REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0062AL215_1_4 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : ZHU-JUN 
REMARK  ---------------------------------------------------------- 
TARGET     T0062  
AUTHOR     4070-8855-4894  
METHOD     The target is compared with PDB25 database (U.Hobohm et al., 1992).  
METHOD     For each structure in PDB25, a model is built in the following way:  
METHOD     the sequence (query) is compared with NR database using transitive   
METHOD     BLAST (Neuwald et al. 1997). Similar sequences are collected and   
METHOD     purged at score 150.  Those sequences are aligned with query   
METHOD     sequence using Bayesian aligner (Zhu et al., 1998) and a   
METHOD     profile-like model is built (Lawrence et al. 1993; Gribskov et al.,  
METHOD     1987; unpublished result by Jun Zhu, Roland Luthy and Charlse E.   
METHOD     Lawrence).  Then, the target file is compared with the models   
METHOD     derived from PDB25.  
MODEL     1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1ndh 
ATOM      1  N   ASP    78       5.146  39.515  -5.500  1.00  0.00              
ATOM      2  CA  ASP    78       4.046  38.551  -5.281  1.00  0.00              
ATOM      3  C   ASP    78       4.273  38.060  -3.834  1.00  0.00              
ATOM      4  O   ASP    78       5.439  38.039  -3.345  1.00  0.00              
ATOM      5  N   ARG    79       3.141  37.678  -3.214  1.00  0.00              
ATOM      6  CA  ARG    79       3.331  37.167  -1.829  1.00  0.00              
ATOM      7  C   ARG    79       3.008  35.701  -1.814  1.00  0.00              
ATOM      8  O   ARG    79       2.445  35.243  -2.836  1.00  0.00              
ATOM      9  N   ILE    80       3.341  34.988  -0.774  1.00  0.00              
ATOM     10  CA  ILE    80       2.972  33.543  -0.705  1.00  0.00              
ATOM     11  C   ILE    80       2.741  33.284   0.781  1.00  0.00              
ATOM     12  O   ILE    80       3.419  33.973   1.573  1.00  0.00              
ATOM     13  N   LEU    81       1.861  32.375   1.109  1.00  0.00              
ATOM     14  CA  LEU    81       1.508  32.098   2.502  1.00  0.00              
ATOM     15  C   LEU    81       2.404  31.137   3.241  1.00  0.00              
ATOM     16  O   LEU    81       2.602  29.996   2.822  1.00  0.00              
ATOM     17  N   LYS    82       2.918  31.667   4.376  1.00  0.00              
ATOM     18  CA  LYS    82       3.784  30.889   5.252  1.00  0.00              
ATOM     19  C   LYS    82       3.053  30.478   6.536  1.00  0.00              
ATOM     20  O   LYS    82       2.458  31.341   7.135  1.00  0.00              
ATOM     21  N   ASP    83       3.163  29.230   6.932  1.00  0.00              
ATOM     22  CA  ASP    83       2.548  28.735   8.171  1.00  0.00              
ATOM     23  C   ASP    83       3.661  27.942   8.886  1.00  0.00              
ATOM     24  O   ASP    83       4.434  27.148   8.277  1.00  0.00              
ATOM     25  N   HIS    84       3.656  28.222  10.191  1.00  0.00              
ATOM     26  CA  HIS    84       4.617  27.697  11.087  1.00  0.00              
ATOM     27  C   HIS    84       4.740  28.020  12.567  1.00  0.00              
ATOM     28  O   HIS    84       3.997  28.864  13.093  1.00  0.00              
END
