REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0065AL076_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : BASS-MICHAEL 
REMARK  ---------------------------------------------------------- 
TARGET T0065  
AUTHOR 6795-8227-6214  
REMARK CASP3 Prediction by Michael Bass on 8/17/98  
METHOD AmgenThread.  Gapped alignments with no end penalties.  
METHOD Uses residue-based statistical potentials.  Specific  
METHOD potentials include exposed surface area, inter-residue  
METHOD distance-dependent contacts, and backbone dihedral  
METHOD angle preferences.  The search database is against the  
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or  
METHOD less level containing 1,247 structures.  
METHOD This is an automatic prediction method.  
REMARK Results from database search:  
REMARK Sequence "t0065" has a significant match  
REMARK pdb1yrn_A     6.834     0.320    13.403  MOLECULE: MATING-TYPE PROTEIN A-1;  
REMARK                                          SCOP: Alpha; DNA-binding 3-helical bundle  
REMARK pdb1fxd       5.781     0.279    15.981  FERREDOXIN II  
REMARK                                          SCOP: A+B; Ferredoxin-like  
REMARK pdb6ins_E     4.763     0.240     7.362  INSULIN (PEPTIDE-LINKED, 29B - 1A, DES-30B)  
REMARK                                          SCOP: Small; Insulin-like  
REMARK pdb1lea       4.610     0.234     6.112  LEXA REPRESSOR DNA BINDING DOMAIN  
REMARK                                          SCOP: Alpha; DNA-binding 3-helical bundle  
REMARK pdb1mjc       4.413     0.226     7.272  MAJOR COLD SHOCK PROTEIN 7.4 (CSPA (CS 7.4)) OF  
REMARK                                          SCOP: Beta; OB-fold  
REMARK pdb1wfb_A     4.376     0.225     9.807  ANTIFREEZE PROTEIN ISOFORM HPLC6 (-180 DEGREES C)  
REMARK                                          SCOP: Peptides; Antifreeze polypeptide HPLC-6  
REMARK pdb1cei       4.174     0.217     7.868  MOLECULE: COLICIN E7 IMMUNITY PROTEIN;  
REMARK                                          SCOP: Alpha; Acyl carrier protein  
REMARK pdb1lfb       4.055     0.212    12.146  TRANSCRIPTION FACTOR LFB1 (HOMEODOMAIN)  
REMARK                                          SCOP: Alpha; DNA-binding 3-helical bundle  
REMARK pdb1aik_N     3.717     0.199    11.360  MOLECULE: HIV-1 GP41 GLYCOPROTEIN;  
REMARK pdb1r69       3.661     0.197     5.896  434 REPRESSOR (AMINO-TERMINAL DOMAIN) (R1-69)  
REMARK                                          SCOP: Alpha; lambda repressor-like DNA-binding domains  
REMARK pdb1cse_I     3.659     0.197    -0.026  SUBTILISIN CARLSBERG (E.C.3.4.21.62) (COMMERCIAL PRODUCT  
MODEL  1  
REMARK Sequence alignment follows:  
REMARK t0065        ........MKNAKQEHFELDQEWVELMVEAKEANISPEEIRKYLLLNKKS  
REMARK                      |: | .:|#.||.: .: |:|  . ||:.| |. ||.::  :  
REMARK pdb1yrn_A    ISPQARAFLEQVFRRKQSLNSKEKEEVAK..KCGITPLQVRVWFINKRMR  
REMARK   
REMARK t0065        AHPGPAARSHTVNPF  
REMARK                               
REMARK pdb1yrn_A    S..............  
REMARK   
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1yrn_A 
ATOM      1  N   MET B   1      18.038  40.927  12.893  1.00  0.00              
ATOM      2  CA  MET B   1      19.145  41.828  13.229  1.00  0.00              
ATOM      3  C   MET B   1      19.106  42.122  14.732  1.00  0.00              
ATOM      4  O   MET B   1      20.132  42.037  15.406  1.00  0.00              
ATOM      5  N   LYS B   2      17.914  42.397  15.267  1.00  0.00              
ATOM      6  CA  LYS B   2      17.748  42.665  16.700  1.00  0.00              
ATOM      7  C   LYS B   2      18.098  41.404  17.497  1.00  0.00              
ATOM      8  O   LYS B   2      18.711  41.500  18.556  1.00  0.00              
ATOM      9  N   ASN B   3      17.736  40.226  16.965  1.00  0.00              
ATOM     10  CA  ASN B   3      18.016  38.910  17.595  1.00  0.00              
ATOM     11  C   ASN B   3      19.530  38.660  17.648  1.00  0.00              
ATOM     12  O   ASN B   3      20.071  38.255  18.682  1.00  0.00              
ATOM     13  N   ALA B   4      20.199  38.888  16.517  1.00  0.00              
ATOM     14  CA  ALA B   4      21.642  38.751  16.437  1.00  0.00              
ATOM     15  C   ALA B   4      22.212  39.771  17.423  1.00  0.00              
ATOM     16  O   ALA B   4      22.959  39.406  18.342  1.00  0.00              
ATOM     17  N   LYS B   5      21.772  41.024  17.291  1.00  0.00              
ATOM     18  CA  LYS B   5      22.276  42.106  18.135  1.00  0.00              
ATOM     19  C   LYS B   5      22.232  41.815  19.626  1.00  0.00              
ATOM     20  O   LYS B   5      23.188  42.074  20.365  1.00  0.00              
ATOM     21  N   GLN B   6      21.109  41.277  20.065  1.00  0.00              
ATOM     22  CA  GLN B   6      20.927  40.947  21.459  1.00  0.00              
ATOM     23  C   GLN B   6      22.044  40.012  21.928  1.00  0.00              
ATOM     24  O   GLN B   6      22.413  40.026  23.111  1.00  0.00              
ATOM     25  N   GLU B   7      22.571  39.214  20.992  1.00  0.00              
ATOM     26  CA  GLU B   7      23.647  38.258  21.252  1.00  0.00              
ATOM     27  C   GLU B   7      25.072  38.758  21.002  1.00  0.00              
ATOM     28  O   GLU B   7      26.027  38.284  21.620  1.00  0.00              
ATOM     29  N   HIS B   8      25.229  39.669  20.052  1.00  0.00              
ATOM     30  CA  HIS B   8      26.551  40.168  19.697  1.00  0.00              
ATOM     31  C   HIS B   8      26.412  41.537  19.018  1.00  0.00              
ATOM     32  O   HIS B   8      25.889  41.643  17.903  1.00  0.00              
ATOM     33  N   PHE B   9      26.891  42.575  19.697  1.00  0.00              
ATOM     34  CA  PHE B   9      26.800  43.935  19.190  1.00  0.00              
ATOM     35  C   PHE B   9      27.664  44.228  17.958  1.00  0.00              
ATOM     36  O   PHE B   9      27.367  45.158  17.210  1.00  0.00              
ATOM     37  N   GLU B  10      28.755  43.480  17.783  1.00  0.00              
ATOM     38  CA  GLU B  10      29.692  43.665  16.652  1.00  0.00              
ATOM     39  C   GLU B  10      29.832  42.361  15.912  1.00  0.00              
ATOM     40  O   GLU B  10      29.699  41.317  16.514  1.00  0.00              
ATOM     41  N   LEU B  11      30.163  42.418  14.631  1.00  0.00              
ATOM     42  CA  LEU B  11      30.292  41.217  13.817  1.00  0.00              
ATOM     43  C   LEU B  11      31.536  41.155  12.925  1.00  0.00              
ATOM     44  O   LEU B  11      31.978  42.181  12.403  1.00  0.00              
ATOM     45  N   ASP B  12      32.093  39.965  12.725  1.00  0.00              
ATOM     46  CA  ASP B  12      33.205  39.847  11.801  1.00  0.00              
ATOM     47  C   ASP B  12      32.601  39.774  10.417  1.00  0.00              
ATOM     48  O   ASP B  12      31.388  39.840  10.267  1.00  0.00              
ATOM     49  N   GLN B  13      33.432  39.653   9.399  1.00  0.00              
ATOM     50  CA  GLN B  13      32.930  39.567   8.039  1.00  0.00              
ATOM     51  C   GLN B  13      32.101  38.305   7.785  1.00  0.00              
ATOM     52  O   GLN B  13      31.041  38.391   7.163  1.00  0.00              
ATOM     53  N   GLU B  14      32.586  37.140   8.245  1.00  0.00              
ATOM     54  CA  GLU B  14      31.888  35.865   8.039  1.00  0.00              
ATOM     55  C   GLU B  14      30.463  35.977   8.579  1.00  0.00              
ATOM     56  O   GLU B  14      29.491  35.615   7.892  1.00  0.00              
ATOM     57  N   TRP B  15      30.349  36.574   9.766  1.00  0.00              
ATOM     58  CA  TRP B  15      29.069  36.799  10.432  1.00  0.00              
ATOM     59  C   TRP B  15      28.198  37.807   9.646  1.00  0.00              
ATOM     60  O   TRP B  15      27.050  37.516   9.285  1.00  0.00              
ATOM     61  N   VAL B  16      28.765  38.964   9.332  1.00  0.00              
ATOM     62  CA  VAL B  16      28.048  39.980   8.573  1.00  0.00              
ATOM     63  C   VAL B  16      27.479  39.381   7.260  1.00  0.00              
ATOM     64  O   VAL B  16      26.369  39.721   6.841  1.00  0.00              
ATOM     65  N   GLU B  17      28.201  38.450   6.641  1.00  0.00              
ATOM     66  CA  GLU B  17      27.753  37.833   5.377  1.00  0.00              
ATOM     67  C   GLU B  17      26.587  36.901   5.606  1.00  0.00              
ATOM     68  O   GLU B  17      25.579  36.966   4.893  1.00  0.00              
ATOM     69  N   LEU B  18      26.730  36.009   6.579  1.00  0.00              
ATOM     70  CA  LEU B  18      25.651  35.082   6.893  1.00  0.00              
ATOM     71  C   LEU B  18      24.381  35.835   7.293  1.00  0.00              
ATOM     72  O   LEU B  18      23.313  35.563   6.774  1.00  0.00              
ATOM     73  N   MET B  19      24.510  36.836   8.151  1.00  0.00              
ATOM     74  CA  MET B  19      23.356  37.634   8.550  1.00  0.00              
ATOM     75  C   MET B  19      22.748  38.338   7.336  1.00  0.00              
ATOM     76  O   MET B  19      21.527  38.316   7.139  1.00  0.00              
ATOM     77  N   VAL B  20      23.594  38.952   6.515  1.00  0.00              
ATOM     78  CA  VAL B  20      23.109  39.626   5.329  1.00  0.00              
ATOM     79  C   VAL B  20      22.266  38.637   4.517  1.00  0.00              
ATOM     80  O   VAL B  20      21.143  38.939   4.121  1.00  0.00              
ATOM     81  N   GLU B  21      22.812  37.434   4.340  1.00  0.00              
ATOM     82  CA  GLU B  21      22.188  36.319   3.601  1.00  0.00              
ATOM     83  C   GLU B  21      20.804  35.924   4.127  1.00  0.00              
ATOM     84  O   GLU B  21      19.910  35.611   3.337  1.00  0.00              
ATOM     85  N   GLU B  24      20.663  35.923   5.458  1.00  0.00              
ATOM     86  CA  GLU B  24      19.416  35.595   6.157  1.00  0.00              
ATOM     87  C   GLU B  24      18.392  36.740   6.217  1.00  0.00              
ATOM     88  O   GLU B  24      17.195  36.514   6.340  1.00  0.00              
ATOM     89  N   ALA B  25      18.852  37.973   6.131  1.00  0.00              
ATOM     90  CA  ALA B  25      17.926  39.078   6.143  1.00  0.00              
ATOM     91  C   ALA B  25      17.628  39.534   4.720  1.00  0.00              
ATOM     92  O   ALA B  25      16.931  40.534   4.513  1.00  0.00              
ATOM     93  N   ASN B  26      18.188  38.827   3.746  1.00  0.00              
ATOM     94  CA  ASN B  26      17.978  39.177   2.353  1.00  0.00              
ATOM     95  C   ASN B  26      18.268  40.634   2.026  1.00  0.00              
ATOM     96  O   ASN B  26      17.537  41.269   1.251  1.00  0.00              
ATOM     97  N   ILE B  27      19.329  41.169   2.627  1.00  0.00              
ATOM     98  CA  ILE B  27      19.748  42.559   2.420  1.00  0.00              
ATOM     99  C   ILE B  27      21.256  42.477   2.223  1.00  0.00              
ATOM    100  O   ILE B  27      21.847  41.451   2.542  1.00  0.00              
ATOM    101  N   SER B  28      21.885  43.518   1.683  1.00  0.00              
ATOM    102  CA  SER B  28      23.326  43.454   1.481  1.00  0.00              
ATOM    103  C   SER B  28      24.067  43.515   2.778  1.00  0.00              
ATOM    104  O   SER B  28      23.509  43.881   3.800  1.00  0.00              
ATOM    105  N   PRO B  29      25.341  43.142   2.767  1.00  0.00              
ATOM    106  CA  PRO B  29      26.128  43.187   3.997  1.00  0.00              
ATOM    107  C   PRO B  29      26.391  44.654   4.368  1.00  0.00              
ATOM    108  O   PRO B  29      26.549  44.977   5.549  1.00  0.00              
ATOM    109  N   GLU B  30      26.451  45.551   3.368  1.00  0.00              
ATOM    110  CA  GLU B  30      26.641  46.986   3.670  1.00  0.00              
ATOM    111  C   GLU B  30      25.450  47.425   4.489  1.00  0.00              
ATOM    112  O   GLU B  30      25.618  48.086   5.501  1.00  0.00              
ATOM    113  N   GLU B  31      24.252  47.018   4.059  1.00  0.00              
ATOM    114  CA  GLU B  31      23.044  47.338   4.795  1.00  0.00              
ATOM    115  C   GLU B  31      23.153  46.878   6.240  1.00  0.00              
ATOM    116  O   GLU B  31      22.820  47.630   7.175  1.00  0.00              
ATOM    117  N   ILE B  32      23.645  45.661   6.442  1.00  0.00              
ATOM    118  CA  ILE B  32      23.768  45.181   7.807  1.00  0.00              
ATOM    119  C   ILE B  32      24.881  45.906   8.529  1.00  0.00              
ATOM    120  O   ILE B  32      24.787  46.130   9.742  1.00  0.00              
ATOM    121  N   ARG B  33      25.877  46.379   7.782  1.00  0.00              
ATOM    122  CA  ARG B  33      26.978  47.103   8.404  1.00  0.00              
ATOM    123  C   ARG B  33      26.450  48.409   8.999  1.00  0.00              
ATOM    124  O   ARG B  33      26.598  48.678  10.201  1.00  0.00              
ATOM    125  N   LYS B  34      25.802  49.201   8.154  1.00  0.00              
ATOM    126  CA  LYS B  34      25.233  50.441   8.602  1.00  0.00              
ATOM    127  C   LYS B  34      24.176  50.246   9.680  1.00  0.00              
ATOM    128  O   LYS B  34      24.071  51.105  10.558  1.00  0.00              
ATOM    129  N   TYR B  35      23.451  49.106   9.670  1.00  0.00              
ATOM    130  CA  TYR B  35      22.420  48.812  10.694  1.00  0.00              
ATOM    131  C   TYR B  35      23.058  48.635  12.053  1.00  0.00              
ATOM    132  O   TYR B  35      22.553  49.124  13.039  1.00  0.00              
ATOM    133  N   LEU B  36      24.160  47.912  12.121  1.00  0.00              
ATOM    134  CA  LEU B  36      24.834  47.727  13.396  1.00  0.00              
ATOM    135  C   LEU B  36      25.452  49.013  13.843  1.00  0.00              
ATOM    136  O   LEU B  36      25.414  49.349  15.016  1.00  0.00              
ATOM    137  N   LEU B  37      26.002  49.751  12.888  1.00  0.00              
ATOM    138  CA  LEU B  37      26.615  51.040  13.179  1.00  0.00              
ATOM    139  C   LEU B  37      25.554  51.961  13.801  1.00  0.00              
ATOM    140  O   LEU B  37      25.726  52.409  14.947  1.00  0.00              
ATOM    141  N   LEU B  38      24.409  52.123  13.124  1.00  0.00              
ATOM    142  CA  LEU B  38      23.296  52.962  13.608  1.00  0.00              
ATOM    143  C   LEU B  38      22.717  52.456  14.921  1.00  0.00              
ATOM    144  O   LEU B  38      22.527  53.220  15.891  1.00  0.00              
ATOM    145  N   ASN B  39      22.542  51.146  15.000  1.00  0.00              
ATOM    146  CA  ASN B  39      22.026  50.538  16.212  1.00  0.00              
ATOM    147  C   ASN B  39      22.960  50.859  17.375  1.00  0.00              
ATOM    148  O   ASN B  39      22.519  51.257  18.434  1.00  0.00              
ATOM    149  N   LYS B  40      24.260  50.697  17.186  1.00  0.00              
ATOM    150  CA  LYS B  40      25.184  50.999  18.268  1.00  0.00              
ATOM    151  C   LYS B  40      25.143  52.484  18.560  1.00  0.00              
ATOM    152  O   LYS B  40      25.215  52.873  19.697  1.00  0.00              
ATOM    153  N   LYS B  41      25.026  53.317  17.538  1.00  0.00              
ATOM    154  CA  LYS B  41      24.975  54.753  17.762  1.00  0.00              
ATOM    155  C   LYS B  41      23.740  55.212  18.534  1.00  0.00              
ATOM    156  O   LYS B  41      23.783  56.171  19.317  1.00  0.00              
ATOM    157  N   SER B  42      22.640  54.511  18.336  1.00  0.00              
ATOM    158  CA  SER B  42      21.433  54.930  18.957  1.00  0.00              
ATOM    159  C   SER B  42      20.976  54.119  20.117  1.00  0.00              
ATOM    160  O   SER B  42      20.105  54.561  20.843  1.00  0.00              
ATOM    161  N   ALA B  43      21.563  52.945  20.313  1.00  0.00              
ATOM    162  CA  ALA B  43      21.154  52.054  21.401  1.00  0.00              
ATOM    163  C   ALA B  43      21.463  52.617  22.776  1.00  0.00              
ATOM    164  O   ALA B  43      22.254  53.587  22.860  1.00  0.00              
END
