REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0046AL215_1_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : ZHU-JUN 
REMARK  ---------------------------------------------------------- 
TARGET     T0046  
AUTHOR     4070-8855-4894  
METHOD     The target is compared with PDB25 database (U.Hobohm et al., 1992).  
METHOD     For each structure in PDB25, a model is built in the following way:  
METHOD     the sequence (query) is compared with NR database using transitive   
METHOD     BLAST (Neuwald et al. 1997). Similar sequences are collected and   
METHOD     purged at score 150.  Those sequences are aligned with query   
METHOD     sequence using Bayesian aligner (Zhu et al., 1998) and a   
METHOD     profile-like model is built (Lawrence et al. 1993; Gribskov et al.,  
METHOD     1987; unpublished result by Jun Zhu, Roland Luthy and Charlse E.   
METHOD     Lawrence).  Then, the target file is compared with the models   
METHOD     derived from PDB25.  
MODEL     1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1cid 
ATOM      1  N   PRO     2     -17.108  25.866  23.850  1.00  0.00              
ATOM      2  CA  PRO     2     -16.775  27.193  23.310  1.00  0.00              
ATOM      3  C   PRO     2     -16.102  27.977  24.409  1.00  0.00              
ATOM      4  O   PRO     2     -14.931  27.736  24.702  1.00  0.00              
ATOM      5  N   SER     3     -16.873  28.855  24.984  1.00  0.00              
ATOM      6  CA  SER     3     -16.420  29.817  26.019  1.00  0.00              
ATOM      7  C   SER     3     -15.293  29.314  26.966  1.00  0.00              
ATOM      8  O   SER     3     -15.134  28.108  27.203  1.00  0.00              
ATOM      9  N   ILE     4     -14.564  30.330  27.479  1.00  0.00              
ATOM     10  CA  ILE     4     -13.441  30.197  28.461  1.00  0.00              
ATOM     11  C   ILE     4     -13.356  31.499  29.319  1.00  0.00              
ATOM     12  O   ILE     4     -13.343  32.624  28.786  1.00  0.00              
ATOM     13  N   THR     5     -13.302  31.393  30.678  1.00  0.00              
ATOM     14  CA  THR     5     -13.252  32.648  31.479  1.00  0.00              
ATOM     15  C   THR     5     -12.018  32.598  32.366  1.00  0.00              
ATOM     16  O   THR     5     -11.704  31.490  32.732  1.00  0.00              
ATOM     17  N   ALA     6     -11.442  33.758  32.477  1.00  0.00              
ATOM     18  CA  ALA     6     -10.210  33.791  33.268  1.00  0.00              
ATOM     19  C   ALA     6     -10.539  34.938  34.216  1.00  0.00              
ATOM     20  O   ALA     6     -11.022  35.949  33.714  1.00  0.00              
ATOM     21  N   TYR     7     -10.295  34.446  35.455  1.00  0.00              
ATOM     22  CA  TYR     7     -10.551  35.385  36.611  1.00  0.00              
ATOM     23  C   TYR     7      -9.255  35.870  37.251  1.00  0.00              
ATOM     24  O   TYR     7      -8.507  34.966  37.698  1.00  0.00              
ATOM     25  N   SER     8      -8.964  37.165  37.253  1.00  0.00              
ATOM     26  CA  SER     8      -7.685  37.604  37.749  1.00  0.00              
ATOM     27  C   SER     8      -7.671  38.874  38.560  1.00  0.00              
ATOM     28  O   SER     8      -8.522  39.775  38.450  1.00  0.00              
ATOM     29  N   LYS     9      -6.635  39.002  39.387  1.00  0.00              
ATOM     30  CA  LYS     9      -6.480  40.185  40.231  1.00  0.00              
ATOM     31  C   LYS     9      -5.475  40.976  39.341  1.00  0.00              
ATOM     32  O   LYS     9      -4.548  40.529  38.647  1.00  0.00              
ATOM     33  N   ASN    10      -5.819  42.230  39.536  1.00  0.00              
ATOM     34  CA  ASN    10      -5.017  43.121  38.769  1.00  0.00              
ATOM     35  C   ASN    10      -3.569  42.909  38.990  1.00  0.00              
ATOM     36  O   ASN    10      -3.166  42.708  40.129  1.00  0.00              
ATOM     37  N   GLY    11      -2.795  43.065  37.962  1.00  0.00              
ATOM     38  CA  GLY    11      -1.340  42.952  37.969  1.00  0.00              
ATOM     39  C   GLY    11      -1.049  41.489  37.678  1.00  0.00              
ATOM     40  O   GLY    11       0.155  41.132  37.529  1.00  0.00              
ATOM     41  N   LEU    12      -2.018  40.605  37.562  1.00  0.00              
ATOM     42  CA  LEU    12      -1.596  39.197  37.258  1.00  0.00              
ATOM     43  C   LEU    12      -1.631  38.885  35.789  1.00  0.00              
ATOM     44  O   LEU    12      -2.140  39.652  34.980  1.00  0.00              
ATOM     45  N   LYS    13      -1.253  37.799  35.201  1.00  0.00              
ATOM     46  CA  LYS    13      -1.253  37.328  33.851  1.00  0.00              
ATOM     47  C   LYS    13      -2.465  36.504  33.555  1.00  0.00              
ATOM     48  O   LYS    13      -2.659  35.613  34.365  1.00  0.00              
ATOM     49  N   ILE    14      -3.265  36.580  32.540  1.00  0.00              
ATOM     50  CA  ILE    14      -4.370  35.719  32.176  1.00  0.00              
ATOM     51  C   ILE    14      -3.758  34.830  31.110  1.00  0.00              
ATOM     52  O   ILE    14      -3.115  35.383  30.229  1.00  0.00              
ATOM     53  N   GLU    15      -3.877  33.553  31.136  1.00  0.00              
ATOM     54  CA  GLU    15      -3.318  32.788  29.999  1.00  0.00              
ATOM     55  C   GLU    15      -4.417  31.843  29.517  1.00  0.00              
ATOM     56  O   GLU    15      -4.806  30.983  30.360  1.00  0.00              
ATOM     57  N   PHE    16      -4.827  31.978  28.280  1.00  0.00              
ATOM     58  CA  PHE    16      -5.875  31.054  27.744  1.00  0.00              
ATOM     59  C   PHE    16      -5.191  29.888  27.055  1.00  0.00              
ATOM     60  O   PHE    16      -4.055  30.148  26.650  1.00  0.00              
ATOM     61  N   THR    17      -5.683  28.685  26.950  1.00  0.00              
ATOM     62  CA  THR    17      -4.903  27.625  26.223  1.00  0.00              
ATOM     63  C   THR    17      -5.894  27.028  25.251  1.00  0.00              
ATOM     64  O   THR    17      -7.046  26.758  25.709  1.00  0.00              
ATOM     65  N   PHE    18      -5.601  26.848  23.976  1.00  0.00              
ATOM     66  CA  PHE    18      -6.618  26.329  22.978  1.00  0.00              
ATOM     67  C   PHE    18      -5.978  25.085  22.409  1.00  0.00              
ATOM     68  O   PHE    18      -4.974  25.129  21.685  1.00  0.00              
ATOM     69  N   GLU    19      -6.631  24.030  22.830  1.00  0.00              
ATOM     70  CA  GLU    19      -5.996  22.740  22.599  1.00  0.00              
ATOM     71  C   GLU    19      -6.444  21.725  21.610  1.00  0.00              
ATOM     72  O   GLU    19      -6.033  20.542  21.707  1.00  0.00              
ATOM     73  N   ARG    20      -7.202  22.237  20.700  1.00  0.00              
ATOM     74  CA  ARG    20      -7.903  21.567  19.630  1.00  0.00              
ATOM     75  C   ARG    20      -7.145  20.971  18.446  1.00  0.00              
ATOM     76  O   ARG    20      -6.275  21.572  17.810  1.00  0.00              
ATOM     77  N   SER    21      -7.549  19.736  18.191  1.00  0.00              
ATOM     78  CA  SER    21      -7.296  18.713  17.192  1.00  0.00              
ATOM     79  C   SER    21      -5.966  18.784  16.450  1.00  0.00              
ATOM     80  O   SER    21      -5.927  18.595  15.210  1.00  0.00              
ATOM     81  N   ASN    22      -4.921  19.038  17.233  1.00  0.00              
ATOM     82  CA  ASN    22      -3.560  19.282  16.699  1.00  0.00              
ATOM     83  C   ASN    22      -2.944  18.197  15.786  1.00  0.00              
ATOM     84  O   ASN    22      -2.073  17.399  16.205  1.00  0.00              
ATOM     85  N   THR    23      -3.366  18.265  14.509  1.00  0.00              
ATOM     86  CA  THR    23      -2.913  17.348  13.439  1.00  0.00              
ATOM     87  C   THR    23      -1.731  18.060  12.775  1.00  0.00              
ATOM     88  O   THR    23      -0.945  18.743  13.485  1.00  0.00              
ATOM     89  N   ASN    24      -1.721  17.879  11.460  1.00  0.00              
ATOM     90  CA  ASN    24      -0.564  18.579  10.815  1.00  0.00              
ATOM     91  C   ASN    24      -0.852  19.998  10.371  1.00  0.00              
ATOM     92  O   ASN    24      -0.013  20.676   9.708  1.00  0.00              
ATOM     93  N   PRO    25      -1.978  20.582  10.764  1.00  0.00              
ATOM     94  CA  PRO    25      -2.476  21.943  10.482  1.00  0.00              
ATOM     95  C   PRO    25      -1.654  23.253  10.683  1.00  0.00              
ATOM     96  O   PRO    25      -0.877  23.687  11.558  1.00  0.00              
ATOM     97  N   SER    26      -1.908  24.051   9.651  1.00  0.00              
ATOM     98  CA  SER    26      -1.646  25.355   9.067  1.00  0.00              
ATOM     99  C   SER    26      -3.039  26.069   9.107  1.00  0.00              
ATOM    100  O   SER    26      -4.181  25.615   8.805  1.00  0.00              
END
