PFRMAT TS 
TARGET T0063 
AUTHOR 1179-2476-7283 
REMARK 
METHOD  Basic method is AMMP with kohonen neural net 
METHOD  alpha carbons only with 
METHOD  theta ci-1,ci,ci+1 = 90 
METHOD  all atoms have a ~5A vdw exclusion 
METHOD  hydrophobic have a steped attractive potential 
METHOD  based on distances in real structures 
METHOD  hydrophobics = a,c,m,y,f,l,i,v 
METHOD  AMMP script follows 
METHOD 
METHOD echo off; 
METHOD read tar63.ca.fold; 
METHOD use none bond angle step nonbon; 
METHOD setf mxdq 1.; 
METHOD kohonen 200 20 1; 
METHOD cngdel 100; 
METHOD v_maxwell 300; tpac 1000 .00001 300; 
METHOD tpac 10000 .00001 300; 
METHOD cngdel 100; 
METHOD echo off; output tar63.ca.fold; dump atom bond angle step; close;  
METHOD echo; 
METHOD exit; 
METHOD   
METHOD models 1,2 are enantiomorphs as this method is achiral 
METHOD models 3,4 are enantiomorphs as this method is achiral 
METHOD Therefore only one of 1,2 or 3,4 is "correct" 
METHOD but i can't tell which  
METHOD models 1,2 are derived from 3,4 by rearranging the nterminal 
METHOD and repeating the minimization (cngdel afterwards as above) 
METHOD 
MODEL 3 
PARENT N/A 
ATOM      1  CA  MET     1     162.418  25.719 149.334  1.00 10.00 
ATOM      2  CA  VAL     2     162.012  23.811 152.467  1.00 10.00 
ATOM      3  CA  LEU     3     163.146  26.581 154.684  1.00 10.00 
ATOM      4  CA  LYS     4     160.472  25.080 156.692  1.00 10.00 
ATOM      5  CA  TRP     5     163.864  25.448 158.060  1.00 10.00 
ATOM      6  CA  VAL     6     163.194  23.421 161.157  1.00 10.00 
ATOM      7  CA  MET     7     165.059  20.354 159.910  1.00 10.00 
ATOM      8  CA  SER     8     165.622  19.049 163.477  1.00 10.00 
ATOM      9  CA  THR     9     169.406  18.689 162.805  1.00 10.00 
ATOM     10  CA  LYS    10     168.832  17.025 159.371  1.00 10.00 
ATOM     11  CA  TYR    11     169.902  20.327 157.709  1.00 10.00 
ATOM     12  CA  VAL    12     168.801  19.268 154.263  1.00 10.00 
ATOM     13  CA  GLU    13     172.305  18.100 153.430  1.00 10.00 
ATOM     14  CA  ALA    14     170.881  19.410 150.160  1.00 10.00 
ATOM     15  CA  GLY    15     174.238  18.546 148.485  1.00 10.00 
ATOM     16  CA  GLU    16     174.597  22.084 146.999  1.00 10.00 
ATOM     17  CA  LEU    17     173.093  23.714 150.149  1.00 10.00 
ATOM     18  CA  LYS    18     175.839  26.396 149.966  1.00 10.00 
ATOM     19  CA  GLU    19     178.663  23.851 150.631  1.00 10.00 
ATOM     20  CA  GLY    20     176.619  21.737 153.132  1.00 10.00 
ATOM     21  CA  SER    21     175.100  24.834 154.848  1.00 10.00 
ATOM     22  CA  TYR    22     171.670  23.173 154.401  1.00 10.00 
ATOM     23  CA  VAL    23     169.658  26.395 154.673  1.00 10.00 
ATOM     24  CA  VAL    24     170.582  27.504 151.282  1.00 10.00 
ATOM     25  CA  ILE    25     171.502  30.720 152.976  1.00 10.00 
ATOM     26  CA  ASP    26     175.092  29.514 153.647  1.00 10.00 
ATOM     27  CA  GLY    27     176.404  33.114 153.743  1.00 10.00 
ATOM     28  CA  GLU    28     177.979  32.434 150.306  1.00 10.00 
ATOM     29  CA  PRO    29     174.866  34.024 148.721  1.00 10.00 
ATOM     30  CA  CYS    30     172.988  30.652 148.690  1.00 10.00 
ATOM     31  CA  ARG    31     172.685  31.127 144.911  1.00 10.00 
ATOM     32  CA  VAL    32     169.383  29.347 145.507  1.00 10.00 
ATOM     33  CA  VAL    33     171.345  26.538 147.025  1.00 10.00 
ATOM     34  CA  GLU    34     171.612  25.069 143.506  1.00 10.00 
ATOM     35  CA  ILE    35     167.778  25.273 143.531  1.00 10.00 
ATOM     36  CA  GLU    36     167.954  25.765 139.711  1.00 10.00 
ATOM     37  CA  LYS    37     164.119  25.748 139.415  1.00 10.00 
ATOM     38  CA  SER    38     164.255  29.176 137.673  1.00 10.00 
ATOM     39  CA  LYS    39     160.562  28.786 136.675  1.00 10.00 
ATOM     40  CA  THR    40     161.633  26.574 133.712  1.00 10.00 
ATOM     41  CA  GLY    41     158.311  24.643 133.936  1.00 10.00 
ATOM     42  CA  LYS    42     159.109  23.678 137.576  1.00 10.00 
ATOM     43  CA  HIS    43     162.282  21.842 136.403  1.00 10.00 
ATOM     44  CA  GLY    44     162.317  19.881 139.712  1.00 10.00 
ATOM     45  CA  SER    45     165.986  20.878 140.303  1.00 10.00 
ATOM     46  CA  ALA    46     165.429  20.865 144.112  1.00 10.00 
ATOM     47  CA  LYS    47     169.001  19.610 144.576  1.00 10.00 
ATOM     48  CA  ALA    48     169.631  22.466 147.069  1.00 10.00 
ATOM     49  CA  ARG    49     166.072  23.683 147.406  1.00 10.00 
ATOM     50  CA  ILE    50     166.866  27.171 148.415  1.00 10.00 
ATOM     51  CA  VAL    51     166.223  25.966 151.855  1.00 10.00 
ATOM     52  CA  ALA    52     168.595  23.240 151.285  1.00 10.00 
ATOM     53  CA  VAL    53     165.638  21.132 151.858  1.00 10.00 
ATOM     54  CA  GLY    54     165.938  19.393 148.521  1.00 10.00 
ATOM     55  CA  VAL    55     162.621  21.276 148.635  1.00 10.00 
ATOM     56  CA  PHE    56     161.571  19.361 151.758  1.00 10.00 
ATOM     57  CA  ASP    57     157.894  18.578 150.792  1.00 10.00 
ATOM     58  CA  GLY    58     158.407  14.759 150.779  1.00 10.00 
ATOM     59  CA  GLY    59     157.363  14.479 154.472  1.00 10.00 
ATOM     60  CA  LYS    60     160.257  12.095 155.483  1.00 10.00 
ATOM     61  CA  ARG    61     162.066  12.157 152.076  1.00 10.00 
ATOM     62  CA  THR    62     165.388  13.124 153.761  1.00 10.00 
ATOM     63  CA  LEU    63     165.455  16.470 151.850  1.00 10.00 
ATOM     64  CA  SER    64     164.824  14.689 148.470  1.00 10.00 
ATOM     65  CA  LEU    65     161.756  16.967 148.038  1.00 10.00 
ATOM     66  CA  PRO    66     161.990  17.304 144.230  1.00 10.00 
ATOM     67  CA  VAL    67     160.842  20.987 144.577  1.00 10.00 
ATOM     68  CA  ASP    68     157.466  19.941 145.986  1.00 10.00 
ATOM     69  CA  ALA    69     158.352  22.643 148.543  1.00 10.00 
ATOM     70  CA  GLN    70     154.645  23.603 148.777  1.00 10.00 
ATOM     71  CA  VAL    71     156.214  26.945 149.729  1.00 10.00 
ATOM     72  CA  GLU    72     153.219  28.119 151.775  1.00 10.00 
ATOM     73  CA  VAL    73     155.643  27.499 154.664  1.00 10.00 
ATOM     74  CA  PRO    74     154.292  23.949 154.667  1.00 10.00 
ATOM     75  CA  ILE    75     157.552  23.854 152.742  1.00 10.00 
ATOM     76  CA  ILE    76     159.057  21.175 154.851  1.00 10.00 
ATOM     77  CA  GLU    77     155.746  19.475 155.789  1.00 10.00 
ATOM     78  CA  LYS    78     156.368  20.182 159.537  1.00 10.00 
ATOM     79  CA  PHE    79     160.110  20.987 159.018  1.00 10.00 
ATOM     80  CA  THR    80     160.832  17.230 159.359  1.00 10.00 
ATOM     81  CA  ALA    81     161.440  17.121 155.574  1.00 10.00 
ATOM     82  CA  GLN    82     165.045  17.900 156.227  1.00 10.00 
ATOM     83  CA  ILE    83     163.652  21.462 155.878  1.00 10.00 
ATOM     84  CA  LEU    84     166.986  23.266 155.885  1.00 10.00 
ATOM     85  CA  SER    85     167.697  23.853 159.695  1.00 10.00 
ATOM     86  CA  VAL    86     171.166  24.776 158.612  1.00 10.00 
ATOM     87  CA  SER    87     172.526  24.632 162.194  1.00 10.00 
ATOM     88  CA  GLY    88     170.861  28.030 162.844  1.00 10.00 
ATOM     89  CA  ASP    89     173.514  29.970 160.791  1.00 10.00 
ATOM     90  CA  VAL    90     172.035  28.981 157.358  1.00 10.00 
ATOM     91  CA  ILE    91     169.970  32.160 157.047  1.00 10.00 
ATOM     92  CA  GLN    92     168.390  31.206 160.311  1.00 10.00 
ATOM     93  CA  LEU    93     167.330  28.333 158.012  1.00 10.00 
ATOM     94  CA  MET    94     163.943  30.002 157.645  1.00 10.00 
ATOM     95  CA  ASP    95     163.898  31.118 161.299  1.00 10.00 
ATOM     96  CA  MET    96     165.157  27.566 161.920  1.00 10.00 
ATOM     97  CA  ARG    97     163.406  27.554 165.359  1.00 10.00 
ATOM     98  CA  ASP    98     160.323  29.406 163.957  1.00 10.00 
ATOM     99  CA  TYR    99     160.375  27.075 160.904  1.00 10.00 
ATOM    100  CA  LYS   100     159.125  24.329 163.345  1.00 10.00 
ATOM    101  CA  THR   101     155.459  24.641 162.237  1.00 10.00 
ATOM    102  CA  ILE   102     156.637  25.132 158.625  1.00 10.00 
ATOM    103  CA  GLU   103     156.008  28.877 159.153  1.00 10.00 
ATOM    104  CA  VAL   104     159.222  29.486 157.144  1.00 10.00 
ATOM    105  CA  PRO   105     159.655  32.558 159.373  1.00 10.00 
ATOM    106  CA  MET   106     160.395  34.272 156.064  1.00 10.00 
ATOM    107  CA  LYS   107     156.639  34.454 155.372  1.00 10.00 
ATOM    108  CA  TYR   108     157.274  31.630 152.867  1.00 10.00 
ATOM    109  CA  VAL   109     159.996  33.637 151.063  1.00 10.00 
ATOM    110  CA  GLU   110     157.979  36.902 151.167  1.00 10.00 
ATOM    111  CA  GLU   111     159.988  38.050 148.097  1.00 10.00 
ATOM    112  CA  GLU   112     158.330  35.214 146.098  1.00 10.00 
ATOM    113  CA  ALA   113     161.434  32.980 146.575  1.00 10.00 
ATOM    114  CA  LYS   114     162.598  34.431 143.197  1.00 10.00 
ATOM    115  CA  GLY   115     165.133  36.682 144.978  1.00 10.00 
ATOM    116  CA  ARG   116     167.741  33.888 144.572  1.00 10.00 
ATOM    117  CA  LEU   117     165.733  31.607 146.962  1.00 10.00 
ATOM    118  CA  ALA   118     168.421  31.458 149.589  1.00 10.00 
ATOM    119  CA  PRO   119     170.003  34.840 148.610  1.00 10.00 
ATOM    120  CA  GLY   120     167.032  37.143 149.510  1.00 10.00 
ATOM    121  CA  ALA   121     164.521  34.364 150.383  1.00 10.00 
ATOM    122  CA  GLU   122     163.483  36.635 153.292  1.00 10.00 
ATOM    123  CA  VAL   123     164.929  33.964 155.641  1.00 10.00 
ATOM    124  CA  GLU   124     167.900  33.763 153.383  1.00 10.00 
ATOM    125  CA  VAL   125     167.003  30.018 153.761  1.00 10.00 
ATOM    126  CA  TRP   126     164.320  29.906 151.101  1.00 10.00 
ATOM    127  CA  GLN   127     161.887  30.779 153.765  1.00 10.00 
ATOM    128  CA  ILE   128     159.679  27.963 152.500  1.00 10.00 
ATOM    129  CA  LEU   129     160.155  29.536 149.125  1.00 10.00 
ATOM    130  CA  ASP   130     156.727  31.114 148.232  1.00 10.00 
ATOM    131  CA  ARG   131     157.043  29.614 144.691  1.00 10.00 
ATOM    132  CA  TYR   132     158.719  26.420 146.064  1.00 10.00 
ATOM    133  CA  LYS   133     159.794  25.402 142.558  1.00 10.00 
ATOM    134  CA  ILE   134     163.144  24.989 144.359  1.00 10.00 
ATOM    135  CA  ILE   135     162.841  28.390 145.923  1.00 10.00 
ATOM    136  CA  ARG   136     162.007  29.735 142.485  1.00 10.00 
ATOM    137  CA  VAL   137     165.765  29.441 142.796  1.00 10.00 
TER 
END    
