REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0046AL212_4 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : BRYANT 
REMARK  ---------------------------------------------------------- 
TARGET T0046  
REMARK =======================================================================  
AUTHOR 2738-1421-4442  
REMARK This prediction was prepared by Anna Panchenko,  
REMARK Aron Marchler-Bauer, and Steve Bryant, NCBI.   
REMARK =======================================================================  
METHOD Predictions were made with the potential and alignment model used in   
METHOD CASP1 and CASP2 predictions, as described by Madej et al. in Proteins   
METHOD 23:356-369, 1995. Convergence control has been added to the Gibbs-  
METHOD Sampling alignment model. In addition to contact-based threading   
METHOD potentials, PSSMs summarizing sequence conservation in the family   
METHOD represented by the template structure are used to score threading  
METHOD alignments. Threading "cores" summarizing the conserved substructure   
METHOD in the templates used for models below have been based on structure  
METHOD superpositions generated by VAST (Gibrat et al., Curr Opin Struct  
METHOD Biol 1996 Jun;6(3):377-385 ).  
METHOD The alignments have been calculated with the Gibbs Sampling threading  
METHOD engine. Models 1-3 have been calculated with PSSMs and a weight of  
METHOD 0.5. Models 4 and 5 have been calculated using contact-based scoring   
METHOD parameters. The models represent the top scoring hits in database  
METHOD searches with different parameters.  
REMARK =======================================================================  
MODEL  4  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 3dpa 
ATOM      1  CA  SER     3      30.631  22.736  12.709  1.00  0.00              
ATOM      2  CA  ILE     4      30.593  23.611  16.365  1.00  0.00              
ATOM      3  CA  THR     5      31.517  27.233  16.779  1.00  0.00              
ATOM      4  CA  ALA     6      32.213  29.260  20.023  1.00  0.00              
ATOM      5  CA  TYR     7      30.654  32.472  21.233  1.00  0.00              
ATOM      6  CA  SER     8      34.013  34.309  21.338  1.00  0.00              
ATOM      7  CA  ASN    10      37.491  34.673  19.916  1.00  0.00              
ATOM      8  CA  GLY    11      39.689  35.015  23.054  1.00  0.00              
ATOM      9  CA  LEU    12      38.636  34.586  26.690  1.00  0.00              
ATOM     10  CA  LYS    13      39.560  36.164  29.988  1.00  0.00              
ATOM     11  CA  ILE    14      39.086  34.030  33.105  1.00  0.00              
ATOM     12  CA  GLU    15      38.455  36.367  36.029  1.00  0.00              
ATOM     13  CA  PHE    16      40.336  34.931  38.997  1.00  0.00              
ATOM     14  CA  THR    17      37.740  36.439  41.441  1.00  0.00              
ATOM     15  CA  PHE    18      35.300  33.661  40.392  1.00  0.00              
ATOM     16  CA  VAL    27      34.153  29.116  37.173  1.00  0.00              
ATOM     17  CA  THR    28      32.747  30.673  34.094  1.00  0.00              
ATOM     18  CA  VAL    29      31.125  29.198  30.917  1.00  0.00              
ATOM     19  CA  ILE    30      31.588  29.273  27.147  1.00  0.00              
ATOM     20  CA  THR    31      28.612  28.863  24.803  1.00  0.00              
ATOM     21  CA  ILE    32      29.127  26.565  21.775  1.00  0.00              
ATOM     22  CA  GLN    33      26.793  25.610  18.847  1.00  0.00              
ATOM     23  CA  ALA    34      26.424  22.929  16.203  1.00  0.00              
ATOM     24  CA  LEU    40      21.752  18.248   9.658  1.00  0.00              
ATOM     25  CA  ASP    41      24.834  16.319  11.048  1.00  0.00              
ATOM     26  CA  MET    42      25.196  15.695  14.859  1.00  0.00              
ATOM     27  CA  THR    43      28.779  16.313  16.181  1.00  0.00              
ATOM     28  CA  ASP    44      30.783  15.286  19.196  1.00  0.00              
ATOM     29  CA  PHE    45      32.537  18.373  20.684  1.00  0.00              
ATOM     30  CA  VAL    46      35.721  17.839  22.746  1.00  0.00              
ATOM     31  CA  PHE    47      37.069  20.408  25.183  1.00  0.00              
ATOM     32  CA  GLN    48      40.439  20.561  26.807  1.00  0.00              
ATOM     33  CA  ALA    49      42.920  23.042  28.161  1.00  0.00              
ATOM     34  CA  ALA    50      46.628  23.516  27.364  1.00  0.00              
ATOM     35  CA  VAL    51      49.261  25.510  29.031  1.00  0.00              
ATOM     36  CA  THR    54      44.429  17.810  36.047  1.00  0.00              
ATOM     37  CA  PHE    55      44.214  21.616  36.190  1.00  0.00              
ATOM     38  CA  GLN    56      44.840  24.430  37.440  1.00  0.00              
ATOM     39  CA  LEU    57      41.911  25.257  35.005  1.00  0.00              
ATOM     40  CA  GLN    58      39.656  22.406  33.822  1.00  0.00              
ATOM     41  CA  LEU    59      36.919  22.360  31.084  1.00  0.00              
ATOM     42  CA  LEU    60      33.806  20.296  31.746  1.00  0.00              
ATOM     43  CA  SER    65      35.348  16.757  28.097  1.00  0.00              
ATOM     44  CA  VAL    66      32.934  15.433  25.422  1.00  0.00              
ATOM     45  CA  VAL    67      29.319  15.940  24.471  1.00  0.00              
ATOM     46  CA  PRO    68      27.093  15.291  21.389  1.00  0.00              
ATOM     47  CA  ALA    69      25.554  18.440  19.865  1.00  0.00              
ATOM     48  CA  PHE    70      22.448  17.448  17.779  1.00  0.00              
ATOM     49  CA  ASN    71      22.114  19.504  14.488  1.00  0.00              
ATOM     50  CA  THR    74      21.509  23.174  15.512  1.00  0.00              
ATOM     51  CA  ILE    75      21.820  22.622  19.335  1.00  0.00              
ATOM     52  CA  THR    76      23.493  25.193  21.551  1.00  0.00              
ATOM     53  CA  GLN    77      25.332  24.206  24.779  1.00  0.00              
ATOM     54  CA  VAL    78      28.022  25.206  27.267  1.00  0.00              
ATOM     55  CA  ILE    79      31.480  24.183  28.531  1.00  0.00              
ATOM     56  CA  LYS    80      32.263  25.116  32.133  1.00  0.00              
ATOM     57  CA  VAL    81      35.879  26.299  32.944  1.00  0.00              
ATOM     58  CA  LEU    82      36.613  25.810  36.656  1.00  0.00              
ATOM     59  CA  ASN    83      39.894  26.175  38.581  1.00  0.00              
ATOM     60  CA  PRO    84      41.601  23.599  40.904  1.00  0.00              
ATOM     61  CA  LEU    89      48.862  33.533  32.881  1.00  0.00              
ATOM     62  CA  ARG    90      48.103  32.190  29.353  1.00  0.00              
ATOM     63  CA  MET    91      46.293  28.951  28.600  1.00  0.00              
ATOM     64  CA  ARG    92      44.528  27.698  25.438  1.00  0.00              
ATOM     65  CA  ILE    93      40.994  26.411  25.255  1.00  0.00              
ATOM     66  CA  LYS    94      40.557  23.797  22.561  1.00  0.00              
ATOM     67  CA  LEU    95      37.443  22.425  21.061  1.00  0.00              
ATOM     68  CA  THR    96      37.437  19.639  18.381  1.00  0.00              
ATOM     69  CA  TYR    97      34.477  18.344  16.247  1.00  0.00              
ATOM     70  CA  ALA   103      39.694  22.294  15.815  1.00  0.00              
ATOM     71  CA  MET   104      39.127  25.806  17.300  1.00  0.00              
ATOM     72  CA  GLN   105      41.903  27.006  19.596  1.00  0.00              
ATOM     73  CA  ASP   106      41.401  30.327  21.524  1.00  0.00              
ATOM     74  CA  LEU   107      43.545  32.266  24.012  1.00  0.00              
ATOM     75  CA  ALA   108      42.391  32.136  27.678  1.00  0.00              
ATOM     76  CA  GLU   109      43.954  34.838  29.854  1.00  0.00              
ATOM     77  CA  VAL   110      43.793  33.898  33.419  1.00  0.00              
ATOM     78  CA  ASN   111      43.530  37.268  35.121  1.00  0.00              
ATOM     79  CA  ASN   112      43.964  36.894  38.954  1.00  0.00              
ATOM     80  CA  PHE   113      41.720  38.945  41.143  1.00  0.00              
ATOM     81  CA  PRO   114      44.667  41.217  42.443  1.00  0.00              
ATOM     82  CA  PRO   115      45.220  42.745  39.035  1.00  0.00              
ATOM     83  CA  GLN   116      41.476  42.972  38.102  1.00  0.00              
ATOM     84  CA  SER   117      40.815  45.682  35.530  1.00  0.00              
ATOM     85  CA  TRP   118      37.853  47.695  36.678  1.00  0.00              
ATOM     86  CA  GLN   119      35.584  49.534  34.074  1.00  0.00              
END
