REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0064AL201_1_2 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : TATSUYA-AKUTSU 
REMARK  ---------------------------------------------------------- 
TARGET T0064  
AUTHOR 7648-2940-6918  
REMARK It seems that T0064 consists of two domains.   
METHOD We align a target sequence with structurally aligned sequences  
METHOD (i.e., multiple structure alignment), where a multiple structure  
METHOD alignment is computed from results of pairwise structure alignments  
METHOD for similar structures.   
METHOD Pairwise structure alignments are computed using a computer  
METHOD program STRALIGN [1] developed by the group-leader and they are  
METHOD combined into a multiple structure alignment using a method like  
METHOD center-star alignment.  
METHOD A simple dynamic programming procedure (Smith-Waterman like procedure)  
METHOD is used for computing an alignment between a target sequence and  
METHOD the aligned sequences.  
METHOD Finally, an alignment between a target and one of the aligned  
METHOD sequences (i.e., template sequence) is extracted and refined.  
METHOD Human knowledge is also used to find template structures and  
METHOD to refine alignments.  
METHOD  
METHOD [1] T. Akutsu: Protein structure alignment using dynamic programming  
METHOD and iterative alignment, IEICE Transactions on Information and Systems,  
METHOD vol. E79-D, pp. 1629--1636, 1996.  
METHOD  
METHOD Program code of STRALIGN is available via  
METHOD http://www.hgc.ims.u-tokyo.ac.jp/service/tooldoc/stralign/intro.html  
MODEL  1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1add 
ATOM      1  N   ASP A  75     -11.036  40.598  23.958  1.00  0.00              
ATOM      2  CA  ASP A  75      -9.687  40.964  23.579  1.00  0.00              
ATOM      3  C   ASP A  75      -9.078  42.000  24.526  1.00  0.00              
ATOM      4  O   ASP A  75      -7.856  42.122  24.600  1.00  0.00              
ATOM      5  N   SER A  76      -9.875  42.899  25.129  1.00  0.00              
ATOM      6  CA  SER A  76      -9.264  43.858  26.038  1.00  0.00              
ATOM      7  C   SER A  76      -8.660  43.112  27.199  1.00  0.00              
ATOM      8  O   SER A  76      -7.790  43.645  27.875  1.00  0.00              
ATOM      9  N   GLU A  77      -9.404  42.129  27.703  1.00  0.00              
ATOM     10  CA  GLU A  77      -8.919  41.351  28.821  1.00  0.00              
ATOM     11  C   GLU A  77      -7.680  40.563  28.435  1.00  0.00              
ATOM     12  O   GLU A  77      -6.672  40.640  29.126  1.00  0.00              
ATOM     13  N   TRP A  78      -7.569  40.160  27.175  1.00  0.00              
ATOM     14  CA  TRP A  78      -6.388  39.417  26.773  1.00  0.00              
ATOM     15  C   TRP A  78      -5.156  40.317  26.754  1.00  0.00              
ATOM     16  O   TRP A  78      -4.081  39.939  27.223  1.00  0.00              
ATOM     17  N   GLU A  79      -5.312  41.562  26.288  1.00  0.00              
ATOM     18  CA  GLU A  79      -4.195  42.494  26.237  1.00  0.00              
ATOM     19  C   GLU A  79      -3.829  42.980  27.626  1.00  0.00              
ATOM     20  O   GLU A  79      -2.666  42.955  28.014  1.00  0.00              
ATOM     21  N   LYS A  80      -4.826  43.025  28.494  1.00  0.00              
ATOM     22  CA  LYS A  80      -4.619  43.475  29.853  1.00  0.00              
ATOM     23  C   LYS A  80      -3.915  42.435  30.707  1.00  0.00              
ATOM     24  O   LYS A  80      -2.868  42.709  31.306  1.00  0.00              
ATOM     25  N   LEU A  81      -4.308  41.166  30.592  1.00  0.00              
ATOM     26  CA  LEU A  81      -3.651  40.171  31.401  1.00  0.00              
ATOM     27  C   LEU A  81      -2.246  39.876  30.899  1.00  0.00              
ATOM     28  O   LEU A  81      -1.314  39.835  31.706  1.00  0.00              
ATOM     29  N   VAL A  82      -0.264  42.338  29.560  1.00  0.00              
ATOM     30  CA  VAL A  82       0.542  43.450  30.002  1.00  0.00              
ATOM     31  C   VAL A  82       0.905  43.231  31.463  1.00  0.00              
ATOM     32  O   VAL A  82       2.050  43.387  31.879  1.00  0.00              
ATOM     33  N   ARG A  83       0.002  42.634  32.236  1.00  0.00              
ATOM     34  CA  ARG A  83       0.316  42.348  33.628  1.00  0.00              
ATOM     35  C   ARG A  83       1.376  41.254  33.736  1.00  0.00              
ATOM     36  O   ARG A  83       2.099  41.138  34.729  1.00  0.00              
ATOM     37  N   ASP A  84       1.298  40.258  32.867  1.00  0.00              
ATOM     38  CA  ASP A  84       2.284  39.206  32.925  1.00  0.00              
ATOM     39  C   ASP A  84       3.654  39.761  32.596  1.00  0.00              
ATOM     40  O   ASP A  84       4.648  39.405  33.217  1.00  0.00              
ATOM     41  N   ALA A  85       3.730  40.762  31.722  1.00  0.00              
ATOM     42  CA  ALA A  85       5.025  41.331  31.395  1.00  0.00              
ATOM     43  C   ALA A  85       5.551  42.126  32.579  1.00  0.00              
ATOM     44  O   ALA A  85       6.699  41.980  32.997  1.00  0.00              
ATOM     45  N   MET A  86       4.643  42.785  33.295  1.00  0.00              
ATOM     46  CA  MET A  86       5.049  43.548  34.456  1.00  0.00              
ATOM     47  C   MET A  86       5.483  42.615  35.562  1.00  0.00              
ATOM     48  O   MET A  86       6.242  43.003  36.451  1.00  0.00              
ATOM     49  N   THR A  87       4.777  41.485  35.677  1.00  0.00              
ATOM     50  CA  THR A  87       5.078  40.515  36.712  1.00  0.00              
ATOM     51  C   THR A  87       6.241  39.603  36.358  1.00  0.00              
ATOM     52  O   THR A  87       6.519  38.667  37.093  1.00  0.00              
ATOM     53  N   SER A  88       6.722  39.653  35.118  1.00  0.00              
ATOM     54  CA  SER A  88       7.840  38.817  34.738  1.00  0.00              
ATOM     55  C   SER A  88       9.035  39.061  35.642  1.00  0.00              
ATOM     56  O   SER A  88       8.991  39.927  36.514  1.00  0.00              
ATOM     57  N   GLY A  89       9.978  38.122  35.670  1.00  0.00              
ATOM     58  CA  GLY A  89      11.149  38.276  36.509  1.00  0.00              
ATOM     59  C   GLY A  89      12.313  38.825  35.698  1.00  0.00              
ATOM     60  O   GLY A  89      13.491  38.607  35.988  1.00  0.00              
ATOM     61  N   VAL A  90      12.004  39.635  34.701  1.00  0.00              
ATOM     62  CA  VAL A  90      13.049  40.220  33.888  1.00  0.00              
ATOM     63  C   VAL A  90      13.679  41.345  34.691  1.00  0.00              
ATOM     64  O   VAL A  90      13.172  41.712  35.745  1.00  0.00              
ATOM     65  N   SER A  91      14.889  41.780  34.371  1.00  0.00              
ATOM     66  CA  SER A  91      15.412  42.929  35.096  1.00  0.00              
ATOM     67  C   SER A  91      14.689  44.176  34.604  1.00  0.00              
ATOM     68  O   SER A  91      13.949  44.092  33.635  1.00  0.00              
ATOM     69  N   LYS A  92      14.614  45.234  35.411  1.00  0.00              
ATOM     70  CA  LYS A  92      13.892  46.430  34.996  1.00  0.00              
ATOM     71  C   LYS A  92      14.068  46.817  33.540  1.00  0.00              
ATOM     72  O   LYS A  92      13.107  47.189  32.879  1.00  0.00              
ATOM     73  N   LYS A  93      15.307  47.042  33.124  1.00  0.00              
ATOM     74  CA  LYS A  93      15.585  47.448  31.756  1.00  0.00              
ATOM     75  C   LYS A  93      14.942  46.541  30.723  1.00  0.00              
ATOM     76  O   LYS A  93      14.499  47.009  29.676  1.00  0.00              
ATOM     77  N   GLN A  94      15.138  45.229  30.841  1.00  0.00              
ATOM     78  CA  GLN A  94      14.551  44.315  29.876  1.00  0.00              
ATOM     79  C   GLN A  94      13.038  44.290  29.973  1.00  0.00              
ATOM     80  O   GLN A  94      12.338  43.965  29.017  1.00  0.00              
ATOM     81  N   PHE A  95      12.527  44.423  31.185  1.00  0.00              
ATOM     82  CA  PHE A  95      11.099  44.413  31.391  1.00  0.00              
ATOM     83  C   PHE A  95      10.472  45.603  30.706  1.00  0.00              
ATOM     84  O   PHE A  95       9.472  45.472  30.007  1.00  0.00              
ATOM     85  N   ARG A  96      11.156  46.750  30.760  1.00  0.00              
ATOM     86  CA  ARG A  96      10.658  47.945  30.115  1.00  0.00              
ATOM     87  C   ARG A  96      10.563  47.693  28.626  1.00  0.00              
ATOM     88  O   ARG A  96       9.596  48.088  27.977  1.00  0.00              
ATOM     89  N   GLU A  97      11.605  47.107  28.034  1.00  0.00              
ATOM     90  CA  GLU A  97      11.566  46.819  26.611  1.00  0.00              
ATOM     91  C   GLU A  97      10.391  45.926  26.252  1.00  0.00              
ATOM     92  O   GLU A  97      10.002  45.876  25.094  1.00  0.00              
ATOM     93  N   PHE A  98      10.135  44.911  27.076  1.00  0.00              
ATOM     94  CA  PHE A  98       9.019  44.015  26.828  1.00  0.00              
ATOM     95  C   PHE A  98       7.724  44.797  26.797  1.00  0.00              
ATOM     96  O   PHE A  98       7.017  44.811  25.803  1.00  0.00              
ATOM     97  N   LEU A  99       7.564  45.718  27.740  1.00  0.00              
ATOM     98  CA  LEU A  99       6.352  46.515  27.805  1.00  0.00              
ATOM     99  C   LEU A  99       6.264  47.493  26.665  1.00  0.00              
ATOM    100  O   LEU A  99       5.261  47.531  25.960  1.00  0.00              
ATOM    101  N   ASP A 100       7.422  47.912  26.192  1.00  0.00              
ATOM    102  CA  ASP A 100       7.473  48.843  25.088  1.00  0.00              
ATOM    103  C   ASP A 100       7.022  48.149  23.817  1.00  0.00              
ATOM    104  O   ASP A 100       6.108  48.619  23.144  1.00  0.00              
ATOM    105  N   GLN A 102       7.329  46.847  23.758  1.00  0.00              
ATOM    106  CA  GLN A 102       6.985  46.007  22.624  1.00  0.00              
ATOM    107  C   GLN A 102       5.504  45.698  22.545  1.00  0.00              
ATOM    108  O   GLN A 102       4.921  45.682  21.464  1.00  0.00              
ATOM    109  N   LYS A 103       4.925  45.187  23.626  1.00  0.00              
ATOM    110  CA  LYS A 103       3.519  44.842  23.578  1.00  0.00              
ATOM    111  C   LYS A 103       2.626  46.027  23.259  1.00  0.00              
ATOM    112  O   LYS A 103       1.547  45.877  22.680  1.00  0.00              
ATOM    113  N   TRP A 104       2.921  47.179  23.848  1.00  0.00              
ATOM    114  CA  TRP A 104       2.095  48.344  23.595  1.00  0.00              
ATOM    115  C   TRP A 104       2.128  48.733  22.128  1.00  0.00              
ATOM    116  O   TRP A 104       1.134  49.173  21.554  1.00  0.00              
ATOM    117  N   ARG A 105       3.300  48.653  21.512  1.00  0.00              
ATOM    118  CA  ARG A 105       3.415  48.985  20.108  1.00  0.00              
ATOM    119  C   ARG A 105       2.641  47.983  19.269  1.00  0.00              
ATOM    120  O   ARG A 105       1.747  48.353  18.509  1.00  0.00              
ATOM    121  N   LYS A 106       2.649  46.730  19.706  1.00  0.00              
ATOM    122  CA  LYS A 106       1.943  45.708  18.973  1.00  0.00              
ATOM    123  C   LYS A 106       0.486  45.636  19.369  1.00  0.00              
ATOM    124  O   LYS A 106      -0.298  44.909  18.775  1.00  0.00              
ATOM    125  N   SER A 107       0.090  46.271  20.454  1.00  0.00              
ATOM    126  CA  SER A 107      -1.308  46.192  20.819  1.00  0.00              
ATOM    127  C   SER A 107      -2.093  47.382  20.288  1.00  0.00              
ATOM    128  O   SER A 107      -3.272  47.553  20.604  1.00  0.00              
ATOM    129  N   GLN A 108      -1.386  48.355  19.711  1.00  0.00              
ATOM    130  CA  GLN A 108      -2.038  49.535  19.179  1.00  0.00              
ATOM    131  C   GLN A 108      -2.932  49.175  18.019  1.00  0.00              
ATOM    132  O   GLN A 108      -3.797  49.989  17.707  1.00  0.00              
END
