REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0061AL212_2 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : BRYANT 
REMARK  ---------------------------------------------------------- 
TARGET T0061  
REMARK =======================================================================  
AUTHOR 2738-1421-4442  
REMARK This prediction was prepared by Anna Panchenko, Aron Marchler-Bauer,  
REMARK and Steve Bryant, NCBI.  
REMARK =======================================================================  
METHOD Predictions were made with the potential and alignment model used in  
METHOD CASP1 and CASP2 predictions, as described by Madej et al. in Proteins  
METHOD 23:356-369, 1995. Convergence control has been added to the Gibbs-  
METHOD Sampling alignment model. In addition to contact-based threading  
METHOD potentials, PSSMs summarizing sequence conservation in the family  
METHOD represented by the template structure are used to score threading  
METHOD alignments. Threading "cores" summarizing the conserved substructure  
METHOD in the templates used for models below have been based on structure  
METHOD superpositions generated by VAST (Gibrat et al., Curr Opin Struct  
METHOD Biol 1996 Jun;6(3):377-385 ).  
METHOD The alignments have been calculated with the Gibbs Sampling threading  
METHOD engine. No single template has been identified in threading database  
METHOD searches with unambiguous scores/p-values. We therefore submit "NONE"  
METHOD as model no. 1, indicating that the automated search methods have not  
METHOD indicated a clearly favored template. Additional models represent   
METHOD top-scoring hits from threading database searches, models 2 and 3  
METHOD have been calculated using PSSM-based scoring, and models 4 and 5 with  
METHOD the contact-based threader.  
REMARK =======================================================================  
MODEL  2  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1akh_A 
ATOM      1  N   TRP    16      14.206  47.471   5.277  1.00  0.00              
ATOM      2  CA  TRP    16      14.689  46.123   5.703  1.00  0.00              
ATOM      3  C   TRP    16      13.391  45.440   6.150  1.00  0.00              
ATOM      4  O   TRP    16      12.647  46.020   6.970  1.00  0.00              
ATOM      5  N   THR    17      13.087  44.282   5.538  1.00  0.00              
ATOM      6  CA  THR    17      11.858  43.505   5.819  1.00  0.00              
ATOM      7  C   THR    17      11.609  43.355   7.307  1.00  0.00              
ATOM      8  O   THR    17      12.541  43.222   8.085  1.00  0.00              
ATOM      9  N   CYS    18      10.345  43.342   7.721  1.00  0.00              
ATOM     10  CA  CYS    18      10.019  43.209   9.144  1.00  0.00              
ATOM     11  C   CYS    18      10.628  41.960   9.776  1.00  0.00              
ATOM     12  O   CYS    18      11.009  41.956  10.959  1.00  0.00              
ATOM     13  N   GLU    19      10.763  40.912   8.975  1.00  0.00              
ATOM     14  CA  GLU    19      11.342  39.690   9.484  1.00  0.00              
ATOM     15  C   GLU    19      12.872  39.821   9.456  1.00  0.00              
ATOM     16  O   GLU    19      13.539  39.393  10.417  1.00  0.00              
ATOM     17  N   ASP    20      13.414  40.498   8.428  1.00  0.00              
ATOM     18  CA  ASP    20      14.864  40.745   8.352  1.00  0.00              
ATOM     19  C   ASP    20      15.265  41.508   9.623  1.00  0.00              
ATOM     20  O   ASP    20      16.130  41.069  10.393  1.00  0.00              
ATOM     21  N   PHE    21      14.546  42.594   9.886  1.00  0.00              
ATOM     22  CA  PHE    21      14.780  43.425  11.048  1.00  0.00              
ATOM     23  C   PHE    21      14.732  42.620  12.330  1.00  0.00              
ATOM     24  O   PHE    21      15.405  42.938  13.327  1.00  0.00              
ATOM     25  N   LEU    22      13.898  41.596  12.326  1.00  0.00              
ATOM     26  CA  LEU    22      13.747  40.783  13.526  1.00  0.00              
ATOM     27  C   LEU    22      15.008  40.024  13.731  1.00  0.00              
ATOM     28  O   LEU    22      15.550  39.973  14.839  1.00  0.00              
ATOM     29  N   ALA    23      15.461  39.422  12.634  1.00  0.00              
ATOM     30  CA  ALA    23      16.669  38.628  12.629  1.00  0.00              
ATOM     31  C   ALA    23      17.818  39.471  13.162  1.00  0.00              
ATOM     32  O   ALA    23      18.425  39.093  14.167  1.00  0.00              
ATOM     33  N   VAL    24      18.052  40.637  12.544  1.00  0.00              
ATOM     34  CA  VAL    24      19.124  41.565  12.957  1.00  0.00              
ATOM     35  C   VAL    24      19.110  41.879  14.482  1.00  0.00              
ATOM     36  O   VAL    24      20.157  41.872  15.158  1.00  0.00              
ATOM     37  N   ASP    25      17.919  42.089  15.038  1.00  0.00              
ATOM     38  CA  ASP    25      17.770  42.334  16.477  1.00  0.00              
ATOM     39  C   ASP    25      18.136  41.081  17.237  1.00  0.00              
ATOM     40  O   ASP    25      18.701  41.165  18.323  1.00  0.00              
ATOM     41  N   GLU    26      17.719  39.922  16.710  1.00  0.00              
ATOM     42  CA  GLU    26      18.020  38.614  17.327  1.00  0.00              
ATOM     43  C   GLU    26      19.543  38.424  17.414  1.00  0.00              
ATOM     44  O   GLU    26      20.113  38.221  18.501  1.00  0.00              
ATOM     45  N   SER    27      20.186  38.580  16.258  1.00  0.00              
ATOM     46  CA  SER    27      21.629  38.469  16.139  1.00  0.00              
ATOM     47  C   SER    27      22.293  39.456  17.077  1.00  0.00              
ATOM     48  O   SER    27      23.292  39.113  17.729  1.00  0.00              
ATOM     49  N   PHE    28      21.734  40.672  17.141  1.00  0.00              
ATOM     50  CA  PHE    28      22.281  41.744  17.985  1.00  0.00              
ATOM     51  C   PHE    28      22.177  41.468  19.473  1.00  0.00              
ATOM     52  O   PHE    28      23.024  41.904  20.268  1.00  0.00              
ATOM     53  N   GLU    37      27.049  42.297  19.426  1.00  0.00              
ATOM     54  CA  GLU    37      26.927  43.659  18.963  1.00  0.00              
ATOM     55  C   GLU    37      27.839  43.955  17.764  1.00  0.00              
ATOM     56  O   GLU    37      27.631  44.930  17.058  1.00  0.00              
ATOM     57  N   ALA    38      28.849  43.122  17.527  1.00  0.00              
ATOM     58  CA  ALA    38      29.770  43.317  16.391  1.00  0.00              
ATOM     59  C   ALA    38      29.938  41.995  15.664  1.00  0.00              
ATOM     60  O   ALA    38      29.844  40.947  16.280  1.00  0.00              
ATOM     61  N   LEU    39      30.282  42.042  14.385  1.00  0.00              
ATOM     62  CA  LEU    39      30.387  40.824  13.609  1.00  0.00              
ATOM     63  C   LEU    39      31.512  40.734  12.574  1.00  0.00              
ATOM     64  O   LEU    39      31.593  41.580  11.669  1.00  0.00              
ATOM     65  N   ASN    40      32.284  39.648  12.597  1.00  0.00              
ATOM     66  CA  ASN    40      33.331  39.494  11.594  1.00  0.00              
ATOM     67  C   ASN    40      32.709  39.368  10.219  1.00  0.00              
ATOM     68  O   ASN    40      31.498  39.357  10.074  1.00  0.00              
ATOM     69  N   ASN    41      33.550  39.244   9.221  1.00  0.00              
ATOM     70  CA  ASN    41      33.105  39.160   7.873  1.00  0.00              
ATOM     71  C   ASN    41      32.186  37.989   7.569  1.00  0.00              
ATOM     72  O   ASN    41      31.178  38.171   6.885  1.00  0.00              
ATOM     73  N   LYS    42      32.578  36.783   8.012  1.00  0.00              
ATOM     74  CA  LYS    42      31.869  35.514   7.766  1.00  0.00              
ATOM     75  C   LYS    42      30.461  35.616   8.275  1.00  0.00              
ATOM     76  O   LYS    42      29.522  35.458   7.498  1.00  0.00              
ATOM     77  N   ASP    43      30.323  35.924   9.569  1.00  0.00              
ATOM     78  CA  ASP    43      29.011  36.146  10.228  1.00  0.00              
ATOM     79  C   ASP    43      28.171  37.191   9.426  1.00  0.00              
ATOM     80  O   ASP    43      27.082  36.882   8.937  1.00  0.00              
ATOM     81  N   LYS    44      28.690  38.414   9.291  1.00  0.00              
ATOM     82  CA  LYS    44      28.024  39.475   8.555  1.00  0.00              
ATOM     83  C   LYS    44      27.525  38.958   7.214  1.00  0.00              
ATOM     84  O   LYS    44      26.548  39.452   6.704  1.00  0.00              
ATOM     85  N   PRO    45      28.209  37.981   6.628  1.00  0.00              
ATOM     86  CA  PRO    45      27.819  37.408   5.328  1.00  0.00              
ATOM     87  C   PRO    45      26.626  36.504   5.500  1.00  0.00              
ATOM     88  O   PRO    45      25.712  36.476   4.676  1.00  0.00              
ATOM     89  N   GLU    46      26.691  35.687   6.536  1.00  0.00              
ATOM     90  CA  GLU    46      25.613  34.775   6.836  1.00  0.00              
ATOM     91  C   GLU    46      24.405  35.685   7.010  1.00  0.00              
ATOM     92  O   GLU    46      23.500  35.722   6.175  1.00  0.00              
ATOM     93  N   ASP    47      24.468  36.513   8.041  1.00  0.00              
ATOM     94  CA  ASP    47      23.402  37.430   8.336  1.00  0.00              
ATOM     95  C   ASP    47      22.892  38.170   7.100  1.00  0.00              
ATOM     96  O   ASP    47      21.682  38.269   6.903  1.00  0.00              
ATOM     97  N   ALA    48      23.774  38.671   6.248  1.00  0.00              
ATOM     98  CA  ALA    48      23.274  39.338   5.063  1.00  0.00              
ATOM     99  C   ALA    48      22.379  38.350   4.313  1.00  0.00              
ATOM    100  O   ALA    48      21.185  38.638   4.108  1.00  0.00              
ATOM    101  N   VAL    58      19.328  41.120   2.512  1.00  0.00              
ATOM    102  CA  VAL    58      19.899  42.455   2.277  1.00  0.00              
ATOM    103  C   VAL    58      21.399  42.265   2.026  1.00  0.00              
ATOM    104  O   VAL    58      21.924  41.164   2.287  1.00  0.00              
ATOM    105  N   THR    59      22.080  43.292   1.496  1.00  0.00              
ATOM    106  CA  THR    59      23.519  43.184   1.257  1.00  0.00              
ATOM    107  C   THR    59      24.304  43.186   2.559  1.00  0.00              
ATOM    108  O   THR    59      23.792  43.528   3.621  1.00  0.00              
ATOM    109  N   PRO    60      25.581  42.810   2.500  1.00  0.00              
ATOM    110  CA  PRO    60      26.289  42.845   3.781  1.00  0.00              
ATOM    111  C   PRO    60      26.535  44.313   4.178  1.00  0.00              
ATOM    112  O   PRO    60      26.765  44.628   5.361  1.00  0.00              
ATOM    113  N   ALA    61      26.498  45.218   3.188  1.00  0.00              
ATOM    114  CA  ALA    61      26.726  46.640   3.481  1.00  0.00              
ATOM    115  C   ALA    61      25.587  47.165   4.312  1.00  0.00              
ATOM    116  O   ALA    61      25.826  47.846   5.302  1.00  0.00              
ATOM    117  N   ILE    62      24.355  46.855   3.893  1.00  0.00              
ATOM    118  CA  ILE    62      23.168  47.242   4.622  1.00  0.00              
ATOM    119  C   ILE    62      23.248  46.685   6.032  1.00  0.00              
ATOM    120  O   ILE    62      22.889  47.358   7.003  1.00  0.00              
ATOM    121  N   VAL    63      23.668  45.435   6.176  1.00  0.00              
ATOM    122  CA  VAL    63      23.812  44.899   7.541  1.00  0.00              
ATOM    123  C   VAL    63      24.949  45.576   8.320  1.00  0.00              
ATOM    124  O   VAL    63      24.852  45.726   9.557  1.00  0.00              
ATOM    125  N   GLN    64      25.965  46.063   7.589  1.00  0.00              
ATOM    126  CA  GLN    64      27.085  46.787   8.194  1.00  0.00              
ATOM    127  C   GLN    64      26.561  48.071   8.835  1.00  0.00              
ATOM    128  O   GLN    64      26.779  48.341  10.033  1.00  0.00              
ATOM    129  N   ALA    65      25.876  48.875   8.024  1.00  0.00              
ATOM    130  CA  ALA    65      25.301  50.130   8.502  1.00  0.00              
ATOM    131  C   ALA    65      24.249  49.892   9.588  1.00  0.00              
ATOM    132  O   ALA    65      24.276  50.583  10.596  1.00  0.00              
ATOM    133  N   CYS    66      23.394  48.862   9.422  1.00  0.00              
ATOM    134  CA  CYS    66      22.370  48.506  10.411  1.00  0.00              
ATOM    135  C   CYS    66      22.965  48.340  11.792  1.00  0.00              
ATOM    136  O   CYS    66      22.408  48.810  12.788  1.00  0.00              
ATOM    137  N   THR    67      24.066  47.601  11.871  1.00  0.00              
ATOM    138  CA  THR    67      24.719  47.388  13.162  1.00  0.00              
ATOM    139  C   THR    67      25.377  48.642  13.661  1.00  0.00              
ATOM    140  O   THR    67      25.370  48.905  14.863  1.00  0.00              
ATOM    141  N   GLN    68      25.933  49.435  12.747  1.00  0.00              
ATOM    142  CA  GLN    68      26.571  50.659  13.184  1.00  0.00              
ATOM    143  C   GLN    68      25.532  51.541  13.849  1.00  0.00              
ATOM    144  O   GLN    68      25.698  51.897  15.021  1.00  0.00              
ATOM    145  N   ASP    69      24.411  51.780  13.161  1.00  0.00              
ATOM    146  CA  ASP    69      23.339  52.627  13.700  1.00  0.00              
ATOM    147  C   ASP    69      22.821  52.042  14.998  1.00  0.00              
ATOM    148  O   ASP    69      22.654  52.746  16.006  1.00  0.00              
ATOM    149  N   LYS    70      22.611  50.730  14.988  1.00  0.00              
ATOM    150  CA  LYS    70      22.121  50.044  16.164  1.00  0.00              
ATOM    151  C   LYS    70      23.022  50.366  17.326  1.00  0.00              
ATOM    152  O   LYS    70      22.578  50.907  18.298  1.00  0.00              
ATOM    153  N   GLN    71      24.315  50.145  17.175  1.00  0.00              
ATOM    154  CA  GLN    71      25.226  50.412  18.269  1.00  0.00              
ATOM    155  C   GLN    71      25.177  51.897  18.672  1.00  0.00              
ATOM    156  O   GLN    71      25.122  52.224  19.845  1.00  0.00              
ATOM    157  N   ALA    72      25.209  52.765  17.658  1.00  0.00              
ATOM    158  CA  ALA    72      25.206  54.226  17.762  1.00  0.00              
ATOM    159  C   ALA    72      23.993  54.818  18.450  1.00  0.00              
ATOM    160  O   ALA    72      24.073  55.878  19.085  1.00  0.00              
ATOM    161  N   ASN    73      22.844  54.192  18.223  1.00  0.00              
ATOM    162  CA  ASN    73      21.602  54.632  18.801  1.00  0.00              
ATOM    163  C   ASN    73      21.290  53.842  20.091  1.00  0.00              
ATOM    164  O   ASN    73      20.991  54.421  21.141  1.00  0.00              
ATOM    165  N   PHE    74      21.518  52.538  20.046  1.00  0.00              
ATOM    166  CA  PHE    74      21.301  51.646  21.181  1.00  0.00              
ATOM    167  C   PHE    74      22.353  50.510  21.223  1.00  0.00              
ATOM    168  O   PHE    74      23.302  50.604  22.046  1.00  0.00              
END
