163  49.466 -16.548  1.00  0.00              
ATOM     39  C   SER   136      12.568  50.514 -15.541  1.00  0.00              
ATOM     40  O   SER   136      11.862  50.836 -14.598  1.00  0.00              
ATOM     41  N   VAL   137      13.817  50.891 -15.707  1.00  0.00              
ATOM     42  CA  VAL   137      14.460  51.984 -15.027  1.00  0.00              
ATOM     43  C   VAL   137      14.209  53.253 -15.814  1.00  0.00              
ATOM     44  O   VAL   137      14.069  53.159 -17.027  1.00  0.00              
ATOM     45  N   GLU   138      14.064  54.407 -15.200  1.00  0.00              
ATOM     46  CA  GLU   138      13.856  55.574 -16.030  1.00  0.00              
ATOM     47  C   GLU   138      14.990  56.446 -15.713  1.00  0.00              
ATOM     48  O   GLU   138      15.130  56.806 -14.551  1.00  0.00              
ATOM     49  N   ILE   139      15.814  56.785 -16.694  1.00  0.00              
ATOM     50  CA  ILE   139      16.939  57.579 -16.312  1.00  0.00              
ATOM     51  C   ILE   139      17.691  58.175 -17.487  1.00  0.00              
ATOM     52  O   ILE   139      17.674  57.689 -18.616  1.00  0.00              
ATOM     53  N   ALA   140      18.331  59.265 -17.107  1.00  0.00              
ATOM     54  CA  ALA   140      19.185  60.155 -17.833  1.00  0.00              
ATOM     55  C   ALA   140      20.614  59.707 -17.835  1.00  0.00              
ATOM     56  O   ALA   140      21.246  59.703 -16.796  1.00  0.00              
ATOM     57  N   PRO   141      21.141  59.389 -19.008  1.00  0.00              
ATOM     58  CA  PRO   141      22.540  59.005 -19.140  1.00  0.00              
ATOM     59  C   PRO   141      23.434  60.011 -18.443  1.00  0.00              
ATOM     60  O   PRO   141      24.587  59.706 -18.117  1.00  0.00              
ATOM     61  N   GLN   142      22.950  61.232 -18.271  1.00  0.00              
ATOM     62  CA  GLN   142      23.787  62.216 -17.617  1.00  0.00              
ATOM     63  C   GLN   142      23.887  61.825 -16.170  1.00  0.00              
ATOM     64  O   GLN   142      24.968  61.869 -15.605  1.00  0.00              
ATOM     65  N   ASP   143      22.761  61.372 -15.622  1.00  0.00              
ATOM     66  CA  ASP   143      22.693  60.893 -14.221  1.00  0.00              
ATOM     67  C   ASP   143      23.642  59.718 -13.941  1.00  0.00              
ATOM     68  O   ASP   143      24.474  59.795 -13.012  1.00  0.00              
ATOM     69  N   LEU   144      23.545  58.663 -14.761  1.00  0.00              
ATOM     70  CA  LEU   144      24.439  57.511 -14.631  1.00  0.00              
ATOM     71  C   LEU   144      25.876  58.025 -14.643  1.00  0.00              
ATOM     72  O   LEU   144      26.688  57.567 -13.846  1.00  0.00              
ATOM     73  N   ALA   145      26.196  58.987 -15.510  1.00  0.00              
ATOM     74  CA  ALA   145      27.541  59.524 -15.515  1.00  0.00              
ATOM     75  C   ALA   145      27.888  60.109 -14.136  1.00  0.00              
ATOM     76  O   ALA   145      29.047  60.044 -13.711  1.00  0.00              
ATOM     77  N   LYS   146      26.907  60.666 -13.418  1.00  0.00              
ATOM     78  CA  LYS   146      27.147  61.287 -12.097  1.00  0.00              
ATOM     79  C   LYS   146      27.317  60.271 -10.966  1.00  0.00              
ATOM     80  O   LYS   146      28.267  60.352 -10.178  1.00  0.00              
ATOM     81  N   VAL   147      26.350  59.371 -10.883  1.00  0.00              
ATOM     82  CA  VAL   147      26.363  58.226 -10.007  1.00  0.00              
ATOM     83  C   VAL   147      27.693  57.493 -10.048  1.00  0.00              
ATOM     84  O   VAL   147      28.284  57.182  -9.018  1.00  0.00              
ATOM     85  N   LEU   148      28.158  57.244 -11.274  1.00  0.00              
ATOM     86  CA  LEU   148      29.333  56.405 -11.608  1.00  0.00              
ATOM     87  C   LEU   148      30.667  57.046 -11.707  1.00  0.00              
ATOM     88  O   LEU   148      31.679  56.356 -11.648  1.00  0.00              
ATOM     89  N   GLY   149      30.711  58.337 -11.921  1.00  0.00              
ATOM     90  CA  GLY   149      32.028  58.929 -12.011  1.00  0.00              
ATOM     91  C   GLY   149      32.599  58.900 -13.408  1.00  0.00              
ATOM     92  O   GLY   149      33.790  58.760 -13.603  1.00  0.00              
ATOM     93  N   ALA   150      31.772  59.020 -14.412  1.00  0.00              
ATOM     94  CA  ALA   150      32.358  59.093 -15.751  1.00  0.00              
ATOM     95  C   ALA   150      31.576  60.203 -16.464  1.00  0.00              
ATOM     96  O   ALA   150      30.608  60.673 -15.900  1.00  0.00              
ATOM     97  N   GLU   151      32.003  60.628 -17.648  1.00  0.00              
ATOM     98  CA  GLU   151      31.352  61.671 -18.396  1.00  0.00              
ATOM     99  C   GLU   151      30.185  61.112 -19.151  1.00  0.00              
ATOM    100  O   GLU   151      30.175  59.918 -19.426  1.00  0.00              
ATOM    101  N   PHE   152      29.269  61.998 -19.557  1.00  0.00              
ATOM    102  CA  PHE   152      28.047  61.669 -20.303  1.00  0.00              
ATOM    103  C   PHE   152      28.262  60.753 -21.518  1.00  0.00              
ATOM    104  O   PHE   152      27.488  59.826 -21.723  1.00  0.00              
ATOM    105  N   THR   153      29.302  61.006 -22.316  1.00  0.00              
ATOM    106  CA  THR   153      29.468  60.245 -23.554  1.00  0.00              
ATOM    107  C   THR   153      29.836  58.822 -23.324  1.00  0.00              
ATOM    108  O   THR   153      29.337  57.940 -24.058  1.00  0.00              
END
