PFRMAT SS 
TARGET T0058 
AUTHOR 1751-3146-3362 
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded3-trained.net 
METHOD This is a 4-layer network, with  
METHOD	window	units 
METHOD	    9	    6 
METHOD	   11	    9 
METHOD	    3	    8 
METHOD	    7	    3 (1 EHL ) 
METHOD The input amino acid frequencies were determined from 
METHOD alignment t58.t98_2.a2m.gz 
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5) 
METHOD The weighting was determined by the posterior distribution 
METHOD after regularizing with recode3.20comp. 
METHOD Counts were regularized to probabilities using 
METHOD /projects/compbio/lib/recode3.20comp 
METHOD Total sequence weight for alignment was 4.9979 
METHOD 
MODEL 1 
M C 0.85 
A C 0.71 
N C 0.69 
E C 0.64 
L H 0.57 
T H 0.59 
W H 0.87 
H H 0.92 
D H 0.92 
V H 0.84 
L H 0.70 
A H 0.59 
E H 0.66 
E H 0.60 
K H 0.56 
Q H 0.51 
Q H 0.59 
P H 0.69 
Y H 0.71 
F H 0.80 
L H 0.89 
N H 0.91 
T H 0.91 
L H 0.94 
Q H 0.94 
T H 0.92 
V H 0.92 
A H 0.93 
S H 0.89 
E H 0.82 
R H 0.67 
Q C 0.53 
S C 0.57 
G C 0.52 
V C 0.43 
T E 0.58 
I E 0.56 
Y C 0.65 
P C 0.89 
P C 0.89 
Q C 0.57 
K H 0.57 
D H 0.55 
V H 0.57 
F H 0.52 
N H 0.40 
A H 0.39 
F H 0.36 
R C 0.36 
F C 0.47 
T C 0.67 
E C 0.77 
L C 0.82 
G C 0.86 
D C 0.67 
V E 0.77 
K E 0.97 
V E 0.99 
V E 1.00 
I E 0.99 
L E 0.97 
G E 0.75 
Q C 0.76 
D C 0.93 
P C 0.89 
Y C 0.82 
H C 0.86 
G C 0.89 
P C 0.89 
G C 0.81 
Q C 0.64 
A C 0.53 
H C 0.48 
G C 0.49 
L E 0.73 
A E 0.85 
F E 0.77 
S E 0.58 
V E 0.52 
R C 0.62 
P C 0.75 
G C 0.86 
I C 0.83 
A C 0.91 
I C 0.93 
P C 0.82 
P H 0.55 
S C 0.54 
L H 0.90 
L H 0.97 
N H 0.99 
M H 0.99 
Y H 0.99 
K H 0.98 
E H 0.98 
L H 0.95 
E H 0.83 
N H 0.50 
T C 0.76 
I C 0.88 
P C 0.92 
G C 0.81 
F C 0.78 
T C 0.76 
R C 0.77 
P C 0.91 
N C 0.90 
H C 0.76 
G C 0.72 
Y C 0.66 
L H 0.78 
E H 0.94 
S H 0.98 
W H 0.98 
A H 0.98 
R H 0.98 
Q H 0.96 
G H 0.87 
V H 0.65 
L E 0.56 
L E 0.82 
L E 0.72 
N C 0.55 
T C 0.50 
V E 0.69 
L E 0.83 
T E 0.89 
V E 0.86 
R E 0.75 
A E 0.48 
G C 0.80 
Q C 0.83 
A C 0.76 
H C 0.75 
S C 0.69 
H C 0.56 
A C 0.58 
S C 0.52 
L C 0.55 
G C 0.54 
W H 0.75 
E H 0.84 
T H 0.88 
F H 0.81 
T H 0.91 
D H 0.96 
K H 0.98 
V H 0.98 
I H 0.99 
S H 0.99 
L H 0.97 
I H 0.97 
N H 0.95 
Q H 0.91 
H H 0.69 
R C 0.55 
E C 0.84 
G C 0.69 
V C 0.38 
V E 0.50 
F E 0.48 
L E 0.49 
L E 0.44 
W C 0.38 
G H 0.48 
S H 0.65 
H H 0.76 
A H 0.77 
Q H 0.70 
K H 0.59 
K H 0.46 
G C 0.42 
A C 0.41 
I C 0.42 
I C 0.58 
D C 0.82 
K C 0.84 
Q C 0.86 
R C 0.68 
H E 0.63 
H E 0.89 
V E 0.95 
L E 0.94 
K E 0.88 
A E 0.58 
P C 0.82 
H C 0.89 
P C 0.95 
S C 0.96 
P C 0.81 
L C 0.62 
S C 0.67 
A C 0.65 
H C 0.61 
R C 0.59 
G C 0.65 
F C 0.59 
F C 0.66 
G C 0.78 
C C 0.83 
N C 0.68 
H H 0.56 
F H 0.78 
V H 0.90 
L H 0.90 
A H 0.94 
N H 0.96 
Q H 0.96 
W H 0.95 
L H 0.93 
E H 0.85 
Q H 0.65 
R C 0.82 
G C 0.88 
E C 0.83 
T C 0.76 
P C 0.58 
I E 0.47 
D E 0.53 
W E 0.58 
M E 0.58 
P E 0.50 
V C 0.49 
L C 0.64 
P C 0.75 
A C 0.76 
E C 0.78 
S C 0.80 
E C 0.84 
END 
