PFRMAT SS 
TARGET T0058 
AUTHOR 7936-3040-4355 
REMARK ---------------------------- 
METHOD Secondary structure prediction by bootstrapping a multiple 
METHOD sequence alignment (using a home-grown multiple sequence 
METHOD alignment method involving intermediate sequences) and getting 
METHOD a prediction from three different methods and taking the consensus. 
REMARK ---------------------------- 
MODEL 1 
M C 1.0 
A C 1.0 
N C 1.0 
E C 1.0 
L H 0.7 
T H 0.7 
W H 0.7 
H H 1.0 
D H 1.0 
V H 1.0 
L H 0.7 
A H 0.7 
E H 0.7 
E H 0.7 
K H 0.7 
Q H 0.7 
Q H 0.7 
P H 1.0 
Y H 1.0 
F H 1.0 
L H 1.0 
N H 1.0 
T H 1.0 
L H 1.0 
Q H 1.0 
T H 1.0 
V H 0.7 
A C 0.7 
S C 0.7 
E H 0.7 
R H 1.0 
Q H 0.7 
S C 0.7 
G C 0.7 
V C 1.0 
T C 1.0 
I C 1.0 
Y C 1.0 
P C 1.0 
P C 1.0 
Q C 1.0 
K C 1.0 
D C 1.0 
V H 0.3 
F H 0.3 
N E 0.7 
A H 0.3 
F H 0.3 
R H 0.3 
F C 0.7 
T C 1.0 
E C 1.0 
L C 1.0 
G C 1.0 
D C 0.7 
V E 0.7 
K E 1.0 
V E 1.0 
V E 1.0 
I E 1.0 
L E 1.0 
G C 0.7 
Q C 1.0 
D C 1.0 
P C 1.0 
Y C 1.0 
H C 1.0 
G C 1.0 
P C 1.0 
G C 1.0 
Q C 1.0 
A C 1.0 
H C 1.0 
G C 1.0 
L E 0.7 
A E 1.0 
F E 1.0 
S E 1.0 
V E 0.7 
R C 0.7 
P C 1.0 
G C 1.0 
I C 1.0 
A C 1.0 
I C 1.0 
P C 1.0 
P C 0.7 
S C 0.7 
L H 1.0 
L H 1.0 
N H 1.0 
M H 1.0 
Y H 1.0 
K H 1.0 
E H 1.0 
L H 1.0 
E H 1.0 
N H 0.7 
T C 0.7 
I C 1.0 
P C 1.0 
G C 1.0 
F C 1.0 
T C 1.0 
R C 1.0 
P C 1.0 
N C 1.0 
H C 1.0 
G C 0.7 
Y C 0.7 
L H 0.7 
E H 1.0 
S H 1.0 
W H 1.0 
A H 1.0 
R H 1.0 
Q H 0.7 
G H 0.7 
V H 0.7 
L H 0.7 
L H 0.7 
L H 0.7 
N H 0.7 
T H 0.7 
V H 0.7 
L H 0.7 
T E 0.7 
V E 0.7 
R E 0.7 
A H 0.3 
G C 1.0 
Q C 1.0 
A C 1.0 
H C 1.0 
S C 1.0 
H C 1.0 
A C 1.0 
S C 1.0 
L C 0.7 
G C 0.7 
W H 0.7 
E H 1.0 
T H 1.0 
F H 1.0 
T H 1.0 
D H 1.0 
K H 1.0 
V H 1.0 
I H 1.0 
S H 1.0 
L H 1.0 
I H 1.0 
N H 1.0 
Q H 1.0 
H H 0.7 
R C 0.7 
E C 1.0 
G C 0.7 
V E 0.7 
V E 0.7 
F E 0.7 
L E 0.7 
L E 0.7 
W H 0.3 
G C 0.7 
S C 0.7 
H H 0.7 
A H 1.0 
Q H 0.7 
K H 0.7 
K C 0.7 
G H 0.7 
A H 0.7 
I H 0.7 
I C 0.7 
D C 0.7 
K C 1.0 
Q C 1.0 
R C 1.0 
H C 1.0 
H E 1.0 
V E 1.0 
L E 1.0 
K E 1.0 
A E 0.7 
P C 1.0 
H C 1.0 
P C 1.0 
S C 1.0 
P C 1.0 
L C 1.0 
S C 1.0 
A C 1.0 
H C 1.0 
R C 1.0 
G C 1.0 
F C 1.0 
F C 1.0 
G C 1.0 
C C 1.0 
N C 0.7 
H H 0.7 
F H 1.0 
V H 1.0 
L H 1.0 
A H 1.0 
N H 1.0 
Q H 1.0 
W H 1.0 
L H 1.0 
E H 1.0 
Q H 1.0 
R C 0.7 
G C 1.0 
E C 1.0 
T C 1.0 
P C 1.0 
I C 1.0 
D C 1.0 
W C 0.7 
M C 1.0 
P C 1.0 
V C 1.0 
L C 1.0 
P C 1.0 
A C 1.0 
E C 1.0 
S C 1.0 
E C 1.0 
END 
