PFRMAT SS 
TARGET T0055 
AUTHOR 4438-1214-3249 
REMARK 
METHOD jackknife statistics from 680 chains of PDBselect list 
METHOD parameters for method: 19 residues scanning window 
METHOD                        structural triplets (N-terminal) 
METHOD                        2 solvent accessibility states 
METHOD                        20% accessibility cut-off 
METHOD NO multiple sequence alignment used in this prediction 
METHOD no pre or post-processing of prediction. 
METHOD Citation 1.  (use of multiple sequence alignment) 
METHOD M.J. Thompson & R.A. Goldstein (1997), 
METHOD Predicting Protein Secondary Structure 
METHOD Using Probabilistic Substitution Schemata, 
METHOD Protein Science 6, 1963-1975 
METHOD Citation 2.  (original theory development) 
METHOD M.J. Thompson & R.A. Goldstein (1996), 
METHOD Predicting Solvent Accessibility: Higher 
METHOD Accuracy Using Bayesian Statistics and 
METHOD Optimized Residue Substitution Classes, Proteins 25, 38-47 
MODEL 1 
 M  E  0.00 
 D  E  0.30 
 Y  E  0.63 
 E  E  0.65 
 I  E  0.70 
 L  E  0.71 
 F  E  0.60 
 S  C  0.60 
 D  C  0.75 
 E  C  0.73 
 T  C  0.62 
 M  C  0.55 
 N  C  0.59 
 Y  C  0.63 
 A  C  0.59 
 D  C  0.76 
 A  C  0.69 
 G  C  0.74 
 T  C  0.71 
 Y  C  0.47 
 C  C  0.55 
 Q  C  0.59 
 S  C  0.67 
 R  C  0.68 
 G  C  0.79 
 M  H  0.76 
 A  H  0.72 
 L  H  0.73 
 V  H  0.70 
 S  H  0.69 
 S  H  0.72 
 A  H  0.72 
 M  C  0.77 
 R  C  0.62 
 D  C  0.69 
 S  H  0.71 
 T  H  0.66 
 M  H  0.73 
 V  H  0.62 
 K  H  0.68 
 A  H  0.70 
 I  H  0.74 
 L  H  0.67 
 A  H  0.73 
 F  H  0.66 
 T  H  0.62 
 E  H  0.67 
 V  C  0.62 
 K  C  0.63 
 G  C  0.77 
 H  C  0.63 
 D  C  0.74 
 Y  C  0.59 
 W  E  0.67 
 V  E  0.69 
 G  C  0.65 
 A  C  0.70 
 D  C  0.76 
 N  C  0.79 
 L  C  0.62 
 Q  C  0.63 
 D  C  0.72 
 G  C  0.81 
 A  C  0.70 
 Y  C  0.62 
 N  C  0.67 
 F  E  0.55 
 L  E  0.59 
 W  C  0.48 
 N  C  0.67 
 D  C  0.78 
 G  C  0.81 
 V  C  0.66 
 S  C  0.59 
 L  C  0.59 
 P  C  0.80 
 T  C  0.75 
 D  C  0.73 
 S  C  0.71 
 D  C  0.75 
 L  C  0.63 
 W  C  0.48 
 S  C  0.61 
 P  C  0.81 
 N  C  0.90 
 E  C  0.71 
 P  C  0.81 
 S  C  0.83 
 N  C  0.74 
 P  C  0.84 
 Q  C  0.78 
 S  C  0.67 
 W  H  0.78 
 Q  H  0.76 
 L  H  0.69 
 C  H  0.72 
 V  H  0.52 
 Q  H  0.71 
 I  H  0.73 
 W  H  0.71 
 S  H  0.46 
 K  H  0.68 
 Y  C  0.63 
 N  C  0.67 
 L  C  0.62 
 L  C  0.56 
 D  C  0.67 
 D  C  0.79 
 V  C  0.62 
 G  C  0.65 
 C  C  0.69 
 G  C  0.70 
 G  C  0.79 
 A  C  0.70 
 R  C  0.64 
 R  E  0.45 
 V  E  0.62 
 I  E  0.72 
 C  E  0.67 
 E  C  0.65 
 K  E  0.52 
 E  E  0.43 
 L  C  0.59 
 D  E  0.62 
 D  C  0.79 
END 
