REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0059AL166_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : SB-FOLD 
REMARK  ---------------------------------------------------------- 
TARGET T0059  
AUTHOR 7397-8542-2481  
METHOD Sequences from converged PSI-BLAST search of the nr database were   
METHOD aligned in pileup, adjusted manually, and submitted to the JPRED server.  
METHOD The obtained secondary structure prediction strongly indicated an  
METHOD OB-fold.  This assignment was supported by the occurance of the SMD3  
METHOD domain in a RNA-binding protein.  A superposition of OB-structures  
METHOD from the pdb was compared to the fssp file for staphylococcal nuclease  
METHOD and conserved hydrophobic positions were identified.  The SMD3 domain  
METHOD was fitted to the cold shock protein template by maximum overlap of  
METHOD the conserved hydrophobic positions.  
MODEL  1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1mjc 
ATOM      1  N   LYS     8      14.210  24.950  39.381  1.00  0.00              
ATOM      2  CA  LYS     8      13.987  25.698  38.130  1.00  0.00              
ATOM      3  C   LYS     8      13.858  24.804  36.906  1.00  0.00              
ATOM      4  O   LYS     8      13.798  23.564  36.982  1.00  0.00              
ATOM      5  N   VAL     9      13.802  25.416  35.730  1.00  0.00              
ATOM      6  CA  VAL     9      13.710  24.742  34.442  1.00  0.00              
ATOM      7  C   VAL     9      15.151  24.671  33.917  1.00  0.00              
ATOM      8  O   VAL     9      15.458  24.974  32.766  1.00  0.00              
ATOM      9  N   LEU    10      16.035  24.280  34.811  1.00  0.00              
ATOM     10  CA  LEU    10      17.460  24.128  34.531  1.00  0.00              
ATOM     11  C   LEU    10      17.760  22.638  34.351  1.00  0.00              
ATOM     12  O   LEU    10      17.328  21.796  35.142  1.00  0.00              
ATOM     13  N   HIS    11      18.507  22.381  33.304  1.00  0.00              
ATOM     14  CA  HIS    11      18.958  21.022  32.935  1.00  0.00              
ATOM     15  C   HIS    11      20.341  20.854  33.573  1.00  0.00              
ATOM     16  O   HIS    11      21.041  21.819  33.892  1.00  0.00              
ATOM     17  N   GLU    12      20.750  19.643  33.798  1.00  0.00              
ATOM     18  CA  GLU    12      22.092  19.382  34.362  1.00  0.00              
ATOM     19  C   GLU    12      22.806  18.608  33.249  1.00  0.00              
ATOM     20  O   GLU    12      22.191  18.029  32.331  1.00  0.00              
ATOM     21  N   ALA    13      24.111  18.605  33.293  1.00  0.00              
ATOM     22  CA  ALA    13      24.906  17.886  32.277  1.00  0.00              
ATOM     23  C   ALA    13      26.382  17.874  32.687  1.00  0.00              
ATOM     24  O   ALA    13      26.694  18.286  33.791  1.00  0.00              
ATOM     25  N   GLU    14      27.223  17.419  31.803  1.00  0.00              
ATOM     26  CA  GLU    14      28.671  17.339  32.005  1.00  0.00              
ATOM     27  C   GLU    14      29.383  18.068  30.910  1.00  0.00              
ATOM     28  O   GLU    14      28.882  17.912  29.796  1.00  0.00              
ATOM     29  N   GLY    15      30.466  18.746  31.125  1.00  0.00              
ATOM     30  CA  GLY    15      31.222  19.420  30.035  1.00  0.00              
ATOM     31  C   GLY    15      31.909  18.302  29.227  1.00  0.00              
ATOM     32  O   GLY    15      32.708  17.494  29.758  1.00  0.00              
ATOM     33  N   HIS    16      31.610  18.237  27.940  1.00  0.00              
ATOM     34  CA  HIS    16      32.125  17.280  26.971  1.00  0.00              
ATOM     35  C   HIS    16      33.528  17.775  26.696  1.00  0.00              
ATOM     36  O   HIS    16      34.481  17.013  26.862  1.00  0.00              
ATOM     37  N   ILE    17      33.652  19.030  26.332  1.00  0.00              
ATOM     38  CA  ILE    17      34.998  19.635  26.091  1.00  0.00              
ATOM     39  C   ILE    17      34.851  21.138  26.196  1.00  0.00              
ATOM     40  O   ILE    17      33.699  21.618  26.122  1.00  0.00              
ATOM     41  N   VAL    18      35.953  21.862  26.374  1.00  0.00              
ATOM     42  CA  VAL    18      35.817  23.332  26.442  1.00  0.00              
ATOM     43  C   VAL    18      37.114  23.913  25.858  1.00  0.00              
ATOM     44  O   VAL    18      38.102  23.524  26.494  1.00  0.00              
ATOM     45  N   THR    19      37.082  24.714  24.805  1.00  0.00              
ATOM     46  CA  THR    19      38.312  25.273  24.243  1.00  0.00              
ATOM     47  C   THR    19      38.498  26.657  24.848  1.00  0.00              
ATOM     48  O   THR    19      37.877  27.568  24.307  1.00  0.00              
ATOM     49  N   VAL    27      34.621  28.489  23.907  1.00  0.00              
ATOM     50  CA  VAL    27      33.334  27.763  23.692  1.00  0.00              
ATOM     51  C   VAL    27      33.592  26.253  23.840  1.00  0.00              
ATOM     52  O   VAL    27      34.770  25.850  23.787  1.00  0.00              
ATOM     53  N   TYR    28      32.473  25.535  23.917  1.00  0.00              
ATOM     54  CA  TYR    28      32.600  24.059  24.031  1.00  0.00              
ATOM     55  C   TYR    28      31.184  23.480  23.985  1.00  0.00              
ATOM     56  O   TYR    28      30.287  24.180  23.527  1.00  0.00              
ATOM     57  N   ARG    29      31.087  22.251  24.462  1.00  0.00              
ATOM     58  CA  ARG    29      29.816  21.523  24.494  1.00  0.00              
ATOM     59  C   ARG    29      29.617  20.873  25.845  1.00  0.00              
ATOM     60  O   ARG    29      30.577  20.528  26.519  1.00  0.00              
ATOM     61  N   GLY    30      28.363  20.712  26.148  1.00  0.00              
ATOM     62  CA  GLY    30      27.756  20.102  27.301  1.00  0.00              
ATOM     63  C   GLY    30      26.904  18.920  26.791  1.00  0.00              
ATOM     64  O   GLY    30      26.203  19.085  25.813  1.00  0.00              
ATOM     65  N   LYS    31      27.000  17.821  27.476  1.00  0.00              
ATOM     66  CA  LYS    31      26.232  16.583  27.242  1.00  0.00              
ATOM     67  C   LYS    31      25.137  16.621  28.340  1.00  0.00              
ATOM     68  O   LYS    31      25.425  16.464  29.533  1.00  0.00              
ATOM     69  N   LEU    32      23.901  16.865  27.929  1.00  0.00              
ATOM     70  CA  LEU    32      22.773  16.965  28.854  1.00  0.00              
ATOM     71  C   LEU    32      22.483  15.639  29.489  1.00  0.00              
ATOM     72  O   LEU    32      22.665  14.648  28.804  1.00  0.00              
ATOM     73  N   ILE    33      22.049  15.600  30.694  1.00  0.00              
ATOM     74  CA  ILE    33      21.734  14.350  31.387  1.00  0.00              
ATOM     75  C   ILE    33      20.505  13.680  30.800  1.00  0.00              
ATOM     76  O   ILE    33      20.331  12.497  31.183  1.00  0.00              
ATOM     77  N   GLU    34      19.723  14.290  29.962  1.00  0.00              
ATOM     78  CA  GLU    34      18.531  13.605  29.403  1.00  0.00              
ATOM     79  C   GLU    34      18.819  12.839  28.121  1.00  0.00              
ATOM     80  O   GLU    34      17.868  12.367  27.465  1.00  0.00              
ATOM     81  N   ALA    35      20.047  12.700  27.691  1.00  0.00              
ATOM     82  CA  ALA    35      20.456  11.995  26.478  1.00  0.00              
ATOM     83  C   ALA    35      20.201  12.771  25.219  1.00  0.00              
ATOM     84  O   ALA    35      20.389  12.250  24.104  1.00  0.00              
ATOM     85  N   GLU    36      19.770  14.015  25.294  1.00  0.00              
ATOM     86  CA  GLU    36      19.488  14.870  24.124  1.00  0.00              
ATOM     87  C   GLU    36      20.818  15.396  23.568  1.00  0.00              
ATOM     88  O   GLU    36      21.856  15.303  24.236  1.00  0.00              
ATOM     89  N   ASP    37      20.788  15.929  22.368  1.00  0.00              
ATOM     90  CA  ASP    37      21.891  16.506  21.604  1.00  0.00              
ATOM     91  C   ASP    37      22.786  17.424  22.454  1.00  0.00              
ATOM     92  O   ASP    37      22.277  18.163  23.290  1.00  0.00              
ATOM     93  N   ASN    38      24.084  17.376  22.189  1.00  0.00              
ATOM     94  CA  ASN    38      25.093  18.193  22.897  1.00  0.00              
ATOM     95  C   ASN    38      24.691  19.668  22.709  1.00  0.00              
ATOM     96  O   ASN    38      24.223  20.045  21.631  1.00  0.00              
ATOM     97  N   MET    39      24.915  20.420  23.776  1.00  0.00              
ATOM     98  CA  MET    39      24.567  21.836  23.795  1.00  0.00              
ATOM     99  C   MET    39      25.804  22.711  23.757  1.00  0.00              
ATOM    100  O   MET    39      26.664  22.525  24.624  1.00  0.00              
ATOM    101  N   ASN    40      25.809  23.632  22.844  1.00  0.00              
ATOM    102  CA  ASN    40      26.907  24.614  22.694  1.00  0.00              
ATOM    103  C   ASN    40      26.990  25.506  23.922  1.00  0.00              
ATOM    104  O   ASN    40      25.909  25.973  24.330  1.00  0.00              
ATOM    105  N   CYS    41      28.165  25.787  24.475  1.00  0.00              
ATOM    106  CA  CYS    41      28.225  26.715  25.607  1.00  0.00              
ATOM    107  C   CYS    41      29.269  27.777  25.143  1.00  0.00              
ATOM    108  O   CYS    41      30.362  27.429  24.654  1.00  0.00              
ATOM    109  N   GLN    42      28.947  29.042  25.317  1.00  0.00              
ATOM    110  CA  GLN    42      29.825  30.169  24.991  1.00  0.00              
ATOM    111  C   GLN    42      30.420  30.672  26.309  1.00  0.00              
ATOM    112  O   GLN    42      29.661  30.586  27.287  1.00  0.00              
ATOM    113  N   MET    43      31.651  31.164  26.400  1.00  0.00              
ATOM    114  CA  MET    43      32.164  31.599  27.704  1.00  0.00              
ATOM    115  C   MET    43      31.233  32.636  28.344  1.00  0.00              
ATOM    116  O   MET    43      31.117  32.684  29.583  1.00  0.00              
ATOM    117  N   SER    44      30.630  33.496  27.517  1.00  0.00              
ATOM    118  CA  SER    44      29.762  34.573  28.019  1.00  0.00              
ATOM    119  C   SER    44      28.526  34.032  28.713  1.00  0.00              
ATOM    120  O   SER    44      27.958  34.911  29.413  1.00  0.00              
ATOM    121  N   ASN    45      28.117  32.792  28.624  1.00  0.00              
ATOM    122  CA  ASN    45      26.985  32.194  29.281  1.00  0.00              
ATOM    123  C   ASN    45      27.341  31.719  30.683  1.00  0.00              
ATOM    124  O   ASN    45      26.383  31.366  31.379  1.00  0.00              
ATOM    125  N   ILE    46      28.585  31.662  31.120  1.00  0.00              
ATOM    126  CA  ILE    46      29.024  31.197  32.410  1.00  0.00              
ATOM    127  C   ILE    46      28.979  32.293  33.492  1.00  0.00              
ATOM    128  O   ILE    46      29.397  33.440  33.266  1.00  0.00              
ATOM    129  N   THR    47      28.489  31.783  34.617  1.00  0.00              
ATOM    130  CA  THR    47      28.372  32.598  35.851  1.00  0.00              
ATOM    131  C   THR    47      29.844  32.801  36.298  1.00  0.00              
ATOM    132  O   THR    47      30.573  32.083  36.993  1.00  0.00              
ATOM    133  N   LEU    58      34.430  17.211  31.900  1.00  0.00              
ATOM    134  CA  LEU    58      33.980  16.339  32.959  1.00  0.00              
ATOM    135  C   LEU    58      33.272  16.992  34.119  1.00  0.00              
ATOM    136  O   LEU    58      32.749  16.224  34.952  1.00  0.00              
ATOM    137  N   GLU    59      33.246  18.296  34.169  1.00  0.00              
ATOM    138  CA  GLU    59      32.578  19.093  35.208  1.00  0.00              
ATOM    139  C   GLU    59      31.048  18.990  35.147  1.00  0.00              
ATOM    140  O   GLU    59      30.530  19.046  34.031  1.00  0.00              
ATOM    141  N   GLN    60      30.390  18.859  36.270  1.00  0.00              
ATOM    142  CA  GLN    60      28.906  18.778  36.294  1.00  0.00              
ATOM    143  C   GLN    60      28.455  20.220  36.209  1.00  0.00              
ATOM    144  O   GLN    60      29.053  21.084  36.868  1.00  0.00              
ATOM    145  N   VAL    61      27.489  20.603  35.428  1.00  0.00              
ATOM    146  CA  VAL    61      27.016  21.971  35.287  1.00  0.00              
ATOM    147  C   VAL    61      25.493  21.924  35.225  1.00  0.00              
ATOM    148  O   VAL    61      24.883  20.858  35.015  1.00  0.00              
ATOM    149  N   TYR    62      24.924  23.086  35.402  1.00  0.00              
ATOM    150  CA  TYR    62      23.460  23.309  35.352  1.00  0.00              
ATOM    151  C   TYR    62      23.412  24.550  34.468  1.00  0.00              
ATOM    152  O   TYR    62      24.244  25.463  34.459  1.00  0.00              
ATOM    153  N   ILE    63      22.378  24.539  33.658  1.00  0.00              
ATOM    154  CA  ILE    63      22.139  25.556  32.635  1.00  0.00              
ATOM    155  C   ILE    63      20.726  25.567  32.137  1.00  0.00              
ATOM    156  O   ILE    63      20.037  24.592  32.462  1.00  0.00              
ATOM    157  N   ARG    64      20.358  26.546  31.376  1.00  0.00              
ATOM    158  CA  ARG    64      19.003  26.574  30.796  1.00  0.00              
ATOM    159  C   ARG    64      19.253  26.357  29.321  1.00  0.00              
ATOM    160  O   ARG    64      20.368  26.690  28.851  1.00  0.00              
ATOM    161  N   GLY    65      18.313  25.827  28.589  1.00  0.00              
ATOM    162  CA  GLY    65      18.475  25.605  27.134  1.00  0.00              
ATOM    163  C   GLY    65      17.816  26.861  26.528  1.00  0.00              
ATOM    164  O   GLY    65      16.681  27.263  26.829  1.00  0.00              
ATOM    165  N   PHE    70      21.655  26.065  22.795  1.00  0.00              
ATOM    166  CA  PHE    70      22.688  26.755  23.544  1.00  0.00              
ATOM    167  C   PHE    70      22.384  26.772  25.034  1.00  0.00              
ATOM    168  O   PHE    70      21.209  26.778  25.445  1.00  0.00              
ATOM    169  N   LEU    71      23.430  26.784  25.819  1.00  0.00              
ATOM    170  CA  LEU    71      23.318  26.799  27.272  1.00  0.00              
ATOM    171  C   LEU    71      23.326  28.246  27.725  1.00  0.00              
ATOM    172  O   LEU    71      24.141  29.008  27.185  1.00  0.00              
ATOM    173  N   ILE    72      22.468  28.571  28.657  1.00  0.00              
ATOM    174  CA  ILE    72      22.383  29.927  29.234  1.00  0.00              
ATOM    175  C   ILE    72      22.486  29.658  30.741  1.00  0.00              
ATOM    176  O   ILE    72      22.227  28.533  31.205  1.00  0.00              
ATOM    177  N   LEU    73      22.867  30.669  31.511  1.00  0.00              
ATOM    178  CA  LEU    73      22.992  30.645  32.981  1.00  0.00              
ATOM    179  C   LEU    73      23.698  29.424  33.504  1.00  0.00              
ATOM    180  O   LEU    73      23.194  28.710  34.396  1.00  0.00              
ATOM    181  N   PRO    74      24.872  29.177  32.973  1.00  0.00              
ATOM    182  CA  PRO    74      25.709  28.020  33.327  1.00  0.00              
ATOM    183  C   PRO    74      26.342  28.224  34.690  1.00  0.00              
ATOM    184  O   PRO    74      27.095  29.174  34.927  1.00  0.00              
ATOM    185  N   ASP    75      26.014  27.250  35.495  1.00  0.00              
ATOM    186  CA  ASP    75      26.437  27.134  36.881  1.00  0.00              
ATOM    187  C   ASP    75      27.213  25.889  37.167  1.00  0.00              
ATOM    188  O   ASP    75      26.857  24.918  36.525  1.00  0.00              
END
