REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0052AL176_2_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : UNAGI 
REMARK  ---------------------------------------------------------- 
TARGET T0052  
AUTHOR 7169-6295-1599  
METHOD The target sequence exhibits a internal duplication.  
METHOD The corresponding halves (1-50; N half, 51-101; C half)   
METHOD and their repetitions (e.g., sequence made by N half plus   
METHOD N half) as well as T0052 sequence itself were threaded on   
METHOD the structural library constructed from rel.83 of PDB. We assume   
METHOD the answer structure keep the structural symmetry and   
METHOD its disulfide bonds. The results of secondary structure   
METHOD predictions (N half; beta-rich, C half; alpha-rich) did not   
METHOD coincide with our hypothesis, thus we neglected them and considered   
METHOD the fold may be either alpha-rich or beta-rich. The results of the   
METHOD threading were not significant in many cases (also in the   
METHOD inverse folding search), so we think the target's fold may   
METHOD be a new one or very difficult to detect. Yet among the   
METHOD structures having rather high compatibility scores, some   
METHOD structures meet the constraints of the structural symmetry   
METHOD and disulfide bonds. One of them is a DNA-binding protein   
METHOD (TATA-binding protein) consisting of two identical domains.   
METHOD Its monomeric structure is thin and probably unstable   
METHOD (T0052 is supposed to be monomeric, as reported   
METHOD in BBRC paper), so we synthesize the chimerical structure   
METHOD from the interacting domains of its dimeric structures.   
METHOD The structure is a kind of beta-sandwitches.  
MODEL 2  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1PCZ_A 
ATOM      1  N   LEU     1      50.707  42.935  67.909  1.00  0.00              
ATOM      2  CA  LEU     1      51.151  41.773  68.652  1.00  0.00              
ATOM      3  C   LEU     1      51.303  40.532  67.809  1.00  0.00              
ATOM      4  O   LEU     1      52.181  39.701  68.053  1.00  0.00              
ATOM      5  N   GLY     2      50.425  40.375  66.837  1.00  0.00              
ATOM      6  CA  GLY     2      50.507  39.221  65.968  1.00  0.00              
ATOM      7  C   GLY     2      51.794  39.282  65.181  1.00  0.00              
ATOM      8  O   GLY     2      52.515  38.303  65.089  1.00  0.00              
ATOM      9  N   LYS     3      52.121  40.465  64.682  1.00  0.00              
ATOM     10  CA  LYS     3      53.346  40.652  63.931  1.00  0.00              
ATOM     11  C   LYS     3      54.536  40.486  64.870  1.00  0.00              
ATOM     12  O   LYS     3      55.473  39.761  64.568  1.00  0.00              
ATOM     13  N   PHE     4      54.497  41.111  66.031  1.00  0.00              
ATOM     14  CA  PHE     4      55.603  40.945  66.972  1.00  0.00              
ATOM     15  C   PHE     4      55.759  39.465  67.273  1.00  0.00              
ATOM     16  O   PHE     4      56.849  38.930  67.198  1.00  0.00              
ATOM     17  N   SER     5      54.653  38.792  67.549  1.00  0.00              
ATOM     18  CA  SER     5      54.696  37.381  67.868  1.00  0.00              
ATOM     19  C   SER     5      55.219  36.559  66.703  1.00  0.00              
ATOM     20  O   SER     5      55.804  35.508  66.891  1.00  0.00              
ATOM     21  N   GLN     6      54.947  37.011  65.488  1.00  0.00              
ATOM     22  CA  GLN     6      55.405  36.298  64.313  1.00  0.00              
ATOM     23  C   GLN     6      56.858  36.620  64.071  1.00  0.00              
ATOM     24  O   GLN     6      57.625  35.782  63.639  1.00  0.00              
ATOM     25  N   THR     7      57.242  37.835  64.393  1.00  0.00              
ATOM     26  CA  THR     7      58.593  38.284  64.147  1.00  0.00              
ATOM     27  C   THR     7      59.604  37.934  65.231  1.00  0.00              
ATOM     28  O   THR     7      60.683  37.401  64.946  1.00  0.00              
ATOM     29  N   CYS     8      59.242  38.275  66.465  1.00  0.00              
ATOM     30  CA  CYS     8      60.053  38.079  67.652  1.00  0.00              
ATOM     31  C   CYS     8      60.257  36.640  67.988  1.00  0.00              
ATOM     32  O   CYS     8      59.309  35.927  68.313  1.00  0.00              
ATOM     33  N   TYR     9      61.527  36.221  68.023  1.00  0.00              
ATOM     34  CA  TYR     9      61.900  34.849  68.327  1.00  0.00              
ATOM     35  C   TYR     9      61.455  34.308  69.693  1.00  0.00              
ATOM     36  O   TYR     9      60.646  33.365  69.737  1.00  0.00              
ATOM     37  N   ASN    10      61.924  34.884  70.801  1.00  0.00              
ATOM     38  CA  ASN    10      61.522  34.307  72.086  1.00  0.00              
ATOM     39  C   ASN    10      60.381  35.007  72.818  1.00  0.00              
ATOM     40  O   ASN    10      60.571  35.645  73.866  1.00  0.00              
ATOM     41  N   SER    11      59.181  34.855  72.260  1.00  0.00              
ATOM     42  CA  SER    11      57.982  35.450  72.840  1.00  0.00              
ATOM     43  C   SER    11      56.786  34.505  72.707  1.00  0.00              
ATOM     44  O   SER    11      56.809  33.556  71.936  1.00  0.00              
ATOM     45  N   ALA    12      55.779  34.707  73.536  1.00  0.00              
ATOM     46  CA  ALA    12      54.625  33.847  73.521  1.00  0.00              
ATOM     47  C   ALA    12      53.461  34.727  73.235  1.00  0.00              
ATOM     48  O   ALA    12      53.382  35.850  73.723  1.00  0.00              
ATOM     49  N   ILE    13      52.500  34.182  72.524  1.00  0.00              
ATOM     50  CA  ILE    13      51.369  34.966  72.164  1.00  0.00              
ATOM     51  C   ILE    13      50.211  34.100  71.787  1.00  0.00              
ATOM     52  O   ILE    13      50.269  33.401  70.791  1.00  0.00              
ATOM     53  N   GLN    14      49.205  34.088  72.648  1.00  0.00              
ATOM     54  CA  GLN    14      47.965  33.392  72.400  1.00  0.00              
ATOM     55  C   GLN    14      46.925  34.236  73.116  1.00  0.00              
ATOM     56  O   GLN    14      46.405  33.862  74.158  1.00  0.00              
ATOM     57  N   GLY    15      46.551  35.370  72.485  1.00  0.00              
ATOM     58  CA  GLY    15      45.595  36.382  72.951  1.00  0.00              
ATOM     59  C   GLY    15      44.273  35.900  73.506  1.00  0.00              
ATOM     60  O   GLY    15      43.745  36.479  74.453  1.00  0.00              
ATOM     61  N   SER    16      43.746  34.829  72.947  1.00  0.00              
ATOM     62  CA  SER    16      42.471  34.311  73.423  1.00  0.00              
ATOM     63  C   SER    16      42.633  33.875  74.882  1.00  0.00              
ATOM     64  O   SER    16      41.783  34.162  75.737  1.00  0.00              
ATOM     65  N   VAL    17      43.740  33.169  75.116  1.00  0.00              
ATOM     66  CA  VAL    17      44.118  32.613  76.401  1.00  0.00              
ATOM     67  C   VAL    17      44.735  33.637  77.356  1.00  0.00              
ATOM     68  O   VAL    17      44.445  33.672  78.551  1.00  0.00              
ATOM     69  N   LEU    18      45.565  34.509  76.827  1.00  0.00              
ATOM     70  CA  LEU    18      46.221  35.468  77.672  1.00  0.00              
ATOM     71  C   LEU    18      46.496  36.677  76.827  1.00  0.00              
ATOM     72  O   LEU    18      47.109  36.562  75.777  1.00  0.00              
ATOM     73  N   THR    19      46.048  37.857  77.269  1.00  0.00              
ATOM     74  CA  THR    19      46.322  39.033  76.447  1.00  0.00              
ATOM     75  C   THR    19      47.784  39.428  76.460  1.00  0.00              
ATOM     76  O   THR    19      48.501  39.177  77.428  1.00  0.00              
ATOM     77  N   SER    20      48.233  39.984  75.341  1.00  0.00              
ATOM     78  CA  SER    20      49.586  40.469  75.247  1.00  0.00              
ATOM     79  C   SER    20      50.548  39.422  74.782  1.00  0.00              
ATOM     80  O   SER    20      50.190  38.260  74.625  1.00  0.00              
ATOM     81  N   THR    21      51.742  39.889  74.443  1.00  0.00              
ATOM     82  CA  THR    21      52.843  39.057  74.002  1.00  0.00              
ATOM     83  C   THR    21      53.709  38.944  75.247  1.00  0.00              
ATOM     84  O   THR    21      54.035  39.946  75.891  1.00  0.00              
ATOM     85  N   CYS    22      57.136  38.174  76.816  1.00  0.00              
ATOM     86  CA  CYS    22      58.532  38.149  76.465  1.00  0.00              
ATOM     87  C   CYS    22      59.326  37.786  77.710  1.00  0.00              
ATOM     88  O   CYS    22      59.406  38.548  78.665  1.00  0.00              
ATOM     89  N   GLU    23      59.907  36.605  77.706  1.00  0.00              
ATOM     90  CA  GLU    23      60.685  36.175  78.841  1.00  0.00              
ATOM     91  C   GLU    23      62.167  36.405  78.629  1.00  0.00              
ATOM     92  O   GLU    23      62.772  35.913  77.674  1.00  0.00              
ATOM     93  N   ARG    24      62.725  37.203  79.520  1.00  0.00              
ATOM     94  CA  ARG    24      64.127  37.527  79.498  1.00  0.00              
ATOM     95  C   ARG    24      64.849  36.493  80.365  1.00  0.00              
ATOM     96  O   ARG    24      64.350  36.061  81.416  1.00  0.00              
ATOM     97  N   THR    25      65.987  36.036  79.858  1.00  0.00              
ATOM     98  CA  THR    25      66.804  35.041  80.536  1.00  0.00              
ATOM     99  C   THR    25      67.704  35.727  81.560  1.00  0.00              
ATOM    100  O   THR    25      67.862  35.238  82.680  1.00  0.00              
ATOM    101  N   ASN    26      68.285  36.860  81.168  1.00  0.00              
ATOM    102  CA  ASN    26      69.161  37.620  82.045  1.00  0.00              
ATOM    103  C   ASN    26      68.801  39.107  81.980  1.00  0.00              
ATOM    104  O   ASN    26      69.025  39.767  80.971  1.00  0.00              
ATOM    105  N   GLY    27      68.170  39.636  83.035  1.00  0.00              
ATOM    106  CA  GLY    27      67.801  38.882  84.238  1.00  0.00              
ATOM    107  C   GLY    27      66.510  38.095  83.958  1.00  0.00              
ATOM    108  O   GLY    27      65.794  38.388  82.988  1.00  0.00              
ATOM    109  N   GLY    28      66.232  37.076  84.763  1.00  0.00              
ATOM    110  CA  GLY    28      65.015  36.313  84.566  1.00  0.00              
ATOM    111  C   GLY    28      63.871  37.255  84.905  1.00  0.00              
ATOM    112  O   GLY    28      63.804  37.805  85.995  1.00  0.00              
ATOM    113  N   TYR    29      63.053  37.533  83.903  1.00  0.00              
ATOM    114  CA  TYR    29      61.904  38.400  84.046  1.00  0.00              
ATOM    115  C   TYR    29      61.021  38.130  82.866  1.00  0.00              
ATOM    116  O   TYR    29      61.394  37.439  81.930  1.00  0.00              
ATOM    117  N   ASN    30      59.820  38.645  82.930  1.00  0.00              
ATOM    118  CA  ASN    30      58.890  38.468  81.854  1.00  0.00              
ATOM    119  C   ASN    30      58.246  39.814  81.617  1.00  0.00              
ATOM    120  O   ASN    30      57.945  40.563  82.561  1.00  0.00              
ATOM    121  N   THR    31      58.137  40.167  80.352  1.00  0.00              
ATOM    122  CA  THR    31      57.509  41.401  79.983  1.00  0.00              
ATOM    123  C   THR    31      56.246  40.996  79.256  1.00  0.00              
ATOM    124  O   THR    31      56.208  40.023  78.531  1.00  0.00              
ATOM    125  N   SER    32      55.175  41.682  79.550  1.00  0.00              
ATOM    126  CA  SER    32      53.922  41.415  78.906  1.00  0.00              
ATOM    127  C   SER    32      53.776  42.667  78.076  1.00  0.00              
ATOM    128  O   SER    32      53.823  43.766  78.614  1.00  0.00              
ATOM    129  N   SER    33      53.739  42.497  76.766  1.00  0.00              
ATOM    130  CA  SER    33      53.639  43.619  75.843  1.00  0.00              
ATOM    131  C   SER    33      52.242  43.657  75.290  1.00  0.00              
ATOM    132  O   SER    33      51.711  42.645  74.822  1.00  0.00              
ATOM    133  N   ILE    34      51.646  44.833  75.320  1.00  0.00              
ATOM    134  CA  ILE    34      50.321  45.013  74.781  1.00  0.00              
ATOM    135  C   ILE    34      50.391  45.833  73.498  1.00  0.00              
ATOM    136  O   ILE    34      51.348  46.572  73.255  1.00  0.00              
ATOM    137  N   ASP    35      49.390  45.690  72.654  1.00  0.00              
ATOM    138  CA  ASP    35      49.383  46.438  71.408  1.00  0.00              
ATOM    139  C   ASP    35      49.472  47.928  71.644  1.00  0.00              
ATOM    140  O   ASP    35      49.973  48.659  70.807  1.00  0.00              
ATOM    141  N   LEU    36      49.011  48.372  72.805  1.00  0.00              
ATOM    142  CA  LEU    36      49.031  49.787  73.183  1.00  0.00              
ATOM    143  C   LEU    36      50.446  50.258  73.397  1.00  0.00              
ATOM    144  O   LEU    36      50.732  51.460  73.374  1.00  0.00              
ATOM    145  N   ASN    37      51.341  49.299  73.590  1.00  0.00              
ATOM    146  CA  ASN    37      52.709  49.645  73.871  1.00  0.00              
ATOM    147  C   ASN    37      52.898  49.590  75.382  1.00  0.00              
ATOM    148  O   ASN    37      54.007  49.760  75.876  1.00  0.00              
ATOM    149  N   SER    38      51.817  49.402  76.132  1.00  0.00              
ATOM    150  CA  SER    38      51.963  49.290  77.566  1.00  0.00              
ATOM    151  C   SER    38      52.566  47.948  77.770  1.00  0.00              
ATOM    152  O   SER    38      52.268  46.975  77.054  1.00  0.00              
ATOM    153  N   VAL    39      53.472  47.907  78.716  1.00  0.00              
ATOM    154  CA  VAL    39      54.131  46.670  79.075  1.00  0.00              
ATOM    155  C   VAL    39      53.992  46.475  80.606  1.00  0.00              
ATOM    156  O   VAL    39      53.663  47.403  81.352  1.00  0.00              
ATOM    157  N   ILE    40      56.262  44.414  83.384  1.00  0.00              
ATOM    158  CA  ILE    40      57.430  43.598  83.637  1.00  0.00              
ATOM    159  C   ILE    40      57.350  42.994  85.042  1.00  0.00              
ATOM    160  O   ILE    40      57.063  43.679  86.018  1.00  0.00              
ATOM    161  N   GLU    41      57.601  41.700  85.129  1.00  0.00              
ATOM    162  CA  GLU    41      57.560  40.999  86.391  1.00  0.00              
ATOM    163  C   GLU    41      58.698  40.003  86.377  1.00  0.00              
ATOM    164  O   GLU    41      59.336  39.806  85.355  1.00  0.00              
ATOM    165  N   ASN    42      58.990  39.421  87.530  1.00  0.00              
ATOM    166  CA  ASN    42      60.060  38.444  87.614  1.00  0.00              
ATOM    167  C   ASN    42      61.355  39.058  88.086  1.00  0.00              
ATOM    168  O   ASN    42      62.197  38.371  88.654  1.00  0.00              
ATOM    169  N   VAL    43      61.510  40.357  87.854  1.00  0.00              
ATOM    170  CA  VAL    43      62.721  41.063  88.238  1.00  0.00              
ATOM    171  C   VAL    43      62.672  41.480  89.705  1.00  0.00              
ATOM    172  O   VAL    43      61.648  41.919  90.196  1.00  0.00              
ATOM    173  N   ASP    44      63.799  41.348  90.389  1.00  0.00              
ATOM    174  CA  ASP    44      63.881  41.700  91.782  1.00  0.00              
ATOM    175  C   ASP    44      64.487  43.068  91.964  1.00  0.00              
ATOM    176  O   ASP    44      64.765  43.472  93.090  1.00  0.00              
ATOM    177  N   GLY    45      64.649  43.797  90.860  1.00  0.00              
ATOM    178  CA  GLY    45      65.199  45.154  90.898  1.00  0.00              
ATOM    179  C   GLY    45      64.699  45.950  89.715  1.00  0.00              
ATOM    180  O   GLY    45      64.424  45.400  88.653  1.00  0.00              
ATOM    181  N   SER    46      64.610  47.255  89.901  1.00  0.00              
ATOM    182  CA  SER    46      64.135  48.118  88.854  1.00  0.00              
ATOM    183  C   SER    46      65.118  48.136  87.714  1.00  0.00              
ATOM    184  O   SER    46      64.735  48.260  86.552  1.00  0.00              
ATOM    185  N   LEU    47      66.389  48.012  88.065  1.00  0.00              
ATOM    186  CA  LEU    47      67.447  48.029  87.095  1.00  0.00              
ATOM    187  C   LEU    47      67.311  46.817  86.202  1.00  0.00              
ATOM    188  O   LEU    47      67.497  46.897  84.997  1.00  0.00              
ATOM    189  N   LYS    48      66.977  45.685  86.790  1.00  0.00              
ATOM    190  CA  LYS    48      66.853  44.478  86.003  1.00  0.00              
ATOM    191  C   LYS    48      65.636  44.527  85.097  1.00  0.00              
ATOM    192  O   LYS    48      65.667  44.016  83.984  1.00  0.00              
ATOM    193  N   TRP    49      64.583  45.165  85.597  1.00  0.00              
ATOM    194  CA  TRP    49      63.335  45.340  84.881  1.00  0.00              
ATOM    195  C   TRP    49      63.662  46.184  83.688  1.00  0.00              
ATOM    196  O   TRP    49      63.283  45.874  82.565  1.00  0.00              
ATOM    197  N   GLN    50      64.356  47.277  83.952  1.00  0.00              
ATOM    198  CA  GLN    50      64.741  48.172  82.907  1.00  0.00              
ATOM    199  C   GLN    50      65.593  47.472  81.858  1.00  0.00              
ATOM    200  O   GLN    50      65.419  47.709  80.673  1.00  0.00              
END
