PFRMAT SS 
TARGET T0063 
AUTHOR 3707-4066-9021 
REMARK QL with homologues available at absalpha.dcrt.nih.gov:8008  
METHOD Quadratic logistics algorithm with homologues. 
METHOD 1995. Di Francesco, V., P.J. Munson, J. Garnier, Use of Multiple  
METHOD Alignments in Protein Secondary Structure Prediction. 28th Hawaii  
METHOD International Conference on System Sciences, 5: p. 285-291, IEEE,  
METHOD Los Alamitos, CA 
METHOD 
METHOD 1994. Munson, P. J., V. Di Francesco and R. Porrelli, Protein  
METHOD Secondary Structure Prediction using Periodic-Quadratic-Logistic  
METHOD Models: Theoretical and Practical Issues. 27th Annual Hawaii  
METHOD International Conference on System Science, 5: p. 375-384,  
METHOD IEEE, Los Alamitos, CA 
METHOD  
METHOD 1993. Munson, P. J., L. Cao, V. Di Francesco and R. Porrelli,  
METHOD Semiparametric and Kernel Density Estimation Procedures for  
METHOD Prediction of Protein Secondary Structure. Statistical Computing  
METHOD Section, American Statistical Association Annual Meeting, : p. 107-113.  
METHOD 
METHOD 1993. Munson, P. J., V. Di Francesco and R. Porrelli, Secondary  
METHOD Structure Prediction using Penalized Likelihood Models. Computing  
METHOD Science and Statistics: 25th Symposium on the Interface, Mike Tarter,  
METHOD ed., The Interface Foundation, Alexandria, VA: p. 203-209. 
MODEL 2 
M	E	0.489 
V	E	0.675 
L	E	0.675 
K	E	0.786 
W	E	0.748 
V	E	0.541 
M	C	0.669 
S	C	0.809 
T	C	0.713 
K	C	0.587 
Y	C	0.404 
V	E	0.509 
E	E	0.463 
A	E	0.540 
G	C	0.451 
E	C	0.440 
L	C	0.516 
K	C	0.649 
E	C	0.776 
G	C	0.839 
S	C	0.530 
Y	E	0.933 
V	E	0.973 
V	E	0.932 
I	E	0.676 
D	C	0.782 
G	C	0.915 
E	C	0.953 
P	C	0.886 
C	C	0.860 
R	C	0.563 
V	E	0.691 
V	E	0.839 
E	E	0.798 
I	E	0.666 
E	E	0.514 
K	C	0.554 
S	C	0.812 
K	C	0.917 
T	C	0.922 
G	C	0.940 
K	C	0.851 
H	C	0.778 
G	C	0.800 
S	C	0.771 
A	H	0.491 
K	H	0.574 
A	H	0.622 
R	H	0.499 
I	E	0.623 
V	E	0.706 
A	E	0.658 
V	E	0.591 
G	E	0.574 
V	E	0.457 
F	C	0.480 
D	C	0.605 
G	C	0.743 
G	C	0.707 
K	C	0.590 
R	C	0.476 
T	E	0.433 
L	E	0.604 
S	E	0.560 
L	C	0.692 
P	C	0.800 
V	C	0.809 
D	C	0.842 
A	C	0.766 
Q	C	0.576 
V	C	0.540 
E	E	0.522 
V	E	0.537 
P	E	0.509 
I	E	0.592 
I	H	0.354 
E	C	0.450 
K	C	0.527 
F	C	0.581 
T	H	0.479 
A	H	0.537 
Q	H	0.473 
I	E	0.461 
L	E	0.480 
S	E	0.584 
V	E	0.391 
S	C	0.692 
G	C	0.811 
D	C	0.833 
V	C	0.582 
I	H	0.443 
Q	E	0.554 
L	E	0.688 
M	C	0.359 
D	C	0.495 
M	H	0.514 
R	C	0.592 
D	C	0.716 
Y	C	0.623 
K	C	0.646 
T	C	0.509 
I	C	0.487 
E	E	0.456 
V	C	0.557 
P	C	0.796 
M	C	0.778 
K	C	0.710 
Y	C	0.630 
V	C	0.453 
E	H	0.710 
E	H	0.774 
E	H	0.743 
A	H	0.781 
K	H	0.820 
G	H	0.608 
R	H	0.501 
L	C	0.506 
A	C	0.711 
P	C	0.723 
G	C	0.840 
A	C	0.761 
E	C	0.388 
V	H	0.450 
E	E	0.557 
V	H	0.539 
W	H	0.631 
Q	H	0.699 
I	H	0.838 
L	H	0.689 
D	C	0.553 
R	H	0.563 
Y	H	0.585 
K	H	0.557 
I	E	0.451 
I	E	0.545 
R	E	0.563 
V	E	0.420 
K	C	0.442 
END 
