REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0061AL212_3 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : BRYANT 
REMARK  ---------------------------------------------------------- 
TARGET T0061  
REMARK =======================================================================  
AUTHOR 2738-1421-4442  
REMARK This prediction was prepared by Anna Panchenko, Aron Marchler-Bauer,  
REMARK and Steve Bryant, NCBI.  
REMARK =======================================================================  
METHOD Predictions were made with the potential and alignment model used in  
METHOD CASP1 and CASP2 predictions, as described by Madej et al. in Proteins  
METHOD 23:356-369, 1995. Convergence control has been added to the Gibbs-  
METHOD Sampling alignment model. In addition to contact-based threading  
METHOD potentials, PSSMs summarizing sequence conservation in the family  
METHOD represented by the template structure are used to score threading  
METHOD alignments. Threading "cores" summarizing the conserved substructure  
METHOD in the templates used for models below have been based on structure  
METHOD superpositions generated by VAST (Gibrat et al., Curr Opin Struct  
METHOD Biol 1996 Jun;6(3):377-385 ).  
METHOD The alignments have been calculated with the Gibbs Sampling threading  
METHOD engine. No single template has been identified in threading database  
METHOD searches with unambiguous scores/p-values. We therefore submit "NONE"  
METHOD as model no. 1, indicating that the automated search methods have not  
METHOD indicated a clearly favored template. Additional models represent   
METHOD top-scoring hits from threading database searches, models 2 and 3  
METHOD have been calculated using PSSM-based scoring, and models 4 and 5 with  
METHOD the contact-based threader.  
REMARK =======================================================================  
MODEL  3  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1adr 
ATOM      1  N   VAL    13      17.946   3.084   7.788  1.00  0.00              
ATOM      2  CA  VAL    13      16.828   2.544   7.016  1.00  0.00              
ATOM      3  C   VAL    13      17.150   2.553   5.515  1.00  0.00              
ATOM      4  O   VAL    13      18.063   3.246   5.072  1.00  0.00              
ATOM      5  N   ASN    14      16.406   1.766   4.738  1.00  0.00              
ATOM      6  CA  ASN    14      16.399   1.792   3.280  1.00  0.00              
ATOM      7  C   ASN    14      14.936   1.914   2.850  1.00  0.00              
ATOM      8  O   ASN    14      14.429   1.109   2.068  1.00  0.00              
ATOM      9  N   SER    15      14.272   2.930   3.413  1.00  0.00              
ATOM     10  CA  SER    15      12.853   3.234   3.304  1.00  0.00              
ATOM     11  C   SER    15      11.982   2.117   3.893  1.00  0.00              
ATOM     12  O   SER    15      12.330   0.936   3.843  1.00  0.00              
ATOM     13  N   TRP    16      10.839   2.487   4.472  1.00  0.00              
ATOM     14  CA  TRP    16       9.887   1.555   5.065  1.00  0.00              
ATOM     15  C   TRP    16       8.710   1.406   4.104  1.00  0.00              
ATOM     16  O   TRP    16       8.163   2.397   3.622  1.00  0.00              
ATOM     17  N   THR    17       8.318   0.159   3.820  1.00  0.00              
ATOM     18  CA  THR    17       7.132  -0.183   3.042  1.00  0.00              
ATOM     19  C   THR    17       5.968   0.748   3.403  1.00  0.00              
ATOM     20  O   THR    17       5.327   1.340   2.536  1.00  0.00              
ATOM     21  N   CYS    18       5.699   0.871   4.703  1.00  0.00              
ATOM     22  CA  CYS    18       4.594   1.659   5.204  1.00  0.00              
ATOM     23  C   CYS    18       4.650   3.113   4.732  1.00  0.00              
ATOM     24  O   CYS    18       3.636   3.661   4.292  1.00  0.00              
ATOM     25  N   GLU    19       5.824   3.752   4.802  1.00  0.00              
ATOM     26  CA  GLU    19       5.951   5.130   4.359  1.00  0.00              
ATOM     27  C   GLU    19       5.968   5.226   2.829  1.00  0.00              
ATOM     28  O   GLU    19       5.356   6.150   2.292  1.00  0.00              
ATOM     29  N   ASP    20       6.521   4.231   2.114  1.00  0.00              
ATOM     30  CA  ASP    20       6.316   4.142   0.667  1.00  0.00              
ATOM     31  C   ASP    20       4.817   4.178   0.348  1.00  0.00              
ATOM     32  O   ASP    20       4.399   4.940  -0.521  1.00  0.00              
ATOM     33  N   PHE    21       4.003   3.371   1.040  1.00  0.00              
ATOM     34  CA  PHE    21       2.552   3.380   0.856  1.00  0.00              
ATOM     35  C   PHE    21       1.999   4.775   1.158  1.00  0.00              
ATOM     36  O   PHE    21       1.346   5.379   0.311  1.00  0.00              
ATOM     37  N   LEU    22       2.234   5.282   2.371  1.00  0.00              
ATOM     38  CA  LEU    22       1.737   6.580   2.829  1.00  0.00              
ATOM     39  C   LEU    22       2.063   7.695   1.830  1.00  0.00              
ATOM     40  O   LEU    22       1.292   8.644   1.653  1.00  0.00              
ATOM     41  N   ALA    23       3.239   7.604   1.216  1.00  0.00              
ATOM     42  CA  ALA    23       3.720   8.536   0.212  1.00  0.00              
ATOM     43  C   ALA    23       3.045   8.324  -1.153  1.00  0.00              
ATOM     44  O   ALA    23       2.402   9.245  -1.657  1.00  0.00              
ATOM     45  N   VAL    24       3.166   7.128  -1.749  1.00  0.00              
ATOM     46  CA  VAL    24       2.486   6.754  -2.995  1.00  0.00              
ATOM     47  C   VAL    24       1.033   7.208  -2.941  1.00  0.00              
ATOM     48  O   VAL    24       0.548   7.908  -3.824  1.00  0.00              
ATOM     49  N   ASP    25       0.342   6.777  -1.891  1.00  0.00              
ATOM     50  CA  ASP    25      -1.080   6.967  -1.718  1.00  0.00              
ATOM     51  C   ASP    25      -1.445   8.454  -1.778  1.00  0.00              
ATOM     52  O   ASP    25      -2.407   8.817  -2.455  1.00  0.00              
ATOM     53  N   GLU    26      -0.690   9.321  -1.089  1.00  0.00              
ATOM     54  CA  GLU    26      -0.960  10.754  -1.148  1.00  0.00              
ATOM     55  C   GLU    26      -0.591  11.329  -2.514  1.00  0.00              
ATOM     56  O   GLU    26      -1.318  12.169  -3.035  1.00  0.00              
ATOM     57  N   SER    27       0.525  10.879  -3.095  1.00  0.00              
ATOM     58  CA  SER    27       0.948  11.314  -4.423  1.00  0.00              
ATOM     59  C   SER    27      -0.167  11.024  -5.442  1.00  0.00              
ATOM     60  O   SER    27      -0.486  11.867  -6.276  1.00  0.00              
ATOM     61  N   PHE    28      -0.773   9.838  -5.347  1.00  0.00              
ATOM     62  CA  PHE    28      -1.895   9.405  -6.174  1.00  0.00              
ATOM     63  C   PHE    28      -3.215  10.042  -5.718  1.00  0.00              
ATOM     64  O   PHE    28      -4.139  10.166  -6.516  1.00  0.00              
ATOM     65  N   THR    31      -7.919   7.983  -0.991  1.00  0.00              
ATOM     66  CA  THR    31      -8.364   7.856   0.397  1.00  0.00              
ATOM     67  C   THR    31      -8.112   6.438   0.918  1.00  0.00              
ATOM     68  O   THR    31      -8.289   5.466   0.189  1.00  0.00              
ATOM     69  N   ALA    32      -7.705   6.312   2.184  1.00  0.00              
ATOM     70  CA  ALA    32      -7.193   5.058   2.735  1.00  0.00              
ATOM     71  C   ALA    32      -8.232   3.937   2.631  1.00  0.00              
ATOM     72  O   ALA    32      -7.910   2.813   2.252  1.00  0.00              
ATOM     73  N   VAL    33      -9.494   4.260   2.914  1.00  0.00              
ATOM     74  CA  VAL    33     -10.601   3.336   2.724  1.00  0.00              
ATOM     75  C   VAL    33     -10.740   2.921   1.254  1.00  0.00              
ATOM     76  O   VAL    33     -10.974   1.746   0.964  1.00  0.00              
ATOM     77  N   GLY    34     -10.593   3.870   0.318  1.00  0.00              
ATOM     78  CA  GLY    34     -10.664   3.523  -1.099  1.00  0.00              
ATOM     79  C   GLY    34      -9.514   2.590  -1.457  1.00  0.00              
ATOM     80  O   GLY    34      -9.740   1.585  -2.123  1.00  0.00              
ATOM     81  N   PHE    35      -8.296   2.893  -0.994  1.00  0.00              
ATOM     82  CA  PHE    35      -7.167   1.996  -1.196  1.00  0.00              
ATOM     83  C   PHE    35      -7.517   0.606  -0.663  1.00  0.00              
ATOM     84  O   PHE    35      -7.354  -0.382  -1.371  1.00  0.00              
ATOM     85  N   ALA    36      -8.035   0.532   0.566  1.00  0.00              
ATOM     86  CA  ALA    36      -8.527  -0.710   1.143  1.00  0.00              
ATOM     87  C   ALA    36      -9.413  -1.465   0.155  1.00  0.00              
ATOM     88  O   ALA    36      -9.136  -2.617  -0.174  1.00  0.00              
ATOM     89  N   GLU    37     -10.455  -0.804  -0.359  1.00  0.00              
ATOM     90  CA  GLU    37     -11.342  -1.410  -1.342  1.00  0.00              
ATOM     91  C   GLU    37     -10.596  -1.853  -2.609  1.00  0.00              
ATOM     92  O   GLU    37     -10.848  -2.951  -3.097  1.00  0.00              
ATOM     93  N   ALA    38      -9.716  -1.010  -3.160  1.00  0.00              
ATOM     94  CA  ALA    38      -8.963  -1.326  -4.370  1.00  0.00              
ATOM     95  C   ALA    38      -8.130  -2.594  -4.176  1.00  0.00              
ATOM     96  O   ALA    38      -8.178  -3.504  -4.999  1.00  0.00              
ATOM     97  N   LEU    39      -7.338  -2.630  -3.103  1.00  0.00              
ATOM     98  CA  LEU    39      -6.467  -3.758  -2.807  1.00  0.00              
ATOM     99  C   LEU    39      -7.311  -4.988  -2.470  1.00  0.00              
ATOM    100  O   LEU    39      -6.966  -6.105  -2.845  1.00  0.00              
ATOM    101  N   ASN    40      -8.405  -4.774  -1.737  1.00  0.00              
ATOM    102  CA  ASN    40      -9.260  -5.826  -1.218  1.00  0.00              
ATOM    103  C   ASN    40      -8.854  -6.168   0.213  1.00  0.00              
ATOM    104  O   ASN    40      -8.757  -7.340   0.567  1.00  0.00              
ATOM    105  N   ALA    48      -9.629  -4.539   4.488  1.00  0.00              
ATOM    106  CA  ALA    48     -10.242  -3.569   5.373  1.00  0.00              
ATOM    107  C   ALA    48      -9.310  -2.363   5.524  1.00  0.00              
ATOM    108  O   ALA    48      -8.109  -2.550   5.709  1.00  0.00              
ATOM    109  N   VAL    49      -9.865  -1.145   5.523  1.00  0.00              
ATOM    110  CA  VAL    49      -9.166   0.116   5.796  1.00  0.00              
ATOM    111  C   VAL    49      -8.139  -0.039   6.924  1.00  0.00              
ATOM    112  O   VAL    49      -7.019   0.467   6.830  1.00  0.00              
ATOM    113  N   LEU    50      -8.524  -0.702   8.011  1.00  0.00              
ATOM    114  CA  LEU    50      -7.640  -0.900   9.147  1.00  0.00              
ATOM    115  C   LEU    50      -6.346  -1.601   8.732  1.00  0.00              
ATOM    116  O   LEU    50      -5.276  -1.207   9.183  1.00  0.00              
ATOM    117  N   ASP    51      -6.420  -2.617   7.871  1.00  0.00              
ATOM    118  CA  ASP    51      -5.227  -3.306   7.406  1.00  0.00              
ATOM    119  C   ASP    51      -4.270  -2.318   6.735  1.00  0.00              
ATOM    120  O   ASP    51      -3.086  -2.299   7.059  1.00  0.00              
ATOM    121  N   VAL    52      -4.791  -1.465   5.839  1.00  0.00              
ATOM    122  CA  VAL    52      -4.008  -0.365   5.274  1.00  0.00              
ATOM    123  C   VAL    52      -3.353   0.428   6.406  1.00  0.00              
ATOM    124  O   VAL    52      -2.148   0.658   6.373  1.00  0.00              
ATOM    125  N   GLN    53      -4.144   0.850   7.398  1.00  0.00              
ATOM    126  CA  GLN    53      -3.637   1.615   8.534  1.00  0.00              
ATOM    127  C   GLN    53      -2.460   0.896   9.207  1.00  0.00              
ATOM    128  O   GLN    53      -1.412   1.496   9.436  1.00  0.00              
ATOM    129  N   GLY    54      -2.618  -0.389   9.533  1.00  0.00              
ATOM    130  CA  GLY    54      -1.571  -1.176  10.174  1.00  0.00              
ATOM    131  C   GLY    54      -0.331  -1.302   9.285  1.00  0.00              
ATOM    132  O   GLY    54       0.791  -1.170   9.776  1.00  0.00              
ATOM    133  N   ILE    55      -0.526  -1.545   7.986  1.00  0.00              
ATOM    134  CA  ILE    55       0.544  -1.531   6.999  1.00  0.00              
ATOM    135  C   ILE    55       1.297  -0.199   7.024  1.00  0.00              
ATOM    136  O   ILE    55       2.504  -0.194   7.252  1.00  0.00              
ATOM    137  N   ALA    56       0.632   0.943   6.818  1.00  0.00              
ATOM    138  CA  ALA    56       1.365   2.203   6.788  1.00  0.00              
ATOM    139  C   ALA    56       2.023   2.519   8.134  1.00  0.00              
ATOM    140  O   ALA    56       3.189   2.912   8.187  1.00  0.00              
ATOM    141  N   THR    57       1.297   2.293   9.231  1.00  0.00              
ATOM    142  CA  THR    57       1.842   2.421  10.577  1.00  0.00              
ATOM    143  C   THR    57       2.942   1.385  10.848  1.00  0.00              
ATOM    144  O   THR    57       3.608   1.473  11.877  1.00  0.00              
ATOM    145  N   VAL    58       3.174   0.445   9.924  1.00  0.00              
ATOM    146  CA  VAL    58       4.312  -0.455   9.921  1.00  0.00              
ATOM    147  C   VAL    58       4.261  -1.416  11.109  1.00  0.00              
ATOM    148  O   VAL    58       5.293  -1.725  11.701  1.00  0.00              
ATOM    149  N   THR    59       3.057  -1.903  11.428  1.00  0.00              
ATOM    150  CA  THR    59       2.859  -3.002  12.363  1.00  0.00              
ATOM    151  C   THR    59       2.937  -4.304  11.567  1.00  0.00              
ATOM    152  O   THR    59       3.887  -5.073  11.687  1.00  0.00              
ATOM    153  N   PRO    60       1.921  -4.537  10.739  1.00  0.00              
ATOM    154  CA  PRO    60       1.875  -5.623   9.781  1.00  0.00              
ATOM    155  C   PRO    60       2.666  -5.231   8.532  1.00  0.00              
ATOM    156  O   PRO    60       2.877  -4.044   8.289  1.00  0.00              
ATOM    157  N   ALA    61       3.012  -6.222   7.706  1.00  0.00              
ATOM    158  CA  ALA    61       3.652  -6.054   6.407  1.00  0.00              
ATOM    159  C   ALA    61       2.810  -6.856   5.405  1.00  0.00              
ATOM    160  O   ALA    61       2.343  -7.940   5.760  1.00  0.00              
ATOM    161  N   CYS    66       2.548  -6.343   4.193  1.00  0.00              
ATOM    162  CA  CYS    66       1.830  -7.072   3.159  1.00  0.00              
ATOM    163  C   CYS    66       2.709  -8.192   2.600  1.00  0.00              
ATOM    164  O   CYS    66       3.880  -7.969   2.297  1.00  0.00              
ATOM    165  N   THR    67       2.144  -9.388   2.422  1.00  0.00              
ATOM    166  CA  THR    67       2.827 -10.510   1.790  1.00  0.00              
ATOM    167  C   THR    67       2.496 -10.575   0.307  1.00  0.00              
ATOM    168  O   THR    67       1.555  -9.935  -0.144  1.00  0.00              
ATOM    169  N   GLN    68       3.272 -11.379  -0.424  1.00  0.00              
ATOM    170  CA  GLN    68       3.342 -11.452  -1.882  1.00  0.00              
ATOM    171  C   GLN    68       2.081 -11.000  -2.620  1.00  0.00              
ATOM    172  O   GLN    68       2.103  -9.993  -3.323  1.00  0.00              
ATOM    173  N   ASP    69       0.986 -11.746  -2.467  1.00  0.00              
ATOM    174  CA  ASP    69      -0.262 -11.460  -3.165  1.00  0.00              
ATOM    175  C   ASP    69      -0.737 -10.042  -2.824  1.00  0.00              
ATOM    176  O   ASP    69      -0.957  -9.212  -3.704  1.00  0.00              
ATOM    177  N   LYS    70      -0.840  -9.746  -1.529  1.00  0.00              
ATOM    178  CA  LYS    70      -1.349  -8.467  -1.057  1.00  0.00              
ATOM    179  C   LYS    70      -0.399  -7.340  -1.443  1.00  0.00              
ATOM    180  O   LYS    70      -0.843  -6.235  -1.733  1.00  0.00              
ATOM    181  N   GLN    71       0.905  -7.607  -1.452  1.00  0.00              
ATOM    182  CA  GLN    71       1.925  -6.675  -1.897  1.00  0.00              
ATOM    183  C   GLN    71       1.724  -6.371  -3.384  1.00  0.00              
ATOM    184  O   GLN    71       1.740  -5.208  -3.785  1.00  0.00              
ATOM    185  N   ALA    72       1.501  -7.391  -4.215  1.00  0.00              
ATOM    186  CA  ALA    72       1.171  -7.181  -5.619  1.00  0.00              
ATOM    187  C   ALA    72      -0.110  -6.351  -5.741  1.00  0.00              
ATOM    188  O   ALA    72      -0.128  -5.359  -6.471  1.00  0.00              
ATOM    189  N   ASN    73      -1.172  -6.725  -5.019  1.00  0.00              
ATOM    190  CA  ASN    73      -2.439  -6.006  -5.059  1.00  0.00              
ATOM    191  C   ASN    73      -2.246  -4.541  -4.651  1.00  0.00              
ATOM    192  O   ASN    73      -2.746  -3.638  -5.318  1.00  0.00              
ATOM    193  N   PHE    74      -1.480  -4.301  -3.584  1.00  0.00              
ATOM    194  CA  PHE    74      -1.053  -2.977  -3.159  1.00  0.00              
ATOM    195  C   PHE    74      -0.390  -2.252  -4.317  1.00  0.00              
ATOM    196  O   PHE    74      -0.819  -1.165  -4.684  1.00  0.00              
ATOM    197  N   LYS    75       0.659  -2.844  -4.887  1.00  0.00              
ATOM    198  CA  LYS    75       1.426  -2.218  -5.952  1.00  0.00              
ATOM    199  C   LYS    75       0.512  -1.814  -7.108  1.00  0.00              
ATOM    200  O   LYS    75       0.596  -0.693  -7.608  1.00  0.00              
ATOM    201  N   ASP    76      -0.385  -2.721  -7.504  1.00  0.00              
ATOM    202  CA  ASP    76      -1.356  -2.465  -8.553  1.00  0.00              
ATOM    203  C   ASP    76      -2.264  -1.297  -8.159  1.00  0.00              
ATOM    204  O   ASP    76      -2.358  -0.322  -8.901  1.00  0.00              
ATOM    205  N   LYS    77      -2.913  -1.366  -6.992  1.00  0.00              
ATOM    206  CA  LYS    77      -3.794  -0.298  -6.529  1.00  0.00              
ATOM    207  C   LYS    77      -3.076   1.046  -6.453  1.00  0.00              
ATOM    208  O   LYS    77      -3.612   2.093  -6.817  1.00  0.00              
ATOM    209  N   VAL    78      -1.827   0.979  -6.021  1.00  0.00              
ATOM    210  CA  VAL    78      -0.894   2.085  -5.914  1.00  0.00              
ATOM    211  C   VAL    78      -0.103   2.256  -7.209  1.00  0.00              
ATOM    212  O   VAL    78       1.007   2.780  -7.160  1.00  0.00              
ATOM    213  N   LYS    79      -0.656   1.857  -8.358  1.00  0.00              
ATOM    214  CA  LYS    79      -0.174   2.202  -9.690  1.00  0.00              
ATOM    215  C   LYS    79       1.351   2.083  -9.822  1.00  0.00              
ATOM    216  O   LYS    79       2.025   3.063 -10.159  1.00  0.00              
ATOM    217  N   GLY    80       1.904   0.904  -9.522  1.00  0.00              
ATOM    218  CA  GLY    80       3.336   0.633  -9.604  1.00  0.00              
ATOM    219  C   GLY    80       3.602  -0.873  -9.566  1.00  0.00              
ATOM    220  O   GLY    80       2.681  -1.676  -9.409  1.00  0.00              
ATOM    221  N   GLU    81       4.868  -1.246  -9.751  1.00  0.00              
ATOM    222  CA  GLU    81       5.398  -2.593  -9.644  1.00  0.00              
ATOM    223  C   GLU    81       5.886  -2.833  -8.206  1.00  0.00              
ATOM    224  O   GLU    81       6.250  -1.871  -7.528  1.00  0.00              
ATOM    225  N   TRP    82       5.917  -4.088  -7.725  1.00  0.00              
ATOM    226  CA  TRP    82       6.400  -4.411  -6.385  1.00  0.00              
ATOM    227  C   TRP    82       7.813  -3.869  -6.175  1.00  0.00              
ATOM    228  O   TRP    82       8.126  -3.345  -5.107  1.00  0.00              
ATOM    229  N   ASP    83       8.635  -3.946  -7.225  1.00  0.00              
ATOM    230  CA  ASP    83       9.935  -3.314  -7.383  1.00  0.00              
ATOM    231  C   ASP    83       9.998  -1.954  -6.686  1.00  0.00              
ATOM    232  O   ASP    83      10.943  -1.685  -5.946  1.00  0.00              
ATOM    233  N   LYS    84       8.985  -1.109  -6.917  1.00  0.00              
ATOM    234  CA  LYS    84       8.903   0.232  -6.351  1.00  0.00              
ATOM    235  C   LYS    84       9.065   0.192  -4.840  1.00  0.00              
ATOM    236  O   LYS    84       9.713   1.055  -4.256  1.00  0.00              
ATOM    237  N   ILE    85       8.402  -0.768  -4.203  1.00  0.00              
ATOM    238  CA  ILE    85       8.258  -0.860  -2.765  1.00  0.00              
ATOM    239  C   ILE    85       9.371  -1.712  -2.169  1.00  0.00              
ATOM    240  O   ILE    85       9.846  -1.421  -1.075  1.00  0.00              
ATOM    241  N   LYS    86       9.820  -2.736  -2.898  1.00  0.00              
ATOM    242  CA  LYS    86      11.038  -3.455  -2.553  1.00  0.00              
ATOM    243  C   LYS    86      12.199  -2.461  -2.462  1.00  0.00              
ATOM    244  O   LYS    86      12.903  -2.418  -1.457  1.00  0.00              
END
