REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0046AL166_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : SB-FOLD 
REMARK  ---------------------------------------------------------- 
TARGET T0046  
AUTHOR 7397-8542-2481  
METHOD Homologs of the gamma adaptin ear domain were identified in the nr   
METHOD database using PSI-BLAST, and the sequences were aligned in MACAW.  
METHOD The alignment was submitted to the JPRED server and eight beta strands  
METHOD were predicted. The prediction was used to derive a pattern for the   
METHOD MAP program.  Searches found numerous Immunoglobulin-type beta   
METHOD sandwiches in the top scoring hits,  and accounted for all of the   
METHOD predicted beta strands.  An initial alignment was performed using  
METHOD MAP and a BLOSUM62 matrix (where predicted strands were required to   
METHOD align to the strands matched using MAP).  This alignment was  
METHOD refined by eye after considering all predictions returned from JPRED,  
METHOD then homologues of gamma-adaptin and homologues of the top scoring  
METHOD Ig-type fold (1cid C2 domain from CD4) that were aligned using the   
METHOD STAMP structure comparison algorithm.  
MODEL  1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1cid 
ATOM      1  N   ILE     1     -12.364  37.777  30.146  1.00  0.00              
ATOM      2  CA  ILE     1     -11.496  38.124  31.239  1.00  0.00              
ATOM      3  C   ILE     1     -12.224  39.058  32.198  1.00  0.00              
ATOM      4  O   ILE     1     -12.493  40.146  31.683  1.00  0.00              
ATOM      5  N   PRO     2     -12.375  38.428  33.417  1.00  0.00              
ATOM      6  CA  PRO     2     -12.990  39.287  34.476  1.00  0.00              
ATOM      7  C   PRO     2     -11.827  39.564  35.486  1.00  0.00              
ATOM      8  O   PRO     2     -11.227  38.534  35.789  1.00  0.00              
ATOM      9  N   SER     3     -11.616  40.819  35.868  1.00  0.00              
ATOM     10  CA  SER     3     -10.668  41.470  36.736  1.00  0.00              
ATOM     11  C   SER     3     -11.211  42.140  38.024  1.00  0.00              
ATOM     12  O   SER     3     -12.094  42.969  38.035  1.00  0.00              
ATOM     13  N   ILE     4     -10.539  41.822  39.123  1.00  0.00              
ATOM     14  CA  ILE     4     -10.820  42.282  40.479  1.00  0.00              
ATOM     15  C   ILE     4      -9.731  43.229  40.979  1.00  0.00              
ATOM     16  O   ILE     4      -8.551  42.902  40.749  1.00  0.00              
ATOM     17  N   THR     5     -10.211  44.244  41.640  1.00  0.00              
ATOM     18  CA  THR     5      -9.270  45.225  42.248  1.00  0.00              
ATOM     19  C   THR     5      -9.670  45.604  43.699  1.00  0.00              
ATOM     20  O   THR     5     -10.710  46.289  43.893  1.00  0.00              
ATOM     21  N   ALA     6      -8.833  45.177  44.657  1.00  0.00              
ATOM     22  CA  ALA     6      -9.065  45.423  46.086  1.00  0.00              
ATOM     23  C   ALA     6      -8.120  46.568  46.514  1.00  0.00              
ATOM     24  O   ALA     6      -6.938  46.315  46.275  1.00  0.00              
ATOM     25  N   TYR     7      -8.698  47.591  47.089  1.00  0.00              
ATOM     26  CA  TYR     7      -8.010  48.719  47.637  1.00  0.00              
ATOM     27  C   TYR     7      -8.654  49.249  48.929  1.00  0.00              
ATOM     28  O   TYR     7      -9.807  49.115  49.260  1.00  0.00              
ATOM     29  N   SER     8      -7.793  49.883  49.669  1.00  0.00              
ATOM     30  CA  SER     8      -7.876  50.626  50.911  1.00  0.00              
ATOM     31  C   SER     8      -7.468  52.057  50.487  1.00  0.00              
ATOM     32  O   SER     8      -6.272  52.437  50.458  1.00  0.00              
ATOM     33  N   LYS     9      -8.632  55.309  55.298  1.00  0.00              
ATOM     34  CA  LYS     9      -8.744  54.082  56.169  1.00  0.00              
ATOM     35  C   LYS     9     -10.152  53.941  56.762  1.00  0.00              
ATOM     36  O   LYS     9     -10.426  53.328  57.802  1.00  0.00              
ATOM     37  N   ASN    10     -11.020  54.564  56.000  1.00  0.00              
ATOM     38  CA  ASN    10     -12.459  54.552  56.238  1.00  0.00              
ATOM     39  C   ASN    10     -12.891  53.634  55.068  1.00  0.00              
ATOM     40  O   ASN    10     -13.932  52.978  55.242  1.00  0.00              
ATOM     41  N   GLY    11     -12.012  53.696  54.054  1.00  0.00              
ATOM     42  CA  GLY    11     -12.425  52.858  52.939  1.00  0.00              
ATOM     43  C   GLY    11     -11.613  51.622  52.699  1.00  0.00              
ATOM     44  O   GLY    11     -10.402  51.696  52.906  1.00  0.00              
ATOM     45  N   LEU    12     -12.261  50.561  52.271  1.00  0.00              
ATOM     46  CA  LEU    12     -11.797  49.249  51.835  1.00  0.00              
ATOM     47  C   LEU    12     -12.728  49.014  50.587  1.00  0.00              
ATOM     48  O   LEU    12     -13.904  49.122  50.937  1.00  0.00              
ATOM     49  N   LYS    13     -12.188  48.796  49.403  1.00  0.00              
ATOM     50  CA  LYS    13     -13.088  48.650  48.280  1.00  0.00              
ATOM     51  C   LYS    13     -12.856  47.415  47.431  1.00  0.00              
ATOM     52  O   LYS    13     -11.692  46.981  47.387  1.00  0.00              
ATOM     53  N   ILE    14     -13.862  46.880  46.785  1.00  0.00              
ATOM     54  CA  ILE    14     -13.469  45.744  45.956  1.00  0.00              
ATOM     55  C   ILE    14     -14.281  45.964  44.717  1.00  0.00              
ATOM     56  O   ILE    14     -15.445  46.227  45.025  1.00  0.00              
ATOM     57  N   GLU    15     -13.665  46.002  43.529  1.00  0.00              
ATOM     58  CA  GLU    15     -14.470  46.164  42.332  1.00  0.00              
ATOM     59  C   GLU    15     -13.900  45.167  41.305  1.00  0.00              
ATOM     60  O   GLU    15     -12.710  44.863  41.324  1.00  0.00              
ATOM     61  N   PHE    16     -14.889  44.759  40.533  1.00  0.00              
ATOM     62  CA  PHE    16     -14.630  43.768  39.453  1.00  0.00              
ATOM     63  C   PHE    16     -15.096  44.297  38.095  1.00  0.00              
ATOM     64  O   PHE    16     -16.043  45.135  38.008  1.00  0.00              
ATOM     65  N   THR    17     -14.528  43.890  36.987  1.00  0.00              
ATOM     66  CA  THR    17     -15.015  44.405  35.696  1.00  0.00              
ATOM     67  C   THR    17     -14.956  43.339  34.627  1.00  0.00              
ATOM     68  O   THR    17     -13.991  42.564  34.655  1.00  0.00              
ATOM     69  N   PHE    18     -15.937  43.350  33.761  1.00  0.00              
ATOM     70  CA  PHE    18     -15.858  42.290  32.703  1.00  0.00              
ATOM     71  C   PHE    18     -17.156  41.523  32.846  1.00  0.00              
ATOM     72  O   PHE    18     -17.991  41.861  33.696  1.00  0.00              
ATOM     73  N   GLU    19     -17.286  40.491  32.046  1.00  0.00              
ATOM     74  CA  GLU    19     -18.451  39.598  31.971  1.00  0.00              
ATOM     75  C   GLU    19     -18.865  38.684  33.126  1.00  0.00              
ATOM     76  O   GLU    19     -18.505  37.471  33.308  1.00  0.00              
ATOM     77  N   SER    26     -26.259  36.349  38.881  1.00  0.00              
ATOM     78  CA  SER    26     -26.310  35.368  39.973  1.00  0.00              
ATOM     79  C   SER    26     -24.799  35.248  40.377  1.00  0.00              
ATOM     80  O   SER    26     -24.091  34.207  40.457  1.00  0.00              
ATOM     81  N   VAL    27     -24.207  36.433  40.552  1.00  0.00              
ATOM     82  CA  VAL    27     -22.802  36.718  40.903  1.00  0.00              
ATOM     83  C   VAL    27     -22.806  37.883  41.936  1.00  0.00              
ATOM     84  O   VAL    27     -23.443  38.922  41.608  1.00  0.00              
ATOM     85  N   THR    28     -22.154  37.605  43.085  1.00  0.00              
ATOM     86  CA  THR    28     -22.141  38.679  44.097  1.00  0.00              
ATOM     87  C   THR    28     -20.723  38.849  44.596  1.00  0.00              
ATOM     88  O   THR    28     -20.011  37.873  44.384  1.00  0.00              
ATOM     89  N   VAL    29     -20.465  39.991  45.127  1.00  0.00              
ATOM     90  CA  VAL    29     -19.157  40.338  45.664  1.00  0.00              
ATOM     91  C   VAL    29     -19.286  40.334  47.209  1.00  0.00              
ATOM     92  O   VAL    29     -20.328  40.697  47.795  1.00  0.00              
ATOM     93  N   ILE    30     -18.197  39.889  47.778  1.00  0.00              
ATOM     94  CA  ILE    30     -18.132  39.668  49.207  1.00  0.00              
ATOM     95  C   ILE    30     -16.820  40.140  49.778  1.00  0.00              
ATOM     96  O   ILE    30     -15.773  39.704  49.296  1.00  0.00              
ATOM     97  N   THR    31     -16.890  40.940  50.801  1.00  0.00              
ATOM     98  CA  THR    31     -15.753  41.462  51.577  1.00  0.00              
ATOM     99  C   THR    31     -15.938  40.768  52.940  1.00  0.00              
ATOM    100  O   THR    31     -17.001  40.857  53.526  1.00  0.00              
ATOM    101  N   ILE    32     -15.053  39.976  53.435  1.00  0.00              
ATOM    102  CA  ILE    32     -14.921  39.170  54.590  1.00  0.00              
ATOM    103  C   ILE    32     -13.586  39.445  55.299  1.00  0.00              
ATOM    104  O   ILE    32     -12.652  40.014  54.716  1.00  0.00              
ATOM    105  N   GLN    33     -13.532  38.971  56.538  1.00  0.00              
ATOM    106  CA  GLN    33     -12.254  39.181  57.293  1.00  0.00              
ATOM    107  C   GLN    33     -11.481  37.916  56.963  1.00  0.00              
ATOM    108  O   GLN    33     -12.228  36.926  56.865  1.00  0.00              
ATOM    109  N   ASP    44     -18.905  36.456  55.906  1.00  0.00              
ATOM    110  CA  ASP    44     -19.021  37.619  54.998  1.00  0.00              
ATOM    111  C   ASP    44     -19.519  38.792  55.730  1.00  0.00              
ATOM    112  O   ASP    44     -20.606  38.666  56.274  1.00  0.00              
ATOM    113  N   PHE    45     -18.875  39.895  55.681  1.00  0.00              
ATOM    114  CA  PHE    45     -19.369  41.169  56.316  1.00  0.00              
ATOM    115  C   PHE    45     -20.369  41.797  55.381  1.00  0.00              
ATOM    116  O   PHE    45     -21.534  41.891  55.750  1.00  0.00              
ATOM    117  N   VAL    46     -20.084  42.124  54.166  1.00  0.00              
ATOM    118  CA  VAL    46     -20.868  42.625  53.046  1.00  0.00              
ATOM    119  C   VAL    46     -21.023  41.540  51.983  1.00  0.00              
ATOM    120  O   VAL    46     -19.982  40.916  51.772  1.00  0.00              
ATOM    121  N   PHE    47     -22.128  41.350  51.361  1.00  0.00              
ATOM    122  CA  PHE    47     -22.316  40.355  50.283  1.00  0.00              
ATOM    123  C   PHE    47     -23.362  41.112  49.477  1.00  0.00              
ATOM    124  O   PHE    47     -24.538  41.048  49.729  1.00  0.00              
ATOM    125  N   GLN    48     -22.870  41.916  48.581  1.00  0.00              
ATOM    126  CA  GLN    48     -23.794  42.734  47.731  1.00  0.00              
ATOM    127  C   GLN    48     -23.751  42.107  46.337  1.00  0.00              
ATOM    128  O   GLN    48     -22.753  41.484  45.896  1.00  0.00              
ATOM    129  N   ALA    49     -24.871  42.291  45.692  1.00  0.00              
ATOM    130  CA  ALA    49     -24.977  41.761  44.308  1.00  0.00              
ATOM    131  C   ALA    49     -24.846  42.841  43.230  1.00  0.00              
ATOM    132  O   ALA    49     -25.674  43.141  42.352  1.00  0.00              
ATOM    133  N   LYS    53     -21.157  45.309  41.497  1.00  0.00              
ATOM    134  CA  LYS    53     -19.811  45.183  40.918  1.00  0.00              
ATOM    135  C   LYS    53     -18.806  45.999  41.692  1.00  0.00              
ATOM    136  O   LYS    53     -17.587  45.887  41.425  1.00  0.00              
ATOM    137  N   THR    54     -19.302  46.781  42.626  1.00  0.00              
ATOM    138  CA  THR    54     -18.324  47.422  43.498  1.00  0.00              
ATOM    139  C   THR    54     -18.943  47.501  44.898  1.00  0.00              
ATOM    140  O   THR    54     -19.962  48.199  45.043  1.00  0.00              
ATOM    141  N   PHE    55     -18.364  46.753  45.849  1.00  0.00              
ATOM    142  CA  PHE    55     -18.847  46.873  47.221  1.00  0.00              
ATOM    143  C   PHE    55     -17.799  47.629  48.027  1.00  0.00              
ATOM    144  O   PHE    55     -16.672  47.532  47.588  1.00  0.00              
ATOM    145  N   GLN    56     -18.233  48.225  49.095  1.00  0.00              
ATOM    146  CA  GLN    56     -17.348  49.076  49.918  1.00  0.00              
ATOM    147  C   GLN    56     -17.510  48.734  51.378  1.00  0.00              
ATOM    148  O   GLN    56     -18.605  48.235  51.649  1.00  0.00              
ATOM    149  N   LEU    57     -16.543  48.931  52.247  1.00  0.00              
ATOM    150  CA  LEU    57     -16.634  48.665  53.680  1.00  0.00              
ATOM    151  C   LEU    57     -15.996  49.876  54.411  1.00  0.00              
ATOM    152  O   LEU    57     -14.882  50.329  54.228  1.00  0.00              
ATOM    153  N   GLN    58     -16.898  50.276  55.293  1.00  0.00              
ATOM    154  CA  GLN    58     -16.647  51.391  56.209  1.00  0.00              
ATOM    155  C   GLN    58     -15.854  50.915  57.440  1.00  0.00              
ATOM    156  O   GLN    58     -16.081  49.918  58.181  1.00  0.00              
ATOM    157  N   LEU    59     -14.823  51.752  57.530  1.00  0.00              
ATOM    158  CA  LEU    59     -13.785  51.662  58.536  1.00  0.00              
ATOM    159  C   LEU    59     -13.507  50.217  58.940  1.00  0.00              
ATOM    160  O   LEU    59     -13.823  49.756  60.049  1.00  0.00              
ATOM    161  N   THR    74      -6.367  44.117  59.729  1.00  0.00              
ATOM    162  CA  THR    74      -6.289  42.631  59.485  1.00  0.00              
ATOM    163  C   THR    74      -6.258  42.162  58.020  1.00  0.00              
ATOM    164  O   THR    74      -6.039  43.001  57.108  1.00  0.00              
ATOM    165  N   ILE    75      -6.474  40.882  57.740  1.00  0.00              
ATOM    166  CA  ILE    75      -6.400  40.442  56.355  1.00  0.00              
ATOM    167  C   ILE    75      -7.830  40.495  55.931  1.00  0.00              
ATOM    168  O   ILE    75      -8.499  39.697  56.587  1.00  0.00              
ATOM    169  N   THR    76      -8.172  41.290  54.973  1.00  0.00              
ATOM    170  CA  THR    76      -9.591  41.140  54.544  1.00  0.00              
ATOM    171  C   THR    76      -9.607  40.212  53.327  1.00  0.00              
ATOM    172  O   THR    76      -8.534  40.157  52.716  1.00  0.00              
ATOM    173  N   GLN    77     -10.671  39.615  52.934  1.00  0.00              
ATOM    174  CA  GLN    77     -10.448  38.861  51.664  1.00  0.00              
ATOM    175  C   GLN    77     -11.482  39.365  50.704  1.00  0.00              
ATOM    176  O   GLN    77     -12.490  39.886  51.252  1.00  0.00              
ATOM    177  N   VAL    78     -11.351  39.359  49.378  1.00  0.00              
ATOM    178  CA  VAL    78     -12.540  39.805  48.585  1.00  0.00              
ATOM    179  C   VAL    78     -12.948  38.639  47.682  1.00  0.00              
ATOM    180  O   VAL    78     -12.054  37.999  47.066  1.00  0.00              
ATOM    181  N   ILE    79     -14.216  38.245  47.599  1.00  0.00              
ATOM    182  CA  ILE    79     -14.496  37.091  46.709  1.00  0.00              
ATOM    183  C   ILE    79     -15.617  37.414  45.740  1.00  0.00              
ATOM    184  O   ILE    79     -16.454  38.211  46.152  1.00  0.00              
ATOM    185  N   LYS    80     -15.559  36.746  44.618  1.00  0.00              
ATOM    186  CA  LYS    80     -16.519  36.759  43.490  1.00  0.00              
ATOM    187  C   LYS    80     -17.083  35.303  43.479  1.00  0.00              
ATOM    188  O   LYS    80     -16.308  34.325  43.328  1.00  0.00              
ATOM    189  N   VAL    81     -18.379  35.332  43.653  1.00  0.00              
ATOM    190  CA  VAL    81     -19.028  34.026  43.676  1.00  0.00              
ATOM    191  C   VAL    81     -20.272  34.087  42.813  1.00  0.00              
ATOM    192  O   VAL    81     -20.919  35.133  42.732  1.00  0.00              
ATOM    193  N   LEU    82     -20.523  32.947  42.197  1.00  0.00              
ATOM    194  CA  LEU    82     -21.725  32.593  41.408  1.00  0.00              
ATOM    195  C   LEU    82     -22.191  31.240  42.044  1.00  0.00              
ATOM    196  O   LEU    82     -21.411  30.273  42.193  1.00  0.00              
ATOM    197  N   ARG    90     -20.438  28.722  44.100  1.00  0.00              
ATOM    198  CA  ARG    90     -19.157  28.720  43.369  1.00  0.00              
ATOM    199  C   ARG    90     -18.499  30.110  43.393  1.00  0.00              
ATOM    200  O   ARG    90     -18.857  31.240  43.059  1.00  0.00              
ATOM    201  N   MET    91     -17.324  29.840  43.984  1.00  0.00              
ATOM    202  CA  MET    91     -16.485  31.037  44.177  1.00  0.00              
ATOM    203  C   MET    91     -15.565  30.959  42.948  1.00  0.00              
ATOM    204  O   MET    91     -14.896  29.929  42.933  1.00  0.00              
ATOM    205  N   ARG    92     -15.719  32.025  42.197  1.00  0.00              
ATOM    206  CA  ARG    92     -14.924  32.111  40.992  1.00  0.00              
ATOM    207  C   ARG    92     -13.553  32.540  41.298  1.00  0.00              
ATOM    208  O   ARG    92     -12.566  32.172  40.657  1.00  0.00              
ATOM    209  N   ILE    93     -13.407  33.429  42.251  1.00  0.00              
ATOM    210  CA  ILE    93     -12.068  33.954  42.673  1.00  0.00              
ATOM    211  C   ILE    93     -12.150  34.787  43.965  1.00  0.00              
ATOM    212  O   ILE    93     -13.303  35.087  44.338  1.00  0.00              
ATOM    213  N   LYS    94     -10.934  35.044  44.424  1.00  0.00              
ATOM    214  CA  LYS    94     -10.707  35.841  45.637  1.00  0.00              
ATOM    215  C   LYS    94      -9.377  36.603  45.576  1.00  0.00              
ATOM    216  O   LYS    94      -8.471  36.276  44.863  1.00  0.00              
ATOM    217  N   LEU    95      -9.231  37.554  46.421  1.00  0.00              
ATOM    218  CA  LEU    95      -8.047  38.373  46.552  1.00  0.00              
ATOM    219  C   LEU    95      -7.964  38.968  47.972  1.00  0.00              
ATOM    220  O   LEU    95      -9.037  39.381  48.504  1.00  0.00              
ATOM    221  N   THR    96      -6.782  38.993  48.609  1.00  0.00              
ATOM    222  CA  THR    96      -6.510  39.492  49.904  1.00  0.00              
ATOM    223  C   THR    96      -5.636  40.757  49.840  1.00  0.00              
ATOM    224  O   THR    96      -4.768  40.984  49.014  1.00  0.00              
ATOM    225  N   TYR    97      -5.924  41.459  50.895  1.00  0.00              
ATOM    226  CA  TYR    97      -5.369  42.704  51.360  1.00  0.00              
ATOM    227  C   TYR    97      -5.300  42.725  52.917  1.00  0.00              
ATOM    228  O   TYR    97      -6.161  42.286  53.740  1.00  0.00              
ATOM    229  N   ASN    98      -4.128  43.262  53.270  1.00  0.00              
ATOM    230  CA  ASN    98      -3.775  43.539  54.663  1.00  0.00              
ATOM    231  C   ASN    98      -4.158  45.038  54.782  1.00  0.00              
ATOM    232  O   ASN    98      -3.648  45.997  54.101  1.00  0.00              
ATOM    233  N   HIS    99      -5.086  45.258  55.702  1.00  0.00              
ATOM    234  CA  HIS    99      -5.525  46.650  56.016  1.00  0.00              
ATOM    235  C   HIS    99      -4.694  47.017  57.257  1.00  0.00              
ATOM    236  O   HIS    99      -4.757  48.244  57.037  1.00  0.00              
END
