PFRMAT TS 
TARGET T0063 
AUTHOR 1179-2476-7283 
REMARK 
METHOD  Basic method is AMMP with kohonen neural net 
METHOD  alpha carbons only with 
METHOD  theta ci-1,ci,ci+1 = 90 
METHOD  all atoms have a ~5A vdw exclusion 
METHOD  hydrophobic have a steped attractive potential 
METHOD  based on distances in real structures 
METHOD  hydrophobics = a,c,m,y,f,l,i,v 
METHOD  AMMP script follows 
METHOD 
METHOD echo off; 
METHOD read tar63.ca.fold; 
METHOD use none bond angle step nonbon; 
METHOD setf mxdq 1.; 
METHOD kohonen 200 20 1; 
METHOD cngdel 100; 
METHOD v_maxwell 300; tpac 1000 .00001 300; 
METHOD tpac 10000 .00001 300; 
METHOD cngdel 100; 
METHOD echo off; output tar63.ca.fold; dump atom bond angle step; close;  
METHOD echo; 
METHOD exit; 
METHOD   
METHOD models 1,2 are enantiomorphs as this method is achiral 
METHOD models 3,4 are enantiomorphs as this method is achiral 
METHOD Therefore only one of 1,2 or 3,4 is "correct" 
METHOD but i can't tell which  
METHOD models 1,2 are derived from 3,4 by rearranging the nterminal 
METHOD and repeating the minimization (cngdel afterwards as above) 
METHOD 
MODEL 2 
PARENT N/A 
ATOM      1  CA  MET     1    -168.796 -28.192-161.136  1.00 10.00 
ATOM      2  CA  VAL     2    -170.241 -24.680-161.720  1.00 10.00 
ATOM      3  CA  LEU     3    -167.909 -22.311-159.825  1.00 10.00 
ATOM      4  CA  LYS     4    -166.649 -20.800-163.119  1.00 10.00 
ATOM      5  CA  TRP     5    -163.588 -19.315-161.318  1.00 10.00 
ATOM      6  CA  VAL     6    -163.793 -21.725-158.517  1.00 10.00 
ATOM      7  CA  MET     7    -165.180 -19.037-156.146  1.00 10.00 
ATOM      8  CA  SER     8    -164.785 -15.929-158.387  1.00 10.00 
ATOM      9  CA  THR     9    -168.152 -16.740-160.073  1.00 10.00 
ATOM     10  CA  LYS    10    -170.013 -16.145-156.757  1.00 10.00 
ATOM     11  CA  TYR    11    -169.790 -19.891-155.930  1.00 10.00 
ATOM     12  CA  VAL    12    -168.161 -18.900-152.648  1.00 10.00 
ATOM     13  CA  GLU    13    -171.339 -17.553-151.017  1.00 10.00 
ATOM     14  CA  ALA    14    -171.224 -20.876-149.133  1.00 10.00 
ATOM     15  CA  GLY    15    -174.415 -20.304-147.103  1.00 10.00 
ATOM     16  CA  GLU    16    -174.725 -24.084-146.372  1.00 10.00 
ATOM     17  CA  LEU    17    -173.324 -25.125-149.829  1.00 10.00 
ATOM     18  CA  LYS    18    -176.965 -25.449-151.120  1.00 10.00 
ATOM     19  CA  GLU    19    -178.024 -21.915-150.000  1.00 10.00 
ATOM     20  CA  GLY    20    -175.307 -19.939-151.920  1.00 10.00 
ATOM     21  CA  SER    21    -174.223 -22.949-154.019  1.00 10.00 
ATOM     22  CA  TYR    22    -170.500 -23.122-152.849  1.00 10.00 
ATOM     23  CA  VAL    23    -170.504 -26.716-153.883  1.00 10.00 
ATOM     24  CA  VAL    24    -169.758 -27.950-150.510  1.00 10.00 
ATOM     25  CA  ILE    25    -171.199 -30.890-152.432  1.00 10.00 
ATOM     26  CA  ASP    26    -174.627 -29.193-152.782  1.00 10.00 
ATOM     27  CA  GLY    27    -176.527 -32.489-152.320  1.00 10.00 
ATOM     28  CA  GLU    28    -177.794 -31.081-148.982  1.00 10.00 
ATOM     29  CA  PRO    29    -175.102 -33.257-147.330  1.00 10.00 
ATOM     30  CA  CYS    30    -172.412 -30.577-148.000  1.00 10.00 
ATOM     31  CA  ARG    31    -171.351 -31.117-144.368  1.00 10.00 
ATOM     32  CA  VAL    32    -168.175 -29.293-145.419  1.00 10.00 
ATOM     33  CA  VAL    33    -170.378 -26.380-146.399  1.00 10.00 
ATOM     34  CA  GLU    34    -170.692 -25.131-142.777  1.00 10.00 
ATOM     35  CA  ILE    35    -166.875 -25.133-142.551  1.00 10.00 
ATOM     36  CA  GLU    36    -167.060 -27.694-139.713  1.00 10.00 
ATOM     37  CA  LYS    37    -163.943 -26.020-138.227  1.00 10.00 
ATOM     38  CA  SER    38    -166.255 -23.439-136.556  1.00 10.00 
ATOM     39  CA  LYS    39    -165.691 -20.980-139.464  1.00 10.00 
ATOM     40  CA  THR    40    -167.689 -18.323-137.526  1.00 10.00 
ATOM     41  CA  GLY    41    -167.078 -15.758-140.329  1.00 10.00 
ATOM     42  CA  LYS    42    -170.875 -15.202-140.572  1.00 10.00 
ATOM     43  CA  HIS    43    -171.143 -18.542-142.463  1.00 10.00 
ATOM     44  CA  GLY    44    -171.215 -16.657-145.827  1.00 10.00 
ATOM     45  CA  SER    45    -167.407 -16.119-145.740  1.00 10.00 
ATOM     46  CA  ALA    46    -166.691 -19.080-148.139  1.00 10.00 
ATOM     47  CA  LYS    47    -168.154 -21.378-145.504  1.00 10.00 
ATOM     48  CA  ALA    48    -167.819 -23.611-148.569  1.00 10.00 
ATOM     49  CA  ARG    49    -165.486 -25.666-146.558  1.00 10.00 
ATOM     50  CA  ILE    50    -165.596 -28.363-149.066  1.00 10.00 
ATOM     51  CA  VAL    51    -163.209 -26.694-151.207  1.00 10.00 
ATOM     52  CA  ALA    52    -166.438 -25.518-152.157  1.00 10.00 
ATOM     53  CA  VAL    53    -165.175 -21.978-151.835  1.00 10.00 
ATOM     54  CA  GLY    54    -163.269 -22.564-148.705  1.00 10.00 
ATOM     55  CA  VAL    55    -160.335 -23.462-150.890  1.00 10.00 
ATOM     56  CA  PHE    56    -159.757 -19.701-151.062  1.00 10.00 
ATOM     57  CA  ASP    57    -155.958 -19.585-150.389  1.00 10.00 
ATOM     58  CA  GLY    58    -156.634 -17.130-147.501  1.00 10.00 
ATOM     59  CA  GLY    59    -154.320 -14.447-149.029  1.00 10.00 
ATOM     60  CA  LYS    60    -156.192 -14.471-152.395  1.00 10.00 
ATOM     61  CA  ARG    61    -159.533 -14.104-150.548  1.00 10.00 
ATOM     62  CA  THR    62    -161.480 -14.870-153.788  1.00 10.00 
ATOM     63  CA  LEU    63    -163.647 -17.563-152.059  1.00 10.00 
ATOM     64  CA  SER    64    -163.617 -15.599-148.730  1.00 10.00 
ATOM     65  CA  LEU    65    -161.830 -18.679-147.294  1.00 10.00 
ATOM     66  CA  PRO    66    -163.542 -18.840-143.884  1.00 10.00 
ATOM     67  CA  VAL    67    -162.839 -22.622-144.140  1.00 10.00 
ATOM     68  CA  ASP    68    -159.096 -22.094-143.321  1.00 10.00 
ATOM     69  CA  ALA    69    -158.560 -22.240-147.107  1.00 10.00 
ATOM     70  CA  GLN    70    -155.002 -23.645-147.097  1.00 10.00 
ATOM     71  CA  VAL    71    -156.001 -24.453-150.734  1.00 10.00 
ATOM     72  CA  GLU    72    -152.758 -26.365-151.369  1.00 10.00 
ATOM     73  CA  VAL    73    -154.991 -28.293-153.817  1.00 10.00 
ATOM     74  CA  PRO    74    -154.954 -25.294-156.152  1.00 10.00 
ATOM     75  CA  ILE    75    -158.709 -26.062-156.069  1.00 10.00 
ATOM     76  CA  ILE    76    -159.729 -23.188-158.299  1.00 10.00 
ATOM     77  CA  GLU    77    -156.237 -21.949-159.310  1.00 10.00 
ATOM     78  CA  LYS    78    -157.822 -18.643-160.523  1.00 10.00 
ATOM     79  CA  PHE    79    -160.259 -18.606-157.545  1.00 10.00 
ATOM     80  CA  THR    80    -157.195 -18.481-155.263  1.00 10.00 
ATOM     81  CA  ALA    81    -157.970 -22.121-154.352  1.00 10.00 
ATOM     82  CA  GLN    82    -161.741 -21.462-154.556  1.00 10.00 
ATOM     83  CA  ILE    83    -163.168 -24.965-155.354  1.00 10.00 
ATOM     84  CA  LEU    84    -166.612 -23.295-155.704  1.00 10.00 
ATOM     85  CA  SER    85    -168.256 -26.119-157.430  1.00 10.00 
ATOM     86  CA  VAL    86    -171.459 -24.026-157.425  1.00 10.00 
ATOM     87  CA  SER    87    -174.078 -26.819-156.913  1.00 10.00 
ATOM     88  CA  GLY    88    -173.801 -28.169-160.473  1.00 10.00 
ATOM     89  CA  ASP    89    -173.099 -31.575-158.839  1.00 10.00 
ATOM     90  CA  VAL    90    -169.925 -30.215-157.101  1.00 10.00 
ATOM     91  CA  ILE    91    -168.199 -33.299-158.558  1.00 10.00 
ATOM     92  CA  GLN    92    -165.644 -31.449-160.696  1.00 10.00 
ATOM     93  CA  LEU    93    -165.157 -29.208-157.595  1.00 10.00 
ATOM     94  CA  MET    94    -161.816 -27.836-158.681  1.00 10.00 
ATOM     95  CA  ASP    95    -162.625 -28.360-162.327  1.00 10.00 
ATOM     96  CA  MET    96    -165.052 -25.800-160.929  1.00 10.00 
ATOM     97  CA  ARG    97    -166.206 -25.437-164.593  1.00 10.00 
ATOM     98  CA  ASP    98    -162.574 -24.971-165.785  1.00 10.00 
ATOM     99  CA  TYR    99    -161.619 -23.414-162.386  1.00 10.00 
ATOM    100  CA  LYS   100    -158.597 -21.846-164.182  1.00 10.00 
ATOM    101  CA  THR   101    -156.971 -25.317-164.536  1.00 10.00 
ATOM    102  CA  ILE   102    -158.295 -26.328-161.063  1.00 10.00 
ATOM    103  CA  GLU   103    -154.944 -27.949-160.254  1.00 10.00 
ATOM    104  CA  VAL   104    -157.339 -29.841-157.983  1.00 10.00 
ATOM    105  CA  PRO   105    -158.840 -31.328-161.171  1.00 10.00 
ATOM    106  CA  MET   106    -161.552 -32.378-158.738  1.00 10.00 
ATOM    107  CA  LYS   107    -159.206 -35.273-157.913  1.00 10.00 
ATOM    108  CA  TYR   108    -158.147 -33.011-155.023  1.00 10.00 
ATOM    109  CA  VAL   109    -160.961 -34.572-153.070  1.00 10.00 
ATOM    110  CA  GLU   110    -159.390 -38.065-153.690  1.00 10.00 
ATOM    111  CA  GLU   111    -159.886 -39.091-150.017  1.00 10.00 
ATOM    112  CA  GLU   112    -157.810 -36.051-148.923  1.00 10.00 
ATOM    113  CA  ALA   113    -161.122 -34.147-148.439  1.00 10.00 
ATOM    114  CA  LYS   114    -161.327 -35.770-144.945  1.00 10.00 
ATOM    115  CA  GLY   115    -164.623 -37.520-145.865  1.00 10.00 
ATOM    116  CA  ARG   116    -166.557 -34.510-144.443  1.00 10.00 
ATOM    117  CA  LEU   117    -164.971 -32.324-147.178  1.00 10.00 
ATOM    118  CA  ALA   118    -168.054 -32.128-149.416  1.00 10.00 
ATOM    119  CA  PRO   119    -169.762 -35.181-147.838  1.00 10.00 
ATOM    120  CA  GLY   120    -168.329 -37.499-150.550  1.00 10.00 
ATOM    121  CA  ALA   121    -165.142 -35.366-150.937  1.00 10.00 
ATOM    122  CA  GLU   122    -164.607 -37.231-154.257  1.00 10.00 
ATOM    123  CA  VAL   123    -164.606 -33.715-155.745  1.00 10.00 
ATOM    124  CA  GLU   124    -167.921 -33.386-154.022  1.00 10.00 
ATOM    125  CA  VAL   125    -166.699 -29.793-153.522  1.00 10.00 
ATOM    126  CA  TRP   126    -163.540 -31.122-151.915  1.00 10.00 
ATOM    127  CA  GLN   127    -161.418 -29.695-154.676  1.00 10.00 
ATOM    128  CA  ILE   128    -159.137 -27.992-152.158  1.00 10.00 
ATOM    129  CA  LEU   129    -158.497 -31.479-150.878  1.00 10.00 
ATOM    130  CA  ASP   130    -154.653 -31.692-150.544  1.00 10.00 
ATOM    131  CA  ARG   131    -155.207 -31.140-146.799  1.00 10.00 
ATOM    132  CA  TYR   132    -156.987 -28.021-148.101  1.00 10.00 
ATOM    133  CA  LYS   133    -158.091 -26.896-144.670  1.00 10.00 
ATOM    134  CA  ILE   134    -161.071 -26.022-146.889  1.00 10.00 
ATOM    135  CA  ILE   135    -161.342 -29.555-148.175  1.00 10.00 
ATOM    136  CA  ARG   136    -160.524 -30.940-144.720  1.00 10.00 
ATOM    137  CA  VAL   137    -163.664 -28.927-144.057  1.00 10.00 
TER 
END    
