PFRMAT SS 
TARGET T0059 
AUTHOR 3403-1625-5531 
METHOD New Joint Method including SSthread 
METHOD (Prediction of protein Secondary Structure using Threading) 
METHOD K. Nishikawa and T. Noguchi:  
METHOD Methods in Enzymology, Vol.202, pp.31-44 (1991).  
METHOD M. Ito, Y. Matsuo and K. Nishikawa:  
METHOD Comput. Appl. Biosci. Vol.13, pp.415-423 (1997). 
MODEL  1 
M C 1.0 
S C 1.0 
I C 0.8 
G C 0.8 
V C 0.6 
P E 0.6 
I E 0.8 
K E 1.0 
V E 0.8 
L E 0.6 
H C 0.6 
E C 0.8 
A C 1.0 
E C 1.0 
G C 1.0 
H E 0.6 
I E 1.0 
V E 1.0 
T E 1.0 
C E 0.8 
E C 0.8 
T C 1.0 
N C 1.0 
T C 1.0 
G C 1.0 
E C 1.0 
V E 0.6 
Y E 0.6 
R E 0.1 
G E 0.1 
K E 0.1 
L E 0.4 
I E 0.2 
E E 0.4 
A C 0.8 
E C 0.8 
D C 0.8 
N C 0.8 
M C 0.6 
N C 0.8 
C C 0.8 
Q C 0.8 
M C 0.8 
S C 0.8 
N C 0.8 
I E 0.6 
T E 1.0 
V E 1.0 
T E 1.0 
Y E 1.0 
R C 1.0 
D C 1.0 
G C 1.0 
R C 0.8 
V E 0.2 
A E 0.2 
Q E 0.2 
L E 0.2 
E C 0.1 
Q C 0.1 
V E 0.2 
Y E 0.4 
I E 0.6 
R C 0.6 
G C 1.0 
S C 1.0 
K C 0.6 
I E 1.0 
R E 1.0 
F E 1.0 
L E 1.0 
I E 1.0 
L E 0.6 
P C 0.8 
D C 1.0 
END 
