PFRMAT SS 
TARGET T0060 
AUTHOR 7936-3040-4355 
REMARK ---------------------------- 
METHOD Secondary structure prediction by bootstrapping a multiple 
METHOD sequence alignment (using a home-grown multiple sequence 
METHOD alignment method involving intermediate sequences) and getting 
METHOD a prediction from three different methods and taking the consensus. 
REMARK ---------------------------- 
MODEL 1 
P C 1.0 
F C 0.7 
L E 0.7 
E E 0.7 
L E 0.7 
D C 1.0 
T C 1.0 
N C 1.0 
L C 1.0 
P C 1.0 
A C 1.0 
N C 1.0 
R C 1.0 
V C 1.0 
P C 1.0 
A H 0.7 
G H 1.0 
L H 1.0 
E H 1.0 
K H 1.0 
R H 1.0 
L H 1.0 
C H 1.0 
A H 1.0 
A H 1.0 
A H 1.0 
A H 1.0 
S H 1.0 
I H 1.0 
L C 1.0 
G C 1.0 
K C 1.0 
P C 1.0 
A C 1.0 
D C 1.0 
R E 1.0 
V E 1.0 
N E 1.0 
V E 1.0 
T E 1.0 
V E 1.0 
R C 0.7 
P C 1.0 
G C 1.0 
L E 0.7 
A E 1.0 
M E 1.0 
A E 1.0 
L E 1.0 
S C 1.0 
G C 1.0 
S C 1.0 
T C 1.0 
E C 1.0 
P C 1.0 
C C 1.0 
A E 0.7 
Q E 1.0 
L E 1.0 
S E 1.0 
I E 1.0 
S E 0.7 
S C 0.7 
I C 0.7 
G C 1.0 
V C 1.0 
V C 1.0 
G C 1.0 
T C 1.0 
A C 1.0 
E C 1.0 
D C 1.0 
N C 1.0 
R C 0.7 
S H 0.7 
H H 1.0 
S H 1.0 
A H 1.0 
H H 1.0 
F H 1.0 
F H 1.0 
E H 1.0 
F H 1.0 
L H 1.0 
T H 1.0 
K H 1.0 
E H 1.0 
L H 0.7 
A H 0.7 
L C 1.0 
G C 1.0 
Q C 1.0 
D C 1.0 
R E 1.0 
I E 1.0 
L E 1.0 
I E 1.0 
R E 1.0 
F E 1.0 
F C 1.0 
P C 1.0 
L C 1.0 
E C 1.0 
S C 1.0 
W C 1.0 
Q C 1.0 
I C 1.0 
G C 1.0 
K C 1.0 
I C 1.0 
G C 1.0 
T C 1.0 
V C 0.7 
M C 0.7 
T C 0.7 
F C 1.0 
L C 1.0 
END 
