REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0052AL084_2 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : DIFRANCESCO 
REMARK  ---------------------------------------------------------- 
TARGET T0052  
AUTHOR 7278-7379-8158  
METHOD Insert references and an abstract  
METHOD The method is based on a combination of hidden Markov models and 	  
METHOD secondary structure prediction. Each HMM represents a structural family   
METHOD of proteins and it is trained from known secondary structure sequences   
METHOD of proteins belonging to the structural family.  
METHOD Secondary structure prediction is performed for the target sequence   
METHOD using several types of prediction algorithms (GOR, QL, PHD, etc.). The   
METHOD predicted fold of the target protein is the fold described by the HMM   
METHOD that fits one (or most) of the predicted secondary structure sequences   
METHOD the best.  
METHOD At present the library consists of about 300 HMMs  
METHOD Di Francesco et al. JMB (1997) 267, 446-463  
METHOD Di Francesco et al. Proteins, Supplement 1 (1997) 123-128  
REMARK Chosen model: 1sxl, Crambin   
REMARK GOR prediction used for the alignment  
MODEL 2  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1sxl 
ATOM      1  N   GLN    14     -10.597  -3.359 -10.031  1.00  0.00              
ATOM      2  CA  GLN    14     -10.896  -2.115 -10.794  1.00  0.00              
ATOM      3  C   GLN    14      -9.780  -1.108 -10.526  1.00  0.00              
ATOM      4  O   GLN    14      -8.803  -1.046 -11.245  1.00  0.00              
ATOM      5  N   GLY    15      -9.902  -0.334  -9.485  1.00  0.00              
ATOM      6  CA  GLY    15      -8.829   0.645  -9.166  1.00  0.00              
ATOM      7  C   GLY    15      -8.969   1.095  -7.712  1.00  0.00              
ATOM      8  O   GLY    15      -9.732   1.985  -7.396  1.00  0.00              
ATOM      9  N   SER    16      -8.235   0.484  -6.828  1.00  0.00              
ATOM     10  CA  SER    16      -8.317   0.867  -5.393  1.00  0.00              
ATOM     11  C   SER    16      -6.953   0.659  -4.731  1.00  0.00              
ATOM     12  O   SER    16      -6.835  -0.016  -3.730  1.00  0.00              
ATOM     13  N   VAL    17      -5.923   1.250  -5.272  1.00  0.00              
ATOM     14  CA  VAL    17      -4.577   1.090  -4.656  1.00  0.00              
ATOM     15  C   VAL    17      -4.497   2.013  -3.445  1.00  0.00              
ATOM     16  O   VAL    17      -5.303   2.908  -3.289  1.00  0.00              
ATOM     17  N   LEU    18      -3.546   1.814  -2.578  1.00  0.00              
ATOM     18  CA  LEU    18      -3.471   2.704  -1.387  1.00  0.00              
ATOM     19  C   LEU    18      -2.077   3.306  -1.253  1.00  0.00              
ATOM     20  O   LEU    18      -1.074   2.664  -1.504  1.00  0.00              
ATOM     21  N   THR    19      -2.018   4.549  -0.861  1.00  0.00              
ATOM     22  CA  THR    19      -0.704   5.229  -0.708  1.00  0.00              
ATOM     23  C   THR    19      -0.113   4.891   0.659  1.00  0.00              
ATOM     24  O   THR    19      -0.609   5.315   1.684  1.00  0.00              
ATOM     25  N   SER    20       0.945   4.130   0.685  1.00  0.00              
ATOM     26  CA  SER    20       1.568   3.769   1.988  1.00  0.00              
ATOM     27  C   SER    20       2.526   4.880   2.413  1.00  0.00              
ATOM     28  O   SER    20       3.502   5.157   1.748  1.00  0.00              
ATOM     29  N   THR    21       2.254   5.528   3.513  1.00  0.00              
ATOM     30  CA  THR    21       3.158   6.627   3.961  1.00  0.00              
ATOM     31  C   THR    21       4.235   6.063   4.890  1.00  0.00              
ATOM     32  O   THR    21       4.114   4.971   5.408  1.00  0.00              
ATOM     33  N   CYS    22       5.291   6.801   5.102  1.00  0.00              
ATOM     34  CA  CYS    22       6.380   6.311   5.994  1.00  0.00              
ATOM     35  C   CYS    22       6.827   4.920   5.540  1.00  0.00              
ATOM     36  O   CYS    22       6.307   3.915   5.984  1.00  0.00              
ATOM     37  N   GLU    23       7.787   4.854   4.660  1.00  0.00              
ATOM     38  CA  GLU    23       8.269   3.529   4.177  1.00  0.00              
ATOM     39  C   GLU    23       9.693   3.674   3.637  1.00  0.00              
ATOM     40  O   GLU    23       9.890   4.058   2.502  1.00  0.00              
ATOM     41  N   ARG    24      10.642   3.360   4.476  1.00  0.00              
ATOM     42  CA  ARG    24      12.050   3.471   4.039  1.00  0.00              
ATOM     43  C   ARG    24      12.364   2.404   2.987  1.00  0.00              
ATOM     44  O   ARG    24      11.594   1.489   2.770  1.00  0.00              
ATOM     45  N   THR    25      13.489   2.508   2.334  1.00  0.00              
ATOM     46  CA  THR    25      13.845   1.497   1.300  1.00  0.00              
ATOM     47  C   THR    25      14.578   0.328   1.959  1.00  0.00              
ATOM     48  O   THR    25      15.560  -0.170   1.445  1.00  0.00              
ATOM     49  N   ASN    26      14.112  -0.114   3.095  1.00  0.00              
ATOM     50  CA  ASN    26      14.785  -1.252   3.785  1.00  0.00              
ATOM     51  C   ASN    26      14.348  -2.570   3.142  1.00  0.00              
ATOM     52  O   ASN    26      14.925  -3.610   3.386  1.00  0.00              
ATOM     53  N   GLY    27      13.336  -2.535   2.319  1.00  0.00              
ATOM     54  CA  GLY    27      12.869  -3.788   1.658  1.00  0.00              
ATOM     55  C   GLY    27      12.839  -3.583   0.141  1.00  0.00              
ATOM     56  O   GLY    27      13.207  -2.540  -0.362  1.00  0.00              
ATOM     57  N   GLY    28      12.408  -4.572  -0.593  1.00  0.00              
ATOM     58  CA  GLY    28      12.361  -4.430  -2.073  1.00  0.00              
ATOM     59  C   GLY    28      10.905  -4.368  -2.537  1.00  0.00              
ATOM     60  O   GLY    28      10.009  -4.878  -1.888  1.00  0.00              
ATOM     61  N   TYR    29      10.660  -3.743  -3.656  1.00  0.00              
ATOM     62  CA  TYR    29       9.266  -3.642  -4.167  1.00  0.00              
ATOM     63  C   TYR    29       8.689  -5.047  -4.343  1.00  0.00              
ATOM     64  O   TYR    29       7.586  -5.332  -3.925  1.00  0.00              
ATOM     65  N   ASN    30       9.429  -5.927  -4.958  1.00  0.00              
ATOM     66  CA  ASN    30       8.923  -7.312  -5.161  1.00  0.00              
ATOM     67  C   ASN    30       8.767  -8.001  -3.804  1.00  0.00              
ATOM     68  O   ASN    30       8.067  -8.986  -3.675  1.00  0.00              
ATOM     69  N   THR    31       9.415  -7.495  -2.790  1.00  0.00              
ATOM     70  CA  THR    31       9.303  -8.130  -1.448  1.00  0.00              
ATOM     71  C   THR    31       7.911  -7.878  -0.872  1.00  0.00              
ATOM     72  O   THR    31       7.252  -8.787  -0.404  1.00  0.00              
ATOM     73  N   SER    32       7.452  -6.657  -0.896  1.00  0.00              
ATOM     74  CA  SER    32       6.098  -6.374  -0.344  1.00  0.00              
ATOM     75  C   SER    32       5.125  -7.434  -0.862  1.00  0.00              
ATOM     76  O   SER    32       4.132  -7.742  -0.233  1.00  0.00              
ATOM     77  N   SER    33       5.410  -8.002  -2.003  1.00  0.00              
ATOM     78  CA  SER    33       4.511  -9.050  -2.558  1.00  0.00              
ATOM     79  C   SER    33       4.520 -10.262  -1.626  1.00  0.00              
ATOM     80  O   SER    33       3.485 -10.756  -1.221  1.00  0.00              
ATOM     81  N   ILE    34       5.684 -10.745  -1.281  1.00  0.00              
ATOM     82  CA  ILE    34       5.761 -11.923  -0.373  1.00  0.00              
ATOM     83  C   ILE    34       4.974 -11.623   0.903  1.00  0.00              
ATOM     84  O   ILE    34       4.221 -12.445   1.387  1.00  0.00              
ATOM     85  N   ASP    35       5.138 -10.450   1.452  1.00  0.00              
ATOM     86  CA  ASP    35       4.391 -10.103   2.693  1.00  0.00              
ATOM     87  C   ASP    35       2.889 -10.249   2.434  1.00  0.00              
ATOM     88  O   ASP    35       2.141 -10.659   3.300  1.00  0.00              
ATOM     89  N   LEU    36      -1.886  -6.149  -8.101  1.00  0.00              
ATOM     90  CA  LEU    36      -1.618  -5.847  -9.546  1.00  0.00              
ATOM     91  C   LEU    36      -0.478  -4.819  -9.670  1.00  0.00              
ATOM     92  O   LEU    36      -0.208  -4.316 -10.743  1.00  0.00              
ATOM     93  N   ASN    37       0.206  -4.508  -8.595  1.00  0.00              
ATOM     94  CA  ASN    37       1.319  -3.519  -8.697  1.00  0.00              
ATOM     95  C   ASN    37       2.167  -3.520  -7.418  1.00  0.00              
ATOM     96  O   ASN    37       2.110  -4.428  -6.613  1.00  0.00              
ATOM     97  N   SER    38       2.969  -2.502  -7.251  1.00  0.00              
ATOM     98  CA  SER    38       3.863  -2.404  -6.055  1.00  0.00              
ATOM     99  C   SER    38       5.002  -1.437  -6.403  1.00  0.00              
ATOM    100  O   SER    38       5.884  -1.770  -7.169  1.00  0.00              
ATOM    101  N   VAL    39       4.995  -0.241  -5.875  1.00  0.00              
ATOM    102  CA  VAL    39       6.087   0.715  -6.229  1.00  0.00              
ATOM    103  C   VAL    39       6.546   1.501  -4.997  1.00  0.00              
ATOM    104  O   VAL    39       6.065   1.305  -3.900  1.00  0.00              
ATOM    105  N   ILE    40       7.481   2.394  -5.189  1.00  0.00              
ATOM    106  CA  ILE    40       7.996   3.214  -4.054  1.00  0.00              
ATOM    107  C   ILE    40       8.195   4.655  -4.533  1.00  0.00              
ATOM    108  O   ILE    40       8.620   4.892  -5.647  1.00  0.00              
ATOM    109  N   GLU    41       7.893   5.623  -3.709  1.00  0.00              
ATOM    110  CA  GLU    41       8.069   7.041  -4.136  1.00  0.00              
ATOM    111  C   GLU    41       8.904   7.787  -3.095  1.00  0.00              
ATOM    112  O   GLU    41       8.632   7.734  -1.912  1.00  0.00              
ATOM    113  N   ASN    42       9.918   8.486  -3.527  1.00  0.00              
ATOM    114  CA  ASN    42      10.770   9.237  -2.563  1.00  0.00              
ATOM    115  C   ASN    42      10.618  10.739  -2.814  1.00  0.00              
ATOM    116  O   ASN    42      10.134  11.162  -3.844  1.00  0.00              
ATOM    117  N   VAL    43      11.030  11.551  -1.878  1.00  0.00              
ATOM    118  CA  VAL    43      10.912  13.024  -2.062  1.00  0.00              
ATOM    119  C   VAL    43      12.219  13.693  -1.632  1.00  0.00              
ATOM    120  O   VAL    43      12.276  14.384  -0.634  1.00  0.00              
ATOM    121  N   ASP    44      13.270  13.492  -2.378  1.00  0.00              
ATOM    122  CA  ASP    44      14.574  14.114  -2.012  1.00  0.00              
ATOM    123  C   ASP    44      15.157  14.836  -3.229  1.00  0.00              
ATOM    124  O   ASP    44      16.228  15.406  -3.170  1.00  0.00              
ATOM    125  N   GLY    45      14.458  14.821  -4.333  1.00  0.00              
ATOM    126  CA  GLY    45      14.973  15.508  -5.551  1.00  0.00              
ATOM    127  C   GLY    45      13.797  16.048  -6.367  1.00  0.00              
ATOM    128  O   GLY    45      13.936  16.389  -7.525  1.00  0.00              
ATOM    129  N   SER    46      12.640  16.127  -5.770  1.00  0.00              
ATOM    130  CA  SER    46      11.453  16.646  -6.508  1.00  0.00              
ATOM    131  C   SER    46      10.600  17.495  -5.564  1.00  0.00              
ATOM    132  O   SER    46      10.072  18.522  -5.942  1.00  0.00              
ATOM    133  N   LEU    47      10.462  17.074  -4.337  1.00  0.00              
ATOM    134  CA  LEU    47       9.647  17.856  -3.367  1.00  0.00              
ATOM    135  C   LEU    47       8.164  17.703  -3.706  1.00  0.00              
ATOM    136  O   LEU    47       7.383  18.619  -3.540  1.00  0.00              
ATOM    137  N   LYS    48       7.767  16.553  -4.182  1.00  0.00              
ATOM    138  CA  LYS    48       6.332  16.351  -4.530  1.00  0.00              
ATOM    139  C   LYS    48       5.666  15.469  -3.470  1.00  0.00              
ATOM    140  O   LYS    48       4.695  15.868  -2.860  1.00  0.00              
ATOM    141  N   TRP    49       6.212  14.295  -3.275  1.00  0.00              
ATOM    142  CA  TRP    49       5.610  13.408  -2.254  1.00  0.00              
ATOM    143  C   TRP    49       6.247  13.678  -0.888  1.00  0.00              
ATOM    144  O   TRP    49       6.884  14.691  -0.677  1.00  0.00              
ATOM    145  N   GLN    50       6.082  12.776   0.041  1.00  0.00              
ATOM    146  CA  GLN    50       6.679  12.975   1.392  1.00  0.00              
ATOM    147  C   GLN    50       7.179  11.631   1.925  1.00  0.00              
ATOM    148  O   GLN    50       6.712  11.141   2.934  1.00  0.00              
ATOM    149  N   PRO    51       8.123  11.028   1.254  1.00  0.00              
ATOM    150  CA  PRO    51       8.645   9.715   1.723  1.00  0.00              
ATOM    151  C   PRO    51       7.481   8.736   1.880  1.00  0.00              
ATOM    152  O   PRO    51       7.003   8.494   2.971  1.00  0.00              
ATOM    153  N   SER    52       7.015   8.178   0.796  1.00  0.00              
ATOM    154  CA  SER    52       5.876   7.222   0.881  1.00  0.00              
ATOM    155  C   SER    52       5.877   6.308  -0.346  1.00  0.00              
ATOM    156  O   SER    52       6.178   6.728  -1.446  1.00  0.00              
ATOM    157  N   ASN    53       5.531   5.064  -0.168  1.00  0.00              
ATOM    158  CA  ASN    53       5.495   4.130  -1.325  1.00  0.00              
ATOM    159  C   ASN    53       4.048   3.971  -1.784  1.00  0.00              
ATOM    160  O   ASN    53       3.151   4.607  -1.267  1.00  0.00              
ATOM    161  N   PHE    54       3.805   3.131  -2.749  1.00  0.00              
ATOM    162  CA  PHE    54       2.409   2.944  -3.228  1.00  0.00              
ATOM    163  C   PHE    54       2.112   1.453  -3.367  1.00  0.00              
ATOM    164  O   PHE    54       2.597   0.796  -4.265  1.00  0.00              
ATOM    165  N   ILE    55       1.310   0.912  -2.493  1.00  0.00              
ATOM    166  CA  ILE    55       0.982  -0.535  -2.593  1.00  0.00              
ATOM    167  C   ILE    55      -0.196  -0.694  -3.554  1.00  0.00              
ATOM    168  O   ILE    55      -0.926   0.242  -3.827  1.00  0.00              
ATOM    169  N   GLU    56      -0.383  -1.874  -4.065  1.00  0.00              
ATOM    170  CA  GLU    56      -1.499  -2.097  -5.013  1.00  0.00              
ATOM    171  C   GLU    56      -2.636  -2.849  -4.337  1.00  0.00              
ATOM    172  O   GLU    56      -2.428  -3.799  -3.609  1.00  0.00              
ATOM    173  N   GLY    65      -3.837  -2.473  -4.645  1.00  0.00              
ATOM    174  CA  GLY    65      -5.019  -3.195  -4.115  1.00  0.00              
ATOM    175  C   GLY    65      -6.216  -2.830  -5.002  1.00  0.00              
ATOM    176  O   GLY    65      -7.117  -2.124  -4.598  1.00  0.00              
ATOM    177  N   SER    66      -6.206  -3.289  -6.226  1.00  0.00              
ATOM    178  CA  SER    66      -7.297  -2.960  -7.173  1.00  0.00              
ATOM    179  C   SER    66      -8.647  -3.161  -6.493  1.00  0.00              
ATOM    180  O   SER    66      -9.218  -2.247  -5.941  1.00  0.00              
ATOM    181  N   SER    67      -9.154  -4.369  -6.537  1.00  0.00              
ATOM    182  CA  SER    67     -10.468  -4.672  -5.898  1.00  0.00              
ATOM    183  C   SER    67     -10.603  -3.880  -4.600  1.00  0.00              
ATOM    184  O   SER    67      -9.826  -4.039  -3.679  1.00  0.00              
ATOM    185  N   GLU    68     -11.579  -3.022  -4.522  1.00  0.00              
ATOM    186  CA  GLU    68     -11.761  -2.215  -3.289  1.00  0.00              
ATOM    187  C   GLU    68     -11.638  -3.119  -2.060  1.00  0.00              
ATOM    188  O   GLU    68     -10.941  -2.806  -1.114  1.00  0.00              
ATOM    189  N   LEU    69     -12.307  -4.238  -2.064  1.00  0.00              
ATOM    190  CA  LEU    69     -12.226  -5.158  -0.894  1.00  0.00              
ATOM    191  C   LEU    69     -10.761  -5.487  -0.599  1.00  0.00              
ATOM    192  O   LEU    69     -10.302  -5.381   0.523  1.00  0.00              
ATOM    193  N   ALA    70     -10.021  -5.884  -1.598  1.00  0.00              
ATOM    194  CA  ALA    70      -8.588  -6.217  -1.370  1.00  0.00              
ATOM    195  C   ALA    70      -7.895  -5.035  -0.690  1.00  0.00              
ATOM    196  O   ALA    70      -7.121  -5.205   0.230  1.00  0.00              
ATOM    197  N   ALA    71      -8.165  -3.834  -1.124  1.00  0.00              
ATOM    198  CA  ALA    71      -7.514  -2.661  -0.477  1.00  0.00              
ATOM    199  C   ALA    71      -7.809  -2.705   1.020  1.00  0.00              
ATOM    200  O   ALA    71      -6.952  -2.431   1.836  1.00  0.00              
ATOM    201  N   GLU    72      -9.004  -3.078   1.395  1.00  0.00              
ATOM    202  CA  GLU    72      -9.316  -3.170   2.845  1.00  0.00              
ATOM    203  C   GLU    72      -8.282  -4.103   3.473  1.00  0.00              
ATOM    204  O   GLU    72      -7.705  -3.819   4.510  1.00  0.00              
ATOM    205  N   CYS    73      -8.016  -5.208   2.830  1.00  0.00              
ATOM    206  CA  CYS    73      -6.993  -6.139   3.367  1.00  0.00              
ATOM    207  C   CYS    73      -5.748  -5.325   3.691  1.00  0.00              
ATOM    208  O   CYS    73      -5.333  -5.237   4.822  1.00  0.00              
ATOM    209  N   LYS    74      -5.157  -4.718   2.698  1.00  0.00              
ATOM    210  CA  LYS    74      -3.941  -3.898   2.946  1.00  0.00              
ATOM    211  C   LYS    74      -4.153  -3.055   4.199  1.00  0.00              
ATOM    212  O   LYS    74      -3.264  -2.900   5.009  1.00  0.00              
ATOM    213  N   THR    75      -5.326  -2.515   4.385  1.00  0.00              
ATOM    214  CA  THR    75      -5.558  -1.706   5.609  1.00  0.00              
ATOM    215  C   THR    75      -5.016  -2.499   6.799  1.00  0.00              
ATOM    216  O   THR    75      -4.103  -2.076   7.476  1.00  0.00              
ATOM    217  N   ARG    76      -5.550  -3.663   7.038  1.00  0.00              
ATOM    218  CA  ARG    76      -5.046  -4.486   8.178  1.00  0.00              
ATOM    219  C   ARG    76      -3.802  -5.280   7.752  1.00  0.00              
ATOM    220  O   ARG    76      -2.704  -5.036   8.212  1.00  0.00              
ATOM    221  N   ALA    77      -3.979  -6.240   6.891  1.00  0.00              
ATOM    222  CA  ALA    77      -2.837  -7.083   6.430  1.00  0.00              
ATOM    223  C   ALA    77      -1.613  -6.228   6.069  1.00  0.00              
ATOM    224  O   ALA    77      -0.515  -6.501   6.513  1.00  0.00              
ATOM    225  N   GLN    78      -1.772  -5.217   5.255  1.00  0.00              
ATOM    226  CA  GLN    78      -0.583  -4.397   4.871  1.00  0.00              
ATOM    227  C   GLN    78      -0.226  -3.405   5.988  1.00  0.00              
ATOM    228  O   GLN    78       0.925  -3.045   6.131  1.00  0.00              
ATOM    229  N   GLN    79      -1.167  -2.958   6.796  1.00  0.00              
ATOM    230  CA  GLN    79      -0.783  -2.009   7.888  1.00  0.00              
ATOM    231  C   GLN    79       0.469  -2.572   8.567  1.00  0.00              
ATOM    232  O   GLN    79       0.444  -3.646   9.137  1.00  0.00              
ATOM    233  N   PHE    80       1.574  -1.886   8.477  1.00  0.00              
ATOM    234  CA  PHE    80       2.820  -2.430   9.082  1.00  0.00              
ATOM    235  C   PHE    80       3.127  -3.763   8.393  1.00  0.00              
ATOM    236  O   PHE    80       2.848  -4.823   8.919  1.00  0.00              
ATOM    237  N   VAL    81       3.680  -3.717   7.208  1.00  0.00              
ATOM    238  CA  VAL    81       3.983  -4.982   6.474  1.00  0.00              
ATOM    239  C   VAL    81       5.346  -5.520   6.920  1.00  0.00              
ATOM    240  O   VAL    81       6.165  -5.925   6.117  1.00  0.00              
ATOM    241  N   SER    82       5.587  -5.532   8.202  1.00  0.00              
ATOM    242  CA  SER    82       6.885  -6.045   8.720  1.00  0.00              
ATOM    243  C   SER    82       6.650  -6.754  10.055  1.00  0.00              
ATOM    244  O   SER    82       5.814  -6.342  10.836  1.00  0.00              
ATOM    245  N   THR    83       7.407  -7.792  10.280  1.00  0.00              
ATOM    246  CA  THR    83       7.246  -8.519  11.555  1.00  0.00              
ATOM    247  C   THR    83       7.588  -7.585  12.717  1.00  0.00              
ATOM    248  O   THR    83       8.525  -6.815  12.643  1.00  0.00              
ATOM    249  N   LYS    84       6.833  -7.636  13.783  1.00  0.00              
ATOM    250  CA  LYS    84       7.112  -6.739  14.943  1.00  0.00              
ATOM    251  C   LYS    84       8.622  -6.643  15.172  1.00  0.00              
ATOM    252  O   LYS    84       9.248  -7.572  15.643  1.00  0.00              
END
