REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0061AL212_4 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : BRYANT 
REMARK  ---------------------------------------------------------- 
TARGET T0061  
REMARK =======================================================================  
AUTHOR 2738-1421-4442  
REMARK This prediction was prepared by Anna Panchenko, Aron Marchler-Bauer,  
REMARK and Steve Bryant, NCBI.  
REMARK =======================================================================  
METHOD Predictions were made with the potential and alignment model used in  
METHOD CASP1 and CASP2 predictions, as described by Madej et al. in Proteins  
METHOD 23:356-369, 1995. Convergence control has been added to the Gibbs-  
METHOD Sampling alignment model. In addition to contact-based threading  
METHOD potentials, PSSMs summarizing sequence conservation in the family  
METHOD represented by the template structure are used to score threading  
METHOD alignments. Threading "cores" summarizing the conserved substructure  
METHOD in the templates used for models below have been based on structure  
METHOD superpositions generated by VAST (Gibrat et al., Curr Opin Struct  
METHOD Biol 1996 Jun;6(3):377-385 ).  
METHOD The alignments have been calculated with the Gibbs Sampling threading  
METHOD engine. No single template has been identified in threading database  
METHOD searches with unambiguous scores/p-values. We therefore submit "NONE"  
METHOD as model no. 1, indicating that the automated search methods have not  
METHOD indicated a clearly favored template. Additional models represent   
METHOD top-scoring hits from threading database searches, models 2 and 3  
METHOD have been calculated using PSSM-based scoring, and models 4 and 5 with  
METHOD the contact-based threader.  
REMARK =======================================================================  
MODEL  4  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1yrn_A 
ATOM      1  N   VAL    13      14.267  47.740   5.307  1.00  0.00              
ATOM      2  CA  VAL    13      14.584  46.374   5.825  1.00  0.00              
ATOM      3  C   VAL    13      13.236  45.753   6.257  1.00  0.00              
ATOM      4  O   VAL    13      12.482  46.347   7.048  1.00  0.00              
ATOM      5  N   ASN    14      12.904  44.613   5.649  1.00  0.00              
ATOM      6  CA  ASN    14      11.656  43.908   5.931  1.00  0.00              
ATOM      7  C   ASN    14      11.448  43.749   7.414  1.00  0.00              
ATOM      8  O   ASN    14      12.401  43.619   8.172  1.00  0.00              
ATOM      9  N   SER    15      10.188  43.753   7.853  1.00  0.00              
ATOM     10  CA  SER    15       9.852  43.601   9.270  1.00  0.00              
ATOM     11  C   SER    15      10.519  42.360   9.869  1.00  0.00              
ATOM     12  O   SER    15      10.987  42.361  11.027  1.00  0.00              
ATOM     13  N   TRP    16      10.594  41.316   9.050  1.00  0.00              
ATOM     14  CA  TRP    16      11.212  40.075   9.480  1.00  0.00              
ATOM     15  C   TRP    16      12.747  40.243   9.618  1.00  0.00              
ATOM     16  O   TRP    16      13.333  39.883  10.648  1.00  0.00              
ATOM     17  N   THR    17      13.372  40.898   8.646  1.00  0.00              
ATOM     18  CA  THR    17      14.798  41.125   8.714  1.00  0.00              
ATOM     19  C   THR    17      15.175  41.869   9.991  1.00  0.00              
ATOM     20  O   THR    17      16.089  41.456  10.728  1.00  0.00              
ATOM     21  N   CYS    18      14.433  42.926  10.297  1.00  0.00              
ATOM     22  CA  CYS    18      14.739  43.727  11.478  1.00  0.00              
ATOM     23  C   CYS    18      14.745  42.920  12.760  1.00  0.00              
ATOM     24  O   CYS    18      15.553  43.169  13.663  1.00  0.00              
ATOM     25  N   GLU    19      13.849  41.940  12.830  1.00  0.00              
ATOM     26  CA  GLU    19      13.726  41.089  14.002  1.00  0.00              
ATOM     27  C   GLU    19      14.974  40.269  14.132  1.00  0.00              
ATOM     28  O   GLU    19      15.524  40.156  15.214  1.00  0.00              
ATOM     29  N   ASP    20      15.444  39.739  13.009  1.00  0.00              
ATOM     30  CA  ASP    20      16.653  38.909  12.983  1.00  0.00              
ATOM     31  C   ASP    20      17.898  39.708  13.424  1.00  0.00              
ATOM     32  O   ASP    20      18.703  39.219  14.224  1.00  0.00              
ATOM     33  N   PHE    21      18.038  40.927  12.893  1.00  0.00              
ATOM     34  CA  PHE    21      19.145  41.828  13.229  1.00  0.00              
ATOM     35  C   PHE    21      19.106  42.122  14.732  1.00  0.00              
ATOM     36  O   PHE    21      20.132  42.037  15.406  1.00  0.00              
ATOM     37  N   LEU    22      17.914  42.397  15.267  1.00  0.00              
ATOM     38  CA  LEU    22      17.748  42.665  16.700  1.00  0.00              
ATOM     39  C   LEU    22      18.098  41.404  17.497  1.00  0.00              
ATOM     40  O   LEU    22      18.711  41.500  18.556  1.00  0.00              
ATOM     41  N   ALA    23      17.736  40.226  16.965  1.00  0.00              
ATOM     42  CA  ALA    23      18.016  38.910  17.595  1.00  0.00              
ATOM     43  C   ALA    23      19.530  38.660  17.648  1.00  0.00              
ATOM     44  O   ALA    23      20.071  38.255  18.682  1.00  0.00              
ATOM     45  N   VAL    24      20.199  38.888  16.517  1.00  0.00              
ATOM     46  CA  VAL    24      21.642  38.751  16.437  1.00  0.00              
ATOM     47  C   VAL    24      22.212  39.771  17.423  1.00  0.00              
ATOM     48  O   VAL    24      22.959  39.406  18.342  1.00  0.00              
ATOM     49  N   ASP    25      21.772  41.024  17.291  1.00  0.00              
ATOM     50  CA  ASP    25      22.276  42.106  18.135  1.00  0.00              
ATOM     51  C   ASP    25      22.232  41.815  19.626  1.00  0.00              
ATOM     52  O   ASP    25      23.188  42.074  20.365  1.00  0.00              
ATOM     53  N   PHE    28      32.093  39.965  12.725  1.00  0.00              
ATOM     54  CA  PHE    28      33.205  39.847  11.801  1.00  0.00              
ATOM     55  C   PHE    28      32.601  39.774  10.417  1.00  0.00              
ATOM     56  O   PHE    28      31.388  39.840  10.267  1.00  0.00              
ATOM     57  N   GLN    29      33.432  39.653   9.399  1.00  0.00              
ATOM     58  CA  GLN    29      32.930  39.567   8.039  1.00  0.00              
ATOM     59  C   GLN    29      32.101  38.305   7.785  1.00  0.00              
ATOM     60  O   GLN    29      31.041  38.391   7.163  1.00  0.00              
ATOM     61  N   PRO    30      32.586  37.140   8.245  1.00  0.00              
ATOM     62  CA  PRO    30      31.888  35.865   8.039  1.00  0.00              
ATOM     63  C   PRO    30      30.463  35.977   8.579  1.00  0.00              
ATOM     64  O   PRO    30      29.491  35.615   7.892  1.00  0.00              
ATOM     65  N   THR    31      30.349  36.574   9.766  1.00  0.00              
ATOM     66  CA  THR    31      29.069  36.799  10.432  1.00  0.00              
ATOM     67  C   THR    31      28.198  37.807   9.646  1.00  0.00              
ATOM     68  O   THR    31      27.050  37.516   9.285  1.00  0.00              
ATOM     69  N   ALA    32      28.765  38.964   9.332  1.00  0.00              
ATOM     70  CA  ALA    32      28.048  39.980   8.573  1.00  0.00              
ATOM     71  C   ALA    32      27.479  39.381   7.260  1.00  0.00              
ATOM     72  O   ALA    32      26.369  39.721   6.841  1.00  0.00              
ATOM     73  N   VAL    33      28.201  38.450   6.641  1.00  0.00              
ATOM     74  CA  VAL    33      27.753  37.833   5.377  1.00  0.00              
ATOM     75  C   VAL    33      26.587  36.901   5.606  1.00  0.00              
ATOM     76  O   VAL    33      25.579  36.966   4.893  1.00  0.00              
ATOM     77  N   GLY    34      26.730  36.009   6.579  1.00  0.00              
ATOM     78  CA  GLY    34      25.651  35.082   6.893  1.00  0.00              
ATOM     79  C   GLY    34      24.381  35.835   7.293  1.00  0.00              
ATOM     80  O   GLY    34      23.313  35.563   6.774  1.00  0.00              
ATOM     81  N   PHE    35      24.510  36.836   8.151  1.00  0.00              
ATOM     82  CA  PHE    35      23.356  37.634   8.550  1.00  0.00              
ATOM     83  C   PHE    35      22.748  38.338   7.336  1.00  0.00              
ATOM     84  O   PHE    35      21.527  38.316   7.139  1.00  0.00              
ATOM     85  N   ALA    36      23.594  38.952   6.515  1.00  0.00              
ATOM     86  CA  ALA    36      23.109  39.626   5.329  1.00  0.00              
ATOM     87  C   ALA    36      22.266  38.637   4.517  1.00  0.00              
ATOM     88  O   ALA    36      21.143  38.939   4.121  1.00  0.00              
ATOM     89  N   GLU    37      22.812  37.434   4.340  1.00  0.00              
ATOM     90  CA  GLU    37      22.188  36.319   3.601  1.00  0.00              
ATOM     91  C   GLU    37      20.804  35.924   4.127  1.00  0.00              
ATOM     92  O   GLU    37      19.910  35.611   3.337  1.00  0.00              
ATOM     93  N   ALA    38      20.663  35.923   5.458  1.00  0.00              
ATOM     94  CA  ALA    38      19.416  35.595   6.157  1.00  0.00              
ATOM     95  C   ALA    38      18.392  36.740   6.217  1.00  0.00              
ATOM     96  O   ALA    38      17.195  36.514   6.340  1.00  0.00              
ATOM     97  N   LEU    39      18.852  37.973   6.131  1.00  0.00              
ATOM     98  CA  LEU    39      17.926  39.078   6.143  1.00  0.00              
ATOM     99  C   LEU    39      17.628  39.534   4.720  1.00  0.00              
ATOM    100  O   LEU    39      16.931  40.534   4.513  1.00  0.00              
ATOM    101  N   VAL    49      18.188  38.827   3.746  1.00  0.00              
ATOM    102  CA  VAL    49      17.978  39.177   2.353  1.00  0.00              
ATOM    103  C   VAL    49      18.268  40.634   2.026  1.00  0.00              
ATOM    104  O   VAL    49      17.537  41.269   1.251  1.00  0.00              
ATOM    105  N   LEU    50      19.329  41.169   2.627  1.00  0.00              
ATOM    106  CA  LEU    50      19.748  42.559   2.420  1.00  0.00              
ATOM    107  C   LEU    50      21.256  42.477   2.223  1.00  0.00              
ATOM    108  O   LEU    50      21.847  41.451   2.542  1.00  0.00              
ATOM    109  N   ASP    51      21.885  43.518   1.683  1.00  0.00              
ATOM    110  CA  ASP    51      23.326  43.454   1.481  1.00  0.00              
ATOM    111  C   ASP    51      24.067  43.515   2.778  1.00  0.00              
ATOM    112  O   ASP    51      23.509  43.881   3.800  1.00  0.00              
ATOM    113  N   VAL    52      25.341  43.142   2.767  1.00  0.00              
ATOM    114  CA  VAL    52      26.128  43.187   3.997  1.00  0.00              
ATOM    115  C   VAL    52      26.391  44.654   4.368  1.00  0.00              
ATOM    116  O   VAL    52      26.549  44.977   5.549  1.00  0.00              
ATOM    117  N   GLN    53      26.451  45.551   3.368  1.00  0.00              
ATOM    118  CA  GLN    53      26.641  46.986   3.670  1.00  0.00              
ATOM    119  C   GLN    53      25.450  47.425   4.489  1.00  0.00              
ATOM    120  O   GLN    53      25.618  48.086   5.501  1.00  0.00              
ATOM    121  N   GLY    54      24.252  47.018   4.059  1.00  0.00              
ATOM    122  CA  GLY    54      23.044  47.338   4.795  1.00  0.00              
ATOM    123  C   GLY    54      23.153  46.878   6.240  1.00  0.00              
ATOM    124  O   GLY    54      22.820  47.630   7.175  1.00  0.00              
ATOM    125  N   ILE    55      23.645  45.661   6.442  1.00  0.00              
ATOM    126  CA  ILE    55      23.768  45.181   7.807  1.00  0.00              
ATOM    127  C   ILE    55      24.881  45.906   8.529  1.00  0.00              
ATOM    128  O   ILE    55      24.787  46.130   9.742  1.00  0.00              
ATOM    129  N   ALA    56      25.877  46.379   7.782  1.00  0.00              
ATOM    130  CA  ALA    56      26.978  47.103   8.404  1.00  0.00              
ATOM    131  C   ALA    56      26.450  48.409   8.999  1.00  0.00              
ATOM    132  O   ALA    56      26.598  48.678  10.201  1.00  0.00              
ATOM    133  N   THR    57      25.802  49.201   8.154  1.00  0.00              
ATOM    134  CA  THR    57      25.233  50.441   8.602  1.00  0.00              
ATOM    135  C   THR    57      24.176  50.246   9.680  1.00  0.00              
ATOM    136  O   THR    57      24.071  51.105  10.558  1.00  0.00              
ATOM    137  N   VAL    58      23.451  49.106   9.670  1.00  0.00              
ATOM    138  CA  VAL    58      22.420  48.812  10.694  1.00  0.00              
ATOM    139  C   VAL    58      23.058  48.635  12.053  1.00  0.00              
ATOM    140  O   VAL    58      22.553  49.124  13.039  1.00  0.00              
ATOM    141  N   THR    59      24.160  47.912  12.121  1.00  0.00              
ATOM    142  CA  THR    59      24.834  47.727  13.396  1.00  0.00              
ATOM    143  C   THR    59      25.452  49.013  13.843  1.00  0.00              
ATOM    144  O   THR    59      25.414  49.349  15.016  1.00  0.00              
ATOM    145  N   PRO    60      26.002  49.751  12.888  1.00  0.00              
ATOM    146  CA  PRO    60      26.615  51.040  13.179  1.00  0.00              
ATOM    147  C   PRO    60      25.554  51.961  13.801  1.00  0.00              
ATOM    148  O   PRO    60      25.726  52.409  14.947  1.00  0.00              
ATOM    149  N   ALA    61      24.409  52.123  13.124  1.00  0.00              
ATOM    150  CA  ALA    61      23.296  52.962  13.608  1.00  0.00              
ATOM    151  C   ALA    61      22.717  52.456  14.921  1.00  0.00              
ATOM    152  O   ALA    61      22.527  53.220  15.891  1.00  0.00              
ATOM    153  N   ILE    62      22.542  51.146  15.000  1.00  0.00              
ATOM    154  CA  ILE    62      22.026  50.538  16.212  1.00  0.00              
ATOM    155  C   ILE    62      22.960  50.859  17.375  1.00  0.00              
ATOM    156  O   ILE    62      22.519  51.257  18.434  1.00  0.00              
ATOM    157  N   VAL    63      24.260  50.697  17.186  1.00  0.00              
ATOM    158  CA  VAL    63      25.184  50.999  18.268  1.00  0.00              
ATOM    159  C   VAL    63      25.143  52.484  18.560  1.00  0.00              
ATOM    160  O   VAL    63      25.215  52.873  19.697  1.00  0.00              
ATOM    161  N   GLN    64      25.026  53.317  17.538  1.00  0.00              
ATOM    162  CA  GLN    64      24.975  54.753  17.762  1.00  0.00              
ATOM    163  C   GLN    64      23.740  55.212  18.534  1.00  0.00              
ATOM    164  O   GLN    64      23.783  56.171  19.317  1.00  0.00              
END
