PFRMAT SS 
TARGET  T0060 
AUTHOR 4438-1214-3249 
REMARK 
METHOD jackknife statistics from 680 chains of PDBselect list 
METHOD parameters for method: 19 residues scanning window 
METHOD                        structural triplets (N-terminal) 
METHOD                        2 solvent accessibility states 
METHOD                        20% accessibility cut-off 
METHOD NO multiple sequence alignment used in this prediction 
METHOD no pre or post-processing of prediction. 
METHOD Citation 1.  (use of multiple sequence alignment) 
METHOD M.J. Thompson & R.A. Goldstein (1997), 
METHOD Predicting Protein Secondary Structure 
METHOD Using Probabilistic Substitution Schemata, 
METHOD Protein Science 6, 1963-1975 
METHOD Citation 2.  (original theory development) 
METHOD M.J. Thompson & R.A. Goldstein (1996), 
METHOD Predicting Solvent Accessibility: Higher 
METHOD Accuracy Using Bayesian Statistics and 
METHOD Optimized Residue Substitution Classes, Proteins 25, 38-47 
MODEL 1 
 P  C  0.67 
 F  C  0.73 
 L  C  0.47 
 E  E  0.60 
 L  E  0.63 
 D  C  0.67 
 T  C  0.71 
 N  C  0.71 
 L  C  0.62 
 P  C  0.80 
 A  C  0.78 
 N  C  0.68 
 R  C  0.67 
 V  C  0.58 
 P  C  0.75 
 A  C  0.78 
 G  H  0.61 
 L  H  0.66 
 E  H  0.67 
 K  H  0.73 
 R  H  0.71 
 L  H  0.66 
 C  H  0.72 
 A  H  0.69 
 A  H  0.70 
 A  H  0.70 
 A  H  0.70 
 S  H  0.68 
 I  H  0.76 
 L  H  0.67 
 G  C  0.70 
 K  C  0.73 
 P  C  0.79 
 A  C  0.78 
 D  C  0.76 
 R  C  0.68 
 V  E  0.62 
 N  E  0.56 
 V  E  0.58 
 T  E  0.69 
 V  C  0.53 
 R  C  0.52 
 P  C  0.78 
 G  C  0.85 
 L  C  0.64 
 A  E  0.68 
 M  E  0.61 
 A  H  0.72 
 L  C  0.63 
 S  C  0.63 
 G  C  0.79 
 S  C  0.75 
 T  C  0.62 
 E  C  0.62 
 P  C  0.81 
 C  C  0.76 
 A  C  0.59 
 Q  C  0.64 
 L  C  0.59 
 S  E  0.66 
 I  E  0.60 
 S  C  0.56 
 S  E  0.55 
 I  E  0.60 
 G  E  0.66 
 V  E  0.55 
 V  E  0.70 
 G  C  0.65 
 T  C  0.71 
 A  C  0.59 
 E  C  0.67 
 D  C  0.81 
 N  C  0.79 
 R  C  0.67 
 S  C  0.67 
 H  C  0.68 
 S  C  0.64 
 A  H  0.72 
 H  H  0.60 
 F  H  0.63 
 F  H  0.65 
 E  H  0.67 
 F  H  0.66 
 L  H  0.72 
 T  H  0.64 
 K  H  0.73 
 E  H  0.72 
 L  H  0.70 
 A  H  0.73 
 L  C  0.63 
 G  C  0.70 
 Q  C  0.66 
 D  C  0.72 
 R  C  0.68 
 I  E  0.60 
 L  E  0.71 
 I  E  0.71 
 R  E  0.64 
 F  E  0.65 
 F  C  0.54 
 P  C  0.88 
 L  C  0.70 
 E  C  0.63 
 S  C  0.70 
 W  C  0.54 
 Q  C  0.47 
 I  C  0.53 
 G  C  0.59 
 K  C  0.73 
 I  C  0.60 
 G  C  0.59 
 T  E  0.62 
 V  E  0.65 
 M  E  0.72 
 T  E  0.52 
 F  E  0.63 
 L  E  0.59 
END 
