PFRMAT SS 
TARGET T0046 
AUTHOR 3403-1625-5531 
METHOD New Joint Method including SSthread 
METHOD (Prediction of protein Secondary Structure using Threading) 
METHOD K. Nishikawa and T. Noguchi:  
METHOD Methods in Enzymology, Vol.202, pp.31-44 (1991).  
METHOD M. Ito, Y. Matsuo and K. Nishikawa:  
METHOD Comput. Appl. Biosci. Vol.13, pp.415-423 (1997). 
MODEL  2 
I C 1.0 
P C 1.0 
S C 1.0 
I E 0.6 
T E 0.6 
A E 0.2 
Y C 0.6 
S C 0.8 
K C 1.0 
N C 1.0 
G C 1.0 
L C 0.6 
K E 0.8 
I E 1.0 
E E 1.0 
F E 1.0 
T E 0.8 
F E 0.8 
E E 0.3 
R C 1.0 
S C 1.0 
N C 1.0 
T C 1.0 
N C 1.0 
P C 1.0 
S C 1.0 
V E 1.0 
T E 1.0 
V E 1.0 
I E 1.0 
T E 1.0 
I E 1.0 
Q E 0.3 
A C 1.0 
S C 1.0 
N C 1.0 
S C 1.0 
T C 1.0 
E C 0.8 
L C 0.8 
D C 0.8 
M C 0.2 
T C 0.2 
D C 0.1 
F E 0.1 
V E 0.1 
F E 0.1 
Q E 0.1 
A C 0.1 
A C 0.6 
V C 1.0 
P C 0.8 
K C 0.8 
T E 0.2 
F E 0.2 
Q E 0.6 
L E 1.0 
Q E 1.0 
L E 1.0 
L E 0.6 
S C 0.8 
P C 1.0 
S C 1.0 
S C 1.0 
S E 0.2 
V E 0.2 
V E 0.6 
P E 0.6 
A E 0.6 
F C 0.6 
N C 0.8 
T C 0.8 
G C 0.8 
T C 0.8 
I E 0.2 
T E 0.8 
Q E 0.8 
V E 0.8 
I E 0.8 
K E 0.8 
V E 0.6 
L C 0.4 
N C 0.8 
P C 1.0 
Q C 1.0 
K C 0.6 
Q C 0.6 
Q C 0.6 
L E 0.6 
R E 0.6 
M E 0.6 
R E 0.6 
I E 0.6 
K E 0.8 
L E 0.8 
T E 0.6 
Y E 0.6 
N C 0.8 
H C 1.0 
K C 1.0 
G C 1.0 
S C 1.0 
A C 0.6 
M C 0.1 
Q C 0.1 
D C 0.1 
L E 0.1 
A E 0.1 
E E 0.1 
V E 0.2 
N C 1.0 
N C 1.0 
F C 1.0 
P C 1.0 
P C 1.0 
Q C 1.0 
S C 1.0 
W C 0.8 
Q C 0.8 
END 
