PFRMAT SS 
TARGET T0065 
AUTHOR 1751-3146-3362 
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded4-trained.net 
METHOD This is a 4-layer network, with  
METHOD	window	units 
METHOD	    9	    6 
METHOD	   11	    9 
METHOD	    3	    8 
METHOD	    7	    3 (1 EHL ) 
METHOD The input amino acid frequencies were determined from 
METHOD alignment t65.t98_6.a2m.gz 
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5) 
METHOD The weighting was determined by the posterior distribution 
METHOD after regularizing with recode3.20comp. 
METHOD Counts were regularized to probabilities using 
METHOD /projects/compbio/lib/recode3.20comp 
METHOD Total sequence weight for alignment was 5.12005 
METHOD 
MODEL 1 
M C 0.83 
K C 0.88 
N C 0.86 
A C 0.81 
K C 0.70 
Q C 0.64 
E C 0.57 
H C 0.52 
F C 0.54 
E C 0.66 
L C 0.55 
D H 0.79 
Q H 0.97 
E H 0.98 
W H 0.99 
V H 0.99 
E H 1.00 
L H 1.00 
M H 0.99 
V H 0.99 
E H 0.97 
A H 0.92 
K H 0.80 
E H 0.52 
A C 0.82 
N C 0.83 
I C 0.84 
S C 0.89 
P H 0.82 
E H 0.97 
E H 0.97 
I H 0.98 
R H 0.98 
K H 0.99 
Y H 0.98 
L H 0.95 
L H 0.89 
L H 0.82 
N H 0.63 
K H 0.49 
K C 0.63 
S C 0.74 
A C 0.84 
H C 0.92 
P C 0.90 
G C 0.89 
P C 0.67 
A C 0.50 
A C 0.50 
R C 0.47 
S C 0.65 
H C 0.85 
T C 0.72 
V C 0.72 
N C 0.89 
P C 0.77 
F C 0.69 
END 
