REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0053AL277_1_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : DEERFIELD 
REMARK  ---------------------------------------------------------- 
TARGET T0053  
AUTHOR 8120-3487-1357  
REMARK Matrix Used: 1aph: BS_30_25%  
REMARK Matrix Used: 1ubw: BS_90_10%   
REMARK Alignment Method Used: Quasi-Global Dynamic Programming  
METHOD Sequence-Structure alignment based on the environments  
METHOD published in: Deerfield, Holland-Minkley, Geigel, and   
METHOD Nicholas 1997. "Classification of the Environment of   
METHOD Protein Residues" J. Prot. Chem. 16:441-446.  
METHOD   
METHOD This test uses our latest (unpublished) environment   
METHOD classifications and extentions.  
MODEL  1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1aph_B 
ATOM      1  N   THR    12      29.233  33.143  34.211  1.00  0.00              
ATOM      2  CA  THR    12      29.789  34.314  33.484  1.00  0.00              
ATOM      3  C   THR    12      28.659  35.316  33.213  1.00  0.00              
ATOM      4  O   THR    12      28.833  36.389  32.604  1.00  0.00              
ATOM      5  N   SER    13      27.486  34.902  33.666  1.00  0.00              
ATOM      6  CA  SER    13      26.244  35.663  33.570  1.00  0.00              
ATOM      7  C   SER    13      26.094  36.589  34.777  1.00  0.00              
ATOM      8  O   SER    13      25.316  37.558  34.700  1.00  0.00              
ATOM      9  N   TYR    14      26.836  36.331  35.855  1.00  0.00              
ATOM     10  CA  TYR    14      26.671  37.197  37.050  1.00  0.00              
ATOM     11  C   TYR    14      27.641  38.359  37.197  1.00  0.00              
ATOM     12  O   TYR    14      28.510  38.409  38.091  1.00  0.00              
ATOM     13  N   HIS    15      27.414  39.313  36.305  1.00  0.00              
ATOM     14  CA  HIS    15      28.185  40.565  36.267  1.00  0.00              
ATOM     15  C   HIS    15      27.323  41.634  35.582  1.00  0.00              
ATOM     16  O   HIS    15      26.098  41.453  35.328  1.00  0.00              
ATOM     17  N   ASP    16      28.007  42.752  35.359  1.00  0.00              
ATOM     18  CA  ASP    16      27.420  43.939  34.691  1.00  0.00              
ATOM     19  C   ASP    16      27.689  43.600  33.220  1.00  0.00              
ATOM     20  O   ASP    16      28.899  43.482  32.906  1.00  0.00              
ATOM     21  N   THR    17      26.632  43.375  32.469  1.00  0.00              
ATOM     22  CA  THR    17      26.831  42.989  31.036  1.00  0.00              
ATOM     23  C   THR    17      26.222  44.098  30.236  1.00  0.00              
ATOM     24  O   THR    17      25.023  44.339  30.415  1.00  0.00              
ATOM     25  N   CYS    18      26.992  44.796  29.392  1.00  0.00              
ATOM     26  CA  CYS    18      26.382  45.881  28.617  1.00  0.00              
ATOM     27  C   CYS    18      26.747  45.745  27.124  1.00  0.00              
ATOM     28  O   CYS    18      27.746  45.147  26.741  1.00  0.00              
ATOM     29  N   GLU    19      25.825  46.280  26.330  1.00  0.00              
ATOM     30  CA  GLU    19      26.070  46.274  24.873  1.00  0.00              
ATOM     31  C   GLU    19      26.379  44.925  24.324  1.00  0.00              
ATOM     32  O   GLU    19      25.773  43.913  24.645  1.00  0.00              
ATOM     33  N   LYS    20      27.412  44.829  23.471  1.00  0.00              
ATOM     34  CA  LYS    20      27.752  43.574  22.806  1.00  0.00              
ATOM     35  C   LYS    20      28.004  42.519  23.853  1.00  0.00              
ATOM     36  O   LYS    20      27.746  41.336  23.545  1.00  0.00              
ATOM     37  N   ASN    21      28.389  42.935  25.044  1.00  0.00              
ATOM     38  CA  ASN    21      28.651  41.859  26.050  1.00  0.00              
ATOM     39  C   ASN    21      27.338  41.268  26.502  1.00  0.00              
ATOM     40  O   ASN    21      27.400  40.108  26.888  1.00  0.00              
ATOM     41  N   ILE    22      26.240  41.981  26.488  1.00  0.00              
ATOM     42  CA  ILE    22      25.014  41.356  27.008  1.00  0.00              
ATOM     43  C   ILE    22      24.388  40.576  25.904  1.00  0.00              
ATOM     44  O   ILE    22      23.768  39.547  26.165  1.00  0.00              
ATOM     45  N   VAL    23      24.572  41.055  24.673  1.00  0.00              
ATOM     46  CA  VAL    23      24.010  40.323  23.523  1.00  0.00              
ATOM     47  C   VAL    23      24.747  39.012  23.388  1.00  0.00              
ATOM     48  O   VAL    23      24.226  37.933  23.014  1.00  0.00              
ATOM     49  N   ALA    24      26.033  39.025  23.678  1.00  0.00              
ATOM     50  CA  ALA    24      26.754  37.751  23.552  1.00  0.00              
ATOM     51  C   ALA    24      26.274  36.809  24.614  1.00  0.00              
ATOM     52  O   ALA    24      26.143  35.593  24.397  1.00  0.00              
ATOM     53  N   CYS    25      25.948  37.317  25.819  1.00  0.00              
ATOM     54  CA  CYS    25      25.471  36.365  26.851  1.00  0.00              
ATOM     55  C   CYS    25      24.126  35.826  26.448  1.00  0.00              
ATOM     56  O   CYS    25      23.985  34.627  26.650  1.00  0.00              
ATOM     57  N   LEU    29      23.203  36.557  25.887  1.00  0.00              
ATOM     58  CA  LEU    29      21.882  36.057  25.485  1.00  0.00              
ATOM     59  C   LEU    29      22.071  34.985  24.452  1.00  0.00              
ATOM     60  O   LEU    29      21.464  33.911  24.413  1.00  0.00              
ATOM     61  N   ALA    30      23.032  35.206  23.558  1.00  0.00              
ATOM     62  CA  ALA    30      23.348  34.261  22.482  1.00  0.00              
ATOM     63  C   ALA    30      23.787  32.907  22.974  1.00  0.00              
ATOM     64  O   ALA    30      23.286  31.899  22.427  1.00  0.00              
ATOM     65  N   ALA    31      24.671  32.875  23.967  1.00  0.00              
ATOM     66  CA  ALA    31      25.172  31.607  24.487  1.00  0.00              
ATOM     67  C   ALA    31      24.168  30.905  25.372  1.00  0.00              
ATOM     68  O   ALA    31      24.089  29.674  25.300  1.00  0.00              
ATOM     69  N   SER    32      23.472  31.681  26.197  1.00  0.00              
ATOM     70  CA  SER    32      22.560  31.014  27.114  1.00  0.00              
ATOM     71  C   SER    32      21.341  30.563  26.395  1.00  0.00              
ATOM     72  O   SER    32      20.776  29.514  26.655  1.00  0.00              
ATOM     73  N   CYS    33      20.885  31.415  25.504  1.00  0.00              
ATOM     74  CA  CYS    33      19.640  31.085  24.761  1.00  0.00              
ATOM     75  C   CYS    33      19.930  30.012  23.748  1.00  0.00              
ATOM     76  O   CYS    33      18.925  29.256  23.539  1.00  0.00              
ATOM     77  N   PRO    34      21.053  29.839  23.080  1.00  0.00              
ATOM     78  CA  PRO    34      21.104  28.666  22.148  1.00  0.00              
ATOM     79  C   PRO    34      20.129  28.748  21.004  1.00  0.00              
ATOM     80  O   PRO    34      19.820  29.881  20.566  1.00  0.00              
ATOM     81  N   ASP    35      19.639  27.614  20.502  1.00  0.00              
ATOM     82  CA  ASP    35      18.707  27.704  19.353  1.00  0.00              
ATOM     83  C   ASP    35      17.325  28.259  19.617  1.00  0.00              
ATOM     84  O   ASP    35      16.592  28.500  18.641  1.00  0.00              
ATOM     85  N   ARG    36      16.958  28.560  20.832  1.00  0.00              
ATOM     86  CA  ARG    36      15.631  29.125  21.115  1.00  0.00              
ATOM     87  C   ARG    36      15.697  30.536  20.544  1.00  0.00              
ATOM     88  O   ARG    36      14.659  31.060  20.124  1.00  0.00              
ATOM     89  N   ASP    37      16.854  31.175  20.536  1.00  0.00              
ATOM     90  CA  ASP    37      16.928  32.585  20.024  1.00  0.00              
ATOM     91  C   ASP    37      16.583  33.551  21.137  1.00  0.00              
ATOM     92  O   ASP    37      16.337  33.114  22.293  1.00  0.00              
ATOM     93  N   LEU    38      16.506  34.876  20.966  1.00  0.00              
ATOM     94  CA  LEU    38      16.189  35.763  22.107  1.00  0.00              
ATOM     95  C   LEU    38      15.721  37.122  21.581  1.00  0.00              
ATOM     96  O   LEU    38      15.742  37.275  20.353  1.00  0.00              
ATOM     97  N   PHE    39      15.397  38.012  22.485  1.00  0.00              
ATOM     98  CA  PHE    39      15.021  39.355  21.892  1.00  0.00              
ATOM     99  C   PHE    39      15.832  40.364  22.675  1.00  0.00              
ATOM    100  O   PHE    39      15.976  40.181  23.879  1.00  0.00              
ATOM    101  N   ARG    40      16.416  41.388  22.102  1.00  0.00              
ATOM    102  CA  ARG    40      17.218  42.406  22.775  1.00  0.00              
ATOM    103  C   ARG    40      16.453  43.690  22.599  1.00  0.00              
ATOM    104  O   ARG    40      16.270  44.219  21.486  1.00  0.00              
ATOM    105  N   ALA    41      15.904  44.198  23.695  1.00  0.00              
ATOM    106  CA  ALA    41      15.099  45.467  23.545  1.00  0.00              
ATOM    107  C   ALA    41      15.647  46.356  24.624  1.00  0.00              
ATOM    108  O   ALA    41      15.230  46.285  25.784  1.00  0.00              
ATOM    109  N   PHE    42      16.596  47.156  24.218  1.00  0.00              
ATOM    110  CA  PHE    42      17.287  48.043  25.165  1.00  0.00              
ATOM    111  C   PHE    42      16.559  49.285  25.631  1.00  0.00              
ATOM    112  O   PHE    42      16.948  49.893  26.638  1.00  0.00              
ATOM    113  N   THR    43      15.536  49.660  24.898  1.00  0.00              
ATOM    114  CA  THR    43      14.703  50.827  25.128  1.00  0.00              
ATOM    115  C   THR    43      13.472  50.480  25.958  1.00  0.00              
ATOM    116  O   THR    43      12.486  51.221  25.814  1.00  0.00              
ATOM    117  N   SER    44      13.565  49.428  26.737  1.00  0.00              
ATOM    118  CA  SER    44      12.408  49.048  27.568  1.00  0.00              
ATOM    119  C   SER    44      11.979  47.633  27.217  1.00  0.00              
ATOM    120  O   SER    44      10.792  47.338  27.458  1.00  0.00              
END
