PFRMAT TS 
TARGET T0052 
AUTHOR 3526-2583-5918 
REMARK Second model. Assembly Energy = -365.8 kT 
METHOD 
METHOD GENERAL: Ab initio folding using Monte Carlo simulations driven by restraints 
METHOD derived from multiple sequence alignments. Both secondary and tertiary 
METHOD restraints are derived from multiple sequence alignments. Secondary 
METHOD restraints obtained from a prediction of secondary structure. Tertiary 
METHOD restraints are obtained on the form of contact map prediction by a 
METHOD combination of multivariare statistical analysis and inverse folding. 
METHOD The predictions are incorporated as harmonic restraint penalty functions 
METHOD in a reduced protein model of two interacting particles per residue 
METHOD (one mimicking the backbone, the other one the side chain). Interaction 
METHOD between the particles is given by a statistical potential derived from 
METHOD the protein data base, suplemented by the restraint function. Conformational 
METHOD sampling is carried out on a discretized underlying lattice by a Monte Carlo 
METHOD simulated annealing procedure. 
METHOD DETAILED: Initial screening for sequences carried out with BLAST on the 
METHOD trEMBL database. Final multiple alignment done with CLUSTALW. Prediction 
METHOD of secondary structure using the method of Rylewski & Godzik. The prediction 
METHOD of contacts was done using DRACULA. Folding simulations were performed with 
METHOD MONSSTER. All atom model created with MODELLER from the predicted CA trace. 
METHOD 
MODEL  2 
PARENT N/A 
ATOM      2  CA  LEU     1      14.874  10.477   7.015  1.00  5.00 
ATOM     10  CA  GLY     2      13.530   9.761  10.396  1.00  5.00 
ATOM     14  CA  LYS     3      11.999  13.073  10.144  1.00  5.00 
ATOM     23  CA  PHE     4      10.060  10.922   7.731  1.00  5.00 
ATOM     34  CA  SER     5       6.816  12.458   9.119  1.00  5.00 
ATOM     40  CA  GLN     6       6.750  15.002   6.480  1.00  5.00 
ATOM     49  CA  THR     7       6.885  14.158   2.860  1.00  5.00 
ATOM     56  CA  CYS     8       6.894  10.559   2.833  1.00  5.00 
ATOM     62  CA  TYR     9       6.714   7.120   1.387  1.00  5.00 
ATOM     74  CA  ASN    10       5.883   4.992  -1.387  1.00  5.00 
ATOM     82  CA  SER    11       6.221   1.425  -0.102  1.00  5.00 
ATOM     88  CA  ALA    12       4.673   0.223  -3.286  1.00  5.00 
ATOM     93  CA  ILE    13       2.013  -2.337  -4.181  1.00  5.00 
ATOM    101  CA  GLN    14       3.127  -4.904  -6.682  1.00  5.00 
ATOM    110  CA  GLY    15       1.133  -2.856  -9.172  1.00  5.00 
ATOM    114  CA  SER    16      -2.489  -1.947  -8.614  1.00  5.00 
ATOM    120  CA  VAL    17      -2.342  -0.077  -5.662  1.00  5.00 
ATOM    127  CA  LEU    18      -1.564   0.833  -2.239  1.00  5.00 
ATOM    135  CA  THR    19       0.826   1.124   0.566  1.00  5.00 
ATOM    142  CA  SER    20       1.896   4.725   1.096  1.00  5.00 
ATOM    148  CA  THR    21       3.778   5.149   4.240  1.00  5.00 
ATOM    155  CA  CYS    22       3.287   8.544   5.793  1.00  5.00 
ATOM    161  CA  GLU    23       0.223  10.851   5.752  1.00  5.00 
ATOM    170  CA  ARG    24      -1.817  11.493   2.730  1.00  5.00 
ATOM    181  CA  THR    25      -2.048  12.018  -0.888  1.00  5.00 
ATOM    188  CA  ASN    26       1.357  13.209  -1.212  1.00  5.00 
ATOM    196  CA  GLY    27       1.628  12.738  -4.904  1.00  5.00 
ATOM    200  CA  GLY    28       3.830   9.946  -3.736  1.00  5.00 
ATOM    204  CA  TYR    29       6.615  11.267  -5.539  1.00  5.00 
ATOM    216  CA  ASN    30       7.075   9.271  -8.630  1.00  5.00 
ATOM    224  CA  THR    31       5.900   5.659  -8.697  1.00  5.00 
ATOM    231  CA  SER    32       4.275   5.187 -12.076  1.00  5.00 
ATOM    237  CA  SER    33       0.935   6.083 -11.039  1.00  5.00 
ATOM    243  CA  ILE    34       0.621   3.047  -9.249  1.00  5.00 
ATOM    251  CA  ASP    35      -0.781   1.653 -12.413  1.00  5.00 
ATOM    259  CA  LEU    36      -4.209   2.371 -11.271  1.00  5.00 
ATOM    267  CA  ASN    37      -4.530   5.651  -9.337  1.00  5.00 
ATOM    275  CA  SER    38      -3.725   5.927  -5.682  1.00  5.00 
ATOM    281  CA  VAL    39      -5.565   3.318  -3.923  1.00  5.00 
ATOM    288  CA  ILE    40      -5.219   4.254  -0.282  1.00  5.00 
ATOM    296  CA  GLU    41      -2.785   2.862   2.231  1.00  5.00 
ATOM    305  CA  ASN    42      -2.815   4.844   5.434  1.00  5.00 
ATOM    313  CA  VAL    43      -0.511   4.125   8.330  1.00  5.00 
ATOM    320  CA  ASP    44       0.449   6.106  11.372  1.00  5.00 
ATOM    328  CA  GLY    45       2.499   5.133  14.347  1.00  5.00 
ATOM    332  CA  SER    46       2.375   1.441  13.798  1.00  5.00 
ATOM    338  CA  LEU    47      -0.962  -0.091  13.067  1.00  5.00 
ATOM    346  CA  LYS    48      -0.187  -3.229  11.760  1.00  5.00 
ATOM    355  CA  TRP    49      -0.441  -2.354   8.240  1.00  5.00 
ATOM    369  CA  GLN    50      -4.055  -1.082   7.967  1.00  5.00 
ATOM    378  CA  PRO    51      -6.638  -1.077   6.973  1.00  5.00 
ATOM    385  CA  SER    52      -8.905  -4.064   6.319  1.00  5.00 
ATOM    391  CA  ASN    53      -9.471  -4.077   2.612  1.00  5.00 
ATOM    399  CA  PHE    54      -6.522  -2.768   0.685  1.00  5.00 
ATOM    410  CA  ILE    55      -3.826  -5.278   0.653  1.00  5.00 
ATOM    418  CA  GLU    56      -5.619  -8.090   2.039  1.00  5.00 
ATOM    427  CA  THR    57      -7.491  -6.850  -0.908  1.00  5.00 
ATOM    434  CA  CYS    58      -4.414  -6.708  -2.919  1.00  5.00 
ATOM    440  CA  ARG    59      -3.707 -10.276  -2.343  1.00  5.00 
ATOM    451  CA  ASN    60      -4.825 -11.005  -5.735  1.00  5.00 
ATOM    459  CA  THR    61      -1.582 -10.249  -7.395  1.00  5.00 
ATOM    466  CA  ASN    62       1.326 -12.479  -7.643  1.00  5.00 
ATOM    474  CA  LEU    63       2.729 -11.794  -4.249  1.00  5.00 
ATOM    482  CA  ALA    64       1.747 -14.972  -2.680  1.00  5.00 
ATOM    487  CA  GLY    65       0.432 -15.894   0.711  1.00  5.00 
ATOM    491  CA  SER    66      -1.577 -12.977   1.824  1.00  5.00 
ATOM    497  CA  SER    67      -0.915  -9.919   3.788  1.00  5.00 
ATOM    503  CA  GLU    68       2.558 -11.280   4.122  1.00  5.00 
ATOM    512  CA  LEU    69       3.185  -8.710   1.629  1.00  5.00 
ATOM    520  CA  ALA    70       3.462  -5.894   4.114  1.00  5.00 
ATOM    525  CA  ALA    71       6.379  -7.027   6.159  1.00  5.00 
ATOM    530  CA  GLU    72       8.415  -6.621   3.088  1.00  5.00 
ATOM    539  CA  CYS    73       6.624  -3.515   2.078  1.00  5.00 
ATOM    545  CA  LYS    74       6.442  -2.676   5.698  1.00  5.00 
ATOM    554  CA  THR    75      10.016  -2.722   6.667  1.00  5.00 
ATOM    561  CA  ARG    76      11.675  -1.989   3.484  1.00  5.00 
ATOM    572  CA  ALA    77      10.808   1.567   3.255  1.00  5.00 
ATOM    577  CA  GLN    78      12.339   1.100   6.567  1.00  5.00 
ATOM    586  CA  GLN    79      15.409   0.300   4.819  1.00  5.00 
ATOM    595  CA  PHE    80      15.699   3.799   3.624  1.00  5.00 
ATOM    606  CA  VAL    81      16.598   4.980   6.846  1.00  5.00 
ATOM    613  CA  SER    82      19.363   3.345   5.056  1.00  5.00 
ATOM    619  CA  THR    83      19.574   5.478   2.090  1.00  5.00 
ATOM    626  CA  LYS    84      21.149   7.645   4.559  1.00  5.00 
ATOM    635  CA  ILE    85      20.751  10.753   2.539  1.00  5.00 
ATOM    643  CA  ASN    86      19.239  13.651   4.217  1.00  5.00 
ATOM    651  CA  LEU    87      16.259  12.878   2.118  1.00  5.00 
ATOM    659  CA  ASP    88      16.631  14.201  -1.306  1.00  5.00 
ATOM    667  CA  ASP    89      13.044  13.585  -1.993  1.00  5.00 
ATOM    675  CA  HIS    90      13.352   9.879  -2.438  1.00  5.00 
ATOM    685  CA  ILE    91      10.908   7.026  -2.552  1.00  5.00 
ATOM    693  CA  ALA    92      11.732   3.368  -1.644  1.00  5.00 
ATOM    698  CA  ASN    93      10.043   0.881  -3.864  1.00  5.00 
ATOM    706  CA  ILE    94      10.007  -2.690  -3.199  1.00  5.00 
ATOM    714  CA  ASP    95      10.813  -4.980  -6.040  1.00  5.00 
ATOM    722  CA  GLY    96      13.170  -7.866  -6.233  1.00  5.00 
ATOM    726  CA  THR    97      13.008 -10.011  -3.190  1.00  5.00 
ATOM    733  CA  LEU    98       9.348  -9.882  -2.641  1.00  5.00 
ATOM    741  CA  LYS    99       9.385 -13.632  -2.394  1.00  5.00 
ATOM    750  CA  TYR   100      10.480 -15.086   0.839  1.00  5.00 
ATOM    762  CA  GLU   101      13.871 -16.219   1.776  1.00  5.00 
TER 
END 
