PFRMAT SS 
TARGET T0047 
AUTHOR 1751-3146-3362 
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net 
METHOD This is a 4-layer network, with  
METHOD	window	units 
METHOD	    9	    6 
METHOD	   11	    9 
METHOD	    3	    8 
METHOD	    7	    3 (1 EHL ) 
METHOD The input amino acid frequencies were determined from 
METHOD alignment t47.t98_4.a2m.gz 
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5) 
METHOD The weighting was determined by the posterior distribution 
METHOD after regularizing with recode3.20comp. 
METHOD Counts were regularized to probabilities using 
METHOD /projects/compbio/lib/recode3.20comp 
METHOD Total sequence weight for alignment was 26.3295 
METHOD 
MODEL 1 
E C 0.90 
E C 0.80 
A C 0.76 
S C 0.77 
S C 0.73 
T C 0.65 
R C 0.69 
G C 0.77 
N C 0.75 
L C 0.67 
D C 0.64 
V H 0.51 
A H 0.65 
K H 0.61 
L H 0.49 
N C 0.58 
G C 0.74 
D C 0.60 
W E 0.59 
F E 0.78 
S E 0.92 
I E 0.96 
V E 0.96 
V E 0.94 
A E 0.78 
S C 0.68 
N C 0.92 
K C 0.90 
R C 0.68 
E C 0.53 
K C 0.39 
I H 0.49 
E H 0.46 
E C 0.55 
N C 0.84 
G C 0.91 
S C 0.87 
M C 0.48 
R E 0.67 
V E 0.77 
F E 0.78 
M E 0.76 
Q E 0.80 
H E 0.81 
I E 0.74 
D E 0.61 
V C 0.52 
L C 0.76 
E C 0.89 
N C 0.93 
S C 0.86 
L E 0.57 
G E 0.89 
F E 0.95 
K E 0.96 
F E 0.95 
R E 0.91 
I E 0.81 
K E 0.62 
E C 0.59 
N C 0.86 
G C 0.86 
E C 0.70 
C C 0.48 
R E 0.67 
E E 0.82 
L E 0.87 
Y E 0.92 
L E 0.94 
V E 0.94 
A E 0.91 
Y E 0.78 
K E 0.52 
T C 0.71 
P C 0.81 
E C 0.90 
D C 0.92 
G C 0.57 
E E 0.89 
Y E 0.96 
F E 0.97 
V E 0.95 
E E 0.87 
Y E 0.66 
D C 0.63 
G C 0.77 
G C 0.90 
N C 0.88 
T E 0.55 
F E 0.91 
T E 0.97 
I E 0.97 
L E 0.94 
K E 0.78 
T C 0.60 
D C 0.77 
Y C 0.54 
D H 0.48 
R C 0.43 
Y E 0.44 
V E 0.69 
M E 0.80 
F E 0.81 
H E 0.74 
L E 0.54 
I C 0.51 
N C 0.66 
F C 0.69 
K C 0.78 
N C 0.88 
G C 0.90 
E C 0.73 
T C 0.52 
F C 0.40 
Q E 0.46 
L E 0.61 
M E 0.61 
V E 0.65 
L E 0.60 
Y E 0.45 
G C 0.60 
R C 0.68 
T C 0.78 
K C 0.77 
D C 0.74 
L C 0.83 
S C 0.53 
S H 0.94 
D H 0.98 
I H 0.98 
K H 0.99 
E H 1.00 
K H 1.00 
F H 1.00 
A H 1.00 
K H 0.99 
L H 0.99 
C H 0.97 
E H 0.93 
A H 0.79 
H C 0.60 
G C 0.80 
I C 0.76 
T C 0.68 
R C 0.51 
D C 0.54 
N C 0.49 
I E 0.48 
I E 0.55 
D E 0.52 
L C 0.58 
T C 0.77 
K C 0.77 
T C 0.54 
D H 0.49 
R C 0.60 
C C 0.70 
L C 0.74 
Q C 0.81 
A C 0.86 
R C 0.88 
G C 0.86 
END 
