PFRMAT TS   
TARGET T0065 
AUTHOR 2410-6622-2807 
METHOD Calculations were done using the "sausage" program. 
METHOD This used a two step threading approach.  The first 
METHOD score function (Huber and Torda, Protein Sci, submitted) is 
METHOD for alignment to each member of a library.  This does not use 
METHOD the frozen approximation.  The second score function (Huber and 
METHOD Torda, Protein Sci, 7, 142-149) is built by optimising the difference 
METHOD between native and non-native structure scores. 
METHOD Specific parameters for this calculation are rather voluminous, 
METHOD so they are listed under remarks. 
MODEL 1 
PARENT 1ecm_A 
ATOM      1  N   MET B   1      30.286  44.419  15.628  1.00  2.55 
ATOM      2  CA  MET B   1      29.821  43.586  14.510  1.00  2.55 
ATOM      3  C   MET B   1      28.299  43.684  14.394  1.00  2.55 
ATOM      4  O   MET B   1      27.756  43.886  13.298  1.00  2.55 
ATOM      5  CB  MET B   1      30.290  42.148  14.677  1.00  2.55 
ATOM      6  CG  MET B   1      31.783  42.039  14.490  1.00  2.55 
ATOM      7  SD  MET B   1      32.240  40.288  14.755  1.00  2.55 
ATOM      8  CE  MET B   1      31.549  39.559  13.259  1.00  2.55 
ATOM      9  N   LYS B   2      27.700  44.232  15.453  1.00  1.35 
ATOM     10  CA  LYS B   2      26.245  44.428  15.528  1.00  1.35 
ATOM     11  C   LYS B   2      25.534  43.095  15.289  1.00  1.35 
ATOM     12  O   LYS B   2      24.621  42.717  16.038  1.00  1.35 
ATOM     13  CB  LYS B   2      25.763  45.445  14.499  1.00  1.35 
ATOM     14  CG  LYS B   2      26.227  46.877  14.771  1.00  1.35 
ATOM     15  CD  LYS B   2      25.712  47.838  13.709  1.00  1.35 
ATOM     16  CE  LYS B   2      26.171  49.260  13.953  1.00  1.35 
ATOM     17  NZ  LYS B   2      25.679  50.159  12.879  1.00  1.35 
ATOM     18  N   ASN B   3      25.803  42.107  16.033  1.00  1.23 
ATOM     19  CA  ASN B   3      25.117  40.810  15.959  1.00  1.23 
ATOM     20  C   ASN B   3      24.192  40.648  17.166  1.00  1.23 
ATOM     21  O   ASN B   3      23.020  40.266  17.023  1.00  1.23 
ATOM     22  CB  ASN B   3      26.106  39.669  15.766  1.00  1.23 
ATOM     23  CG  ASN B   3      26.814  39.702  14.424  1.00  1.23 
ATOM     24  OD1 ASN B   3      26.168  39.696  13.366  1.00  1.23 
ATOM     25  ND2 ASN B   3      28.145  39.749  14.461  1.00  1.23 
ATOM     26  N   ALA B   4      23.159  39.920  17.126  1.00  1.00 
ATOM     27  CA  ALA B   4      22.260  39.786  18.281  1.00  1.00 
ATOM     28  C   ALA B   4      22.922  38.913  19.348  1.00  1.00 
ATOM     29  O   ALA B   4      22.940  39.265  20.537  1.00  1.00 
ATOM     30  CB  ALA B   4      20.886  39.265  17.825  1.00  1.00 
ATOM     31  N   LYS B   5      22.594  39.141  20.632  1.00  1.26 
ATOM     32  CA  LYS B   5      23.153  38.389  21.764  1.00  1.26 
ATOM     33  C   LYS B   5      22.806  36.907  21.617  1.00  1.26 
ATOM     34  O   LYS B   5      23.673  36.032  21.765  1.00  1.26 
ATOM     35  CB  LYS B   5      22.616  38.900  23.097  1.00  1.26 
ATOM     36  CG  LYS B   5      21.116  38.671  23.295  1.00  1.26 
ATOM     37  CD  LYS B   5      20.641  39.231  24.627  1.00  1.26 
ATOM     38  CE  LYS B   5      19.162  38.997  24.852  1.00  1.26 
ATOM     39  NZ  LYS B   5      18.736  39.566  26.155  1.00  1.26 
ATOM     40  N   GLN B   6      21.583  36.574  21.614  1.00  2.43 
ATOM     41  CA  GLN B   6      21.192  35.158  21.578  1.00  2.43 
ATOM     42  C   GLN B   6      21.470  34.584  20.188  1.00  2.43 
ATOM     43  O   GLN B   6      22.057  33.500  20.052  1.00  2.43 
ATOM     44  CB  GLN B   6      19.737  34.945  21.985  1.00  2.43 
ATOM     45  CG  GLN B   6      19.456  35.246  23.446  1.00  2.43 
ATOM     46  CD  GLN B   6      18.001  35.090  23.811  1.00  2.43 
ATOM     47  OE1 GLN B   6      17.152  34.769  22.984  1.00  2.43 
ATOM     48  NE2 GLN B   6      17.708  35.336  25.087  1.00  2.43 
ATOM     49  N   GLU B   7      22.023  33.297  20.309  1.00  1.66 
ATOM     50  CA  GLU B   7      22.340  32.480  19.129  1.00  1.66 
ATOM     51  C   GLU B   7      22.013  31.014  19.416  1.00  1.66 
ATOM     52  O   GLU B   7      21.369  30.334  18.603  1.00  1.66 
ATOM     53  CB  GLU B   7      23.829  32.551  18.783  1.00  1.66 
ATOM     54  CG  GLU B   7      24.380  33.881  18.285  1.00  1.66 
ATOM     55  CD  GLU B   7      25.854  33.925  18.017  1.00  1.66 
ATOM     56  OE1 GLU B   7      26.611  32.987  18.196  1.00  1.66 
ATOM     57  OE2 GLU B   7      26.226  35.041  17.595  1.00  1.66 
ATOM     58  N   HIS B   8      20.700  30.772  19.437  1.00  1.06 
ATOM     59  CA  HIS B   8      20.229  29.439  19.837  1.00  1.06 
ATOM     60  C   HIS B   8      21.002  28.368  19.066  1.00  1.06 
ATOM     61  O   HIS B   8      21.489  27.389  19.650  1.00  1.06 
ATOM     62  CB  HIS B   8      18.714  29.233  19.608  1.00  1.06 
ATOM     63  CG  HIS B   8      17.872  30.135  20.461  1.00  1.06 
ATOM     64  ND1 HIS B   8      17.316  31.310  20.024  1.00  1.06 
ATOM     65  CD2 HIS B   8      17.397  29.939  21.716  1.00  1.06 
ATOM     66  CE1 HIS B   8      16.537  31.802  20.974  1.00  1.06 
ATOM     67  NE2 HIS B   8      16.565  30.987  22.005  1.00  1.06 
ATOM     68  N   PHE B   9      21.469  28.577  17.928  1.00  2.01 
ATOM     69  CA  PHE B   9      22.185  27.515  17.207  1.00  2.01 
ATOM     70  C   PHE B   9      23.524  27.241  17.893  1.00  2.01 
ATOM     71  O   PHE B   9      23.887  26.082  18.143  1.00  2.01 
ATOM     72  CB  PHE B   9      22.316  27.795  15.720  1.00  2.01 
ATOM     73  CG  PHE B   9      21.035  27.805  14.939  1.00  2.01 
ATOM     74  CD1 PHE B   9      20.405  29.016  14.648  1.00  2.01 
ATOM     75  CD2 PHE B   9      20.475  26.613  14.484  1.00  2.01 
ATOM     76  CE1 PHE B   9      19.221  29.049  13.928  1.00  2.01 
ATOM     77  CE2 PHE B   9      19.281  26.622  13.753  1.00  2.01 
ATOM     78  CZ  PHE B   9      18.650  27.850  13.493  1.00  2.01 
ATOM     79  N   GLU B  10      24.282  28.170  18.246  1.00  2.37 
ATOM     80  CA  GLU B  10      25.576  27.914  18.895  1.00  2.37 
ATOM     81  C   GLU B  10      25.353  27.160  20.206  1.00  2.37 
ATOM     82  O   GLU B  10      26.027  26.157  20.487  1.00  2.37 
ATOM     83  CB  GLU B  10      26.295  29.219  19.242  1.00  2.37 
ATOM     84  CG  GLU B  10      27.696  29.122  19.835  1.00  2.37 
ATOM     85  CD  GLU B  10      28.369  30.425  20.149  1.00  2.37 
ATOM     86  OE1 GLU B  10      27.870  31.519  19.955  1.00  2.37 
ATOM     87  OE2 GLU B  10      29.513  30.262  20.628  1.00  2.37 
ATOM     88  N   LEU B  11      24.273  27.558  20.901  1.00  1.00 
ATOM     89  CA  LEU B  11      23.928  26.891  22.164  1.00  1.00 
ATOM     90  C   LEU B  11      23.605  25.420  21.897  1.00  1.00 
ATOM     91  O   LEU B  11      24.100  24.523  22.595  1.00  1.00 
ATOM     92  CB  LEU B  11      22.778  27.676  22.804  1.00  1.00 
ATOM     93  CG  LEU B  11      23.076  29.096  23.258  1.00  1.00 
ATOM     94  CD1 LEU B  11      21.780  29.727  23.762  1.00  1.00 
ATOM     95  CD2 LEU B  11      23.649  29.925  22.115  1.00  1.00 
ATOM     96  N   ASP B  12      23.005  25.073  20.844  1.00  1.62 
ATOM     97  CA  ASP B  12      22.659  23.667  20.596  1.00  1.62 
ATOM     98  C   ASP B  12      23.937  22.850  20.399  1.00  1.62 
ATOM     99  O   ASP B  12      24.102  21.774  20.991  1.00  1.62 
ATOM    100  CB  ASP B  12      21.647  23.536  19.467  1.00  1.62 
ATOM    101  CG  ASP B  12      20.249  23.984  19.852  1.00  1.62 
ATOM    102  OD1 ASP B  12      19.958  24.204  21.037  1.00  1.62 
ATOM    103  OD2 ASP B  12      19.435  24.122  18.914  1.00  1.62 
ATOM    104  N   GLN B  13      24.860  23.338  19.636  1.00  2.18 
ATOM    105  CA  GLN B  13      26.093  22.592  19.347  1.00  2.18 
ATOM    106  C   GLN B  13      26.971  22.545  20.599  1.00  2.18 
ATOM    107  O   GLN B  13      27.479  21.481  20.981  1.00  2.18 
ATOM    108  CB  GLN B  13      26.855  23.166  18.157  1.00  2.18 
ATOM    109  CG  GLN B  13      26.111  23.059  16.839  1.00  2.18 
ATOM    110  CD  GLN B  13      25.827  21.633  16.436  1.00  2.18 
ATOM    111  OE1 GLN B  13      26.720  20.799  16.315  1.00  2.18 
ATOM    112  NE2 GLN B  13      24.545  21.353  16.210  1.00  2.18 
ATOM    113  N   GLU B  14      26.996  23.546  21.317  1.00  1.82 
ATOM    114  CA  GLU B  14      27.815  23.653  22.532  1.00  1.82 
ATOM    115  C   GLU B  14      27.339  22.630  23.565  1.00  1.82 
ATOM    116  O   GLU B  14      28.148  21.904  24.161  1.00  1.82 
ATOM    117  CB  GLU B  14      27.685  25.036  23.174  1.00  1.82 
ATOM    118  CG  GLU B  14      28.258  26.227  22.416  1.00  1.82 
ATOM    119  CD  GLU B  14      28.055  27.571  23.049  1.00  1.82 
ATOM    120  OE1 GLU B  14      27.452  27.752  24.093  1.00  1.82 
ATOM    121  OE2 GLU B  14      28.568  28.493  22.378  1.00  1.82 
ATOM    122  N   TRP B  15      26.005  22.588  23.721  1.00  1.00 
ATOM    123  CA  TRP B  15      25.406  21.634  24.665  1.00  1.00 
ATOM    124  C   TRP B  15      25.611  20.207  24.154  1.00  1.00 
ATOM    125  O   TRP B  15      26.031  19.315  24.906  1.00  1.00 
ATOM    126  CB  TRP B  15      23.939  21.962  24.918  1.00  1.00 
ATOM    127  CG  TRP B  15      23.242  21.055  25.871  1.00  1.00 
ATOM    128  CD1 TRP B  15      23.239  21.123  27.237  1.00  1.00 
ATOM    129  CD2 TRP B  15      22.420  19.928  25.527  1.00  1.00 
ATOM    130  NE1 TRP B  15      22.471  20.111  27.763  1.00  1.00 
ATOM    131  CE2 TRP B  15      21.960  19.365  26.739  1.00  1.00 
ATOM    132  CE3 TRP B  15      22.036  19.358  24.318  1.00  1.00 
ATOM    133  CZ2 TRP B  15      21.131  18.252  26.770  1.00  1.00 
ATOM    134  CZ3 TRP B  15      21.214  18.250  24.349  1.00  1.00 
ATOM    135  CH2 TRP B  15      20.766  17.706  25.550  1.00  1.00 
ATOM    136  N   VAL B  16      25.349  19.950  22.943  1.00  1.00 
ATOM    137  CA  VAL B  16      25.521  18.587  22.421  1.00  1.00 
ATOM    138  C   VAL B  16      26.963  18.129  22.645  1.00  1.00 
ATOM    139  O   VAL B  16      27.209  17.014  23.128  1.00  1.00 
ATOM    140  CB  VAL B  16      25.077  18.524  20.949  1.00  1.00 
ATOM    141  CG1 VAL B  16      25.328  17.159  20.317  1.00  1.00 
ATOM    142  CG2 VAL B  16      23.623  18.938  20.780  1.00  1.00 
ATOM    143  N   GLU B  17      27.922  18.957  22.373  1.00  1.61 
ATOM    144  CA  GLU B  17      29.338  18.602  22.544  1.00  1.61 
ATOM    145  C   GLU B  17      29.609  18.263  24.010  1.00  1.61 
ATOM    146  O   GLU B  17      30.241  17.243  24.322  1.00  1.61 
ATOM    147  CB  GLU B  17      30.256  19.769  22.173  1.00  1.61 
ATOM    148  CG  GLU B  17      30.310  20.193  20.711  1.00  1.61 
ATOM    149  CD  GLU B  17      31.173  21.379  20.401  1.00  1.61 
ATOM    150  OE1 GLU B  17      31.792  22.014  21.237  1.00  1.61 
ATOM    151  OE2 GLU B  17      31.180  21.653  19.181  1.00  1.61 
ATOM    152  N   LEU B  18      29.131  19.049  24.929  1.00  1.23 
ATOM    153  CA  LEU B  18      29.345  18.805  26.362  1.00  1.23 
ATOM    154  C   LEU B  18      28.651  17.505  26.771  1.00  1.23 
ATOM    155  O   LEU B  18      29.243  16.654  27.452  1.00  1.23 
ATOM    156  CB  LEU B  18      28.852  20.041  27.121  1.00  1.23 
ATOM    157  CG  LEU B  18      29.042  20.049  28.629  1.00  1.23 
ATOM    158  CD1 LEU B  18      30.539  20.018  28.931  1.00  1.23 
ATOM    159  CD2 LEU B  18      28.356  18.851  29.273  1.00  1.23 
ATOM    160  N   MET B  19      27.499  17.242  26.293  1.00  1.00 
ATOM    161  CA  MET B  19      26.795  16.003  26.652  1.00  1.00 
ATOM    162  C   MET B  19      27.610  14.796  26.186  1.00  1.00 
ATOM    163  O   MET B  19      27.822  13.839  26.945  1.00  1.00 
ATOM    164  CB  MET B  19      25.385  15.997  26.079  1.00  1.00 
ATOM    165  CG  MET B  19      24.641  14.748  26.480  1.00  1.00 
ATOM    166  SD  MET B  19      22.959  14.863  25.771  1.00  1.00 
ATOM    167  CE  MET B  19      23.338  14.590  24.031  1.00  1.00 
ATOM    168  N   VAL B  20      28.250  14.898  25.014  1.00  1.00 
ATOM    169  CA  VAL B  20      29.113  13.854  24.443  1.00  1.00 
ATOM    170  C   VAL B  20      30.362  13.689  25.310  1.00  1.00 
ATOM    171  O   VAL B  20      30.751  12.564  25.659  1.00  1.00 
ATOM    172  CB  VAL B  20      29.424  14.172  22.970  1.00  1.00 
ATOM    173  CG1 VAL B  20      30.401  13.181  22.348  1.00  1.00 
ATOM    174  CG2 VAL B  20      28.157  14.277  22.136  1.00  1.00 
ATOM    175  N   GLU B  21      31.056  14.787  25.569  1.00  1.50 
ATOM    176  CA  GLU B  21      32.252  14.726  26.421  1.00  1.50 
ATOM    177  C   GLU B  21      31.870  14.201  27.805  1.00  1.50 
ATOM    178  O   GLU B  21      32.531  13.305  28.351  1.00  1.50 
ATOM    179  CB  GLU B  21      32.869  16.112  26.619  1.00  1.50 
ATOM    180  CG  GLU B  21      33.496  16.790  25.407  1.00  1.50 
ATOM    181  CD  GLU B  21      34.033  18.172  25.630  1.00  1.50 
ATOM    182  OE1 GLU B  21      33.971  18.769  26.690  1.00  1.50 
ATOM    183  OE2 GLU B  21      34.546  18.652  24.596  1.00  1.50 
ATOM    184  N   ALA B  22      30.737  14.591  28.287  1.00  1.00 
ATOM    185  CA  ALA B  22      30.285  14.183  29.625  1.00  1.00 
ATOM    186  C   ALA B  22      30.080  12.668  29.658  1.00  1.00 
ATOM    187  O   ALA B  22      30.540  11.983  30.584  1.00  1.00 
ATOM    188  CB  ALA B  22      29.034  14.982  30.028  1.00  1.00 
ATOM    189  N   LYS B  23      29.586  12.020  28.799  1.00  1.13 
ATOM    190  CA  LYS B  23      29.316  10.582  28.935  1.00  1.13 
ATOM    191  C   LYS B  23      30.613   9.845  29.271  1.00  1.13 
ATOM    192  O   LYS B  23      30.654   9.013  30.190  1.00  1.13 
ATOM    193  CB  LYS B  23      28.726   9.999  27.655  1.00  1.13 
ATOM    194  CG  LYS B  23      27.314  10.495  27.336  1.00  1.13 
ATOM    195  CD  LYS B  23      26.786   9.876  26.051  1.00  1.13 
ATOM    196  CE  LYS B  23      25.394  10.363  25.710  1.00  1.13 
ATOM    197  NZ  LYS B  23      24.929   9.766  24.433  1.00  1.13 
ATOM    198  N   GLU B  24      31.700  10.343  28.734  1.00  1.49 
ATOM    199  CA  GLU B  24      33.026   9.771  29.006  1.00  1.49 
ATOM    200  C   GLU B  24      33.356   9.923  30.491  1.00  1.49 
ATOM    201  O   GLU B  24      33.797   8.967  31.147  1.00  1.49 
ATOM    202  CB  GLU B  24      34.121  10.499  28.223  1.00  1.49 
ATOM    203  CG  GLU B  24      34.125  10.354  26.706  1.00  1.49 
ATOM    204  CD  GLU B  24      35.176  11.134  25.973  1.00  1.49 
ATOM    205  OE1 GLU B  24      35.983  11.871  26.512  1.00  1.49 
ATOM    206  OE2 GLU B  24      35.126  10.948  24.738  1.00  1.49 
ATOM    207  N   ALA B  25      32.877  11.004  31.112  1.00  1.00 
ATOM    208  CA  ALA B  25      33.098  11.315  32.531  1.00  1.00 
ATOM    209  C   ALA B  25      31.998  10.671  33.376  1.00  1.00 
ATOM    210  O   ALA B  25      32.275  10.025  34.397  1.00  1.00 
ATOM    211  CB  ALA B  25      33.214  12.837  32.727  1.00  1.00 
ATOM    212  N   ASN B  26      31.044  10.090  32.753  1.00  1.70 
ATOM    213  CA  ASN B  26      29.926   9.439  33.451  1.00  1.70 
ATOM    214  C   ASN B  26      29.011  10.502  34.060  1.00  1.70 
ATOM    215  O   ASN B  26      27.781  10.444  33.913  1.00  1.70 
ATOM    216  CB  ASN B  26      30.422   8.394  34.439  1.00  1.70 
ATOM    217  CG  ASN B  26      31.087   7.201  33.776  1.00  1.70 
ATOM    218  OD1 ASN B  26      30.480   6.525  32.934  1.00  1.70 
ATOM    219  ND2 ASN B  26      32.342   6.945  34.146  1.00  1.70 
ATOM    220  N   ILE B  27      28.897  11.559  33.432  1.00  1.00 
ATOM    221  CA  ILE B  27      27.999  12.651  33.834  1.00  1.00 
ATOM    222  C   ILE B  27      26.771  12.669  32.923  1.00  1.00 
ATOM    223  O   ILE B  27      25.628  12.755  33.396  1.00  1.00 
ATOM    224  CB  ILE B  27      28.772  14.018  33.807  1.00  1.00 
ATOM    225  CG1 ILE B  27      29.908  13.988  34.860  1.00  1.00 
ATOM    226  CG2 ILE B  27      27.903  15.294  33.932  1.00  1.00 
ATOM    227  CD1 ILE B  27      30.894  15.185  34.769  1.00  1.00 
ATOM    228  N   SER B  28      25.647  12.458  33.335  1.00  1.16 
ATOM    229  CA  SER B  28      24.477  12.325  32.456  1.00  1.16 
ATOM    230  C   SER B  28      24.110  13.693  31.879  1.00  1.16 
ATOM    231  O   SER B  28      23.885  13.834  30.668  1.00  1.16 
ATOM    232  CB  SER B  28      23.300  11.702  33.187  1.00  1.16 
ATOM    233  OG  SER B  28      22.859  12.514  34.259  1.00  1.16 
ATOM    234  N   PRO B  29      23.357  13.487  30.694  1.00  1.00 
ATOM    235  CA  PRO B  29      22.831  14.614  29.911  1.00  1.00 
ATOM    236  C   PRO B  29      21.878  15.440  30.776  1.00  1.00 
ATOM    237  O   PRO B  29      21.968  16.676  30.821  1.00  1.00 
ATOM    238  CB  PRO B  29      22.079  13.923  28.765  1.00  1.00 
ATOM    239  CG  PRO B  29      21.636  12.611  29.353  1.00  1.00 
ATOM    240  CD  PRO B  29      22.757  12.205  30.300  1.00  1.00 
ATOM    241  N   GLU B  30      21.079  14.972  31.578  1.00  2.80 
ATOM    242  CA  GLU B  30      20.113  15.810  32.302  1.00  2.80 
ATOM    243  C   GLU B  30      20.861  16.844  33.146  1.00  2.80 
ATOM    244  O   GLU B  30      20.529  18.038  33.130  1.00  2.80 
ATOM    245  CB  GLU B  30      19.259  14.978  33.260  1.00  2.80 
ATOM    246  CG  GLU B  30      18.276  13.982  32.655  1.00  2.80 
ATOM    247  CD  GLU B  30      17.504  13.143  33.629  1.00  2.80 
ATOM    248  OE1 GLU B  30      17.638  13.200  34.838  1.00  2.80 
ATOM    249  OE2 GLU B  30      16.709  12.367  33.057  1.00  2.80 
ATOM    250  N   GLU B  31      21.707  16.415  33.964  1.00  1.37 
ATOM    251  CA  GLU B  31      22.462  17.288  34.874  1.00  1.37 
ATOM    252  C   GLU B  31      23.280  18.292  34.061  1.00  1.37 
ATOM    253  O   GLU B  31      23.275  19.498  34.348  1.00  1.37 
ATOM    254  CB  GLU B  31      23.448  16.488  35.727  1.00  1.37 
ATOM    255  CG  GLU B  31      22.875  15.530  36.765  1.00  1.37 
ATOM    256  CD  GLU B  31      23.874  14.720  37.536  1.00  1.37 
ATOM    257  OE1 GLU B  31      25.079  14.770  37.360  1.00  1.37 
ATOM    258  OE2 GLU B  31      23.329  13.975  38.379  1.00  1.37 
ATOM    259  N   ILE B  32      23.939  17.835  33.003  1.00  1.02 
ATOM    260  CA  ILE B  32      24.737  18.755  32.181  1.00  1.02 
ATOM    261  C   ILE B  32      23.820  19.795  31.536  1.00  1.02 
ATOM    262  O   ILE B  32      24.103  21.002  31.568  1.00  1.02 
ATOM    263  CB  ILE B  32      25.554  17.947  31.111  1.00  1.02 
ATOM    264  CG1 ILE B  32      26.570  17.023  31.829  1.00  1.02 
ATOM    265  CG2 ILE B  32      26.224  18.782  29.991  1.00  1.02 
ATOM    266  CD1 ILE B  32      27.271  15.998  30.895  1.00  1.02 
ATOM    267  N   ARG B  33      22.734  19.398  30.984  1.00  1.58 
ATOM    268  CA  ARG B  33      21.824  20.333  30.308  1.00  1.58 
ATOM    269  C   ARG B  33      21.366  21.408  31.295  1.00  1.58 
ATOM    270  O   ARG B  33      21.390  22.608  30.986  1.00  1.58 
ATOM    271  CB  ARG B  33      20.610  19.608  29.724  1.00  1.58 
ATOM    272  CG  ARG B  33      19.656  19.026  30.758  1.00  1.58 
ATOM    273  CD  ARG B  33      18.469  18.391  30.116  1.00  1.58 
ATOM    274  NE  ARG B  33      18.828  17.202  29.356  1.00  1.58 
ATOM    275  CZ  ARG B  33      17.972  16.556  28.560  1.00  1.58 
ATOM    276  NH1 ARG B  33      16.674  16.842  28.560  1.00  1.58 
ATOM    277  NH2 ARG B  33      18.422  15.566  27.789  1.00  1.58 
ATOM    278  N   LYS B  34      20.864  20.970  32.435  1.00  1.18 
ATOM    279  CA  LYS B  34      20.385  21.906  33.462  1.00  1.18 
ATOM    280  C   LYS B  34      21.529  22.825  33.894  1.00  1.18 
ATOM    281  O   LYS B  34      21.364  24.051  33.976  1.00  1.18 
ATOM    282  CB  LYS B  34      19.846  21.169  34.683  1.00  1.18 
ATOM    283  CG  LYS B  34      18.554  20.391  34.424  1.00  1.18 
ATOM    284  CD  LYS B  34      18.072  19.682  35.680  1.00  1.18 
ATOM    285  CE  LYS B  34      16.800  18.896  35.442  1.00  1.18 
ATOM    286  NZ  LYS B  34      16.382  18.190  36.679  1.00  1.18 
ATOM    287  N   TYR B  35      22.595  22.353  34.262  1.00  1.86 
ATOM    288  CA  TYR B  35      23.674  23.204  34.783  1.00  1.86 
ATOM    289  C   TYR B  35      24.121  24.187  33.700  1.00  1.86 
ATOM    290  O   TYR B  35      24.262  25.393  33.953  1.00  1.86 
ATOM    291  CB  TYR B  35      24.854  22.348  35.275  1.00  1.86 
ATOM    292  CG  TYR B  35      26.010  23.140  35.841  1.00  1.86 
ATOM    293  CD1 TYR B  35      25.961  23.684  37.127  1.00  1.86 
ATOM    294  CD2 TYR B  35      27.148  23.379  35.071  1.00  1.86 
ATOM    295  CE1 TYR B  35      27.013  24.448  37.630  1.00  1.86 
ATOM    296  CE2 TYR B  35      28.202  24.148  35.554  1.00  1.86 
ATOM    297  CZ  TYR B  35      28.125  24.694  36.828  1.00  1.86 
ATOM    298  OH  TYR B  35      29.157  25.485  37.250  1.00  1.86 
ATOM    299  N   LEU B  36      24.360  23.738  32.511  1.00  1.16 
ATOM    300  CA  LEU B  36      24.855  24.647  31.467  1.00  1.16 
ATOM    301  C   LEU B  36      23.728  25.579  31.020  1.00  1.16 
ATOM    302  O   LEU B  36      23.914  26.800  30.917  1.00  1.16 
ATOM    303  CB  LEU B  36      25.437  23.787  30.340  1.00  1.16 
ATOM    304  CG  LEU B  36      26.672  22.962  30.665  1.00  1.16 
ATOM    305  CD1 LEU B  36      27.018  22.106  29.449  1.00  1.16 
ATOM    306  CD2 LEU B  36      26.430  22.071  31.877  1.00  1.16 
ATOM    307  N   LEU B  37      22.590  25.305  30.972  1.00  1.01 
ATOM    308  CA  LEU B  37      21.559  26.253  30.527  1.00  1.01 
ATOM    309  C   LEU B  37      21.542  27.468  31.456  1.00  1.01 
ATOM    310  O   LEU B  37      21.528  28.620  30.998  1.00  1.01 
ATOM    311  CB  LEU B  37      20.228  25.496  30.466  1.00  1.01 
ATOM    312  CG  LEU B  37      19.019  26.261  29.954  1.00  1.01 
ATOM    313  CD1 LEU B  37      19.273  26.656  28.500  1.00  1.01 
ATOM    314  CD2 LEU B  37      18.764  27.505  30.795  1.00  1.01 
ATOM    315  N   LEU B  38      21.864  27.230  32.727  1.00  1.05 
ATOM    316  CA  LEU B  38      21.895  28.287  33.748  1.00  1.05 
ATOM    317  C   LEU B  38      23.102  29.196  33.510  1.00  1.05 
ATOM    318  O   LEU B  38      22.981  30.430  33.519  1.00  1.05 
ATOM    319  CB  LEU B  38      21.888  27.607  35.121  1.00  1.05 
ATOM    320  CG  LEU B  38      21.841  28.511  36.342  1.00  1.05 
ATOM    321  CD1 LEU B  38      20.526  29.288  36.321  1.00  1.05 
ATOM    322  CD2 LEU B  38      23.018  29.478  36.351  1.00  1.05 
ATOM    323  N   ASN B  39      24.234  28.571  33.181  1.00  1.38 
ATOM    324  CA  ASN B  39      25.485  29.286  32.893  1.00  1.38 
ATOM    325  C   ASN B  39      25.320  30.118  31.621  1.00  1.38 
ATOM    326  O   ASN B  39      25.681  31.304  31.584  1.00  1.38 
ATOM    327  CB  ASN B  39      26.675  28.337  32.875  1.00  1.38 
ATOM    328  CG  ASN B  39      26.989  27.735  34.233  1.00  1.38 
ATOM    329  OD1 ASN B  39      27.223  28.461  35.209  1.00  1.38 
ATOM    330  ND2 ASN B  39      26.984  26.404  34.303  1.00  1.38 
ATOM    331  N   LYS B  40      24.629  29.542  30.658  1.00  1.07 
ATOM    332  CA  LYS B  40      24.362  30.238  29.392  1.00  1.07 
ATOM    333  C   LYS B  40      23.342  31.354  29.624  1.00  1.07 
ATOM    334  O   LYS B  40      23.533  32.494  29.177  1.00  1.07 
ATOM    335  CB  LYS B  40      23.827  29.283  28.330  1.00  1.07 
ATOM    336  CG  LYS B  40      24.849  28.253  27.844  1.00  1.07 
ATOM    337  CD  LYS B  40      24.251  27.335  26.788  1.00  1.07 
ATOM    338  CE  LYS B  40      25.243  26.300  26.302  1.00  1.07 
ATOM    339  NZ  LYS B  40      24.613  25.402  25.301  1.00  1.07 
ATOM    340  N   LYS B  41      22.353  31.025  30.470  1.00  1.13 
ATOM    341  CA  LYS B  41      21.319  32.001  30.842  1.00  1.13 
ATOM    342  C   LYS B  41      21.978  33.242  31.445  1.00  1.13 
ATOM    343  O   LYS B  41      21.652  34.380  31.075  1.00  1.13 
ATOM    344  CB  LYS B  41      20.334  31.417  31.849  1.00  1.13 
ATOM    345  CG  LYS B  41      19.173  32.350  32.201  1.00  1.13 
ATOM    346  CD  LYS B  41      18.216  31.697  33.186  1.00  1.13 
ATOM    347  CE  LYS B  41      17.070  32.612  33.563  1.00  1.13 
ATOM    348  NZ  LYS B  41      16.153  31.936  34.515  1.00  1.13 
ATOM    349  N   SER B  42      22.896  32.985  32.363  1.00  2.00 
ATOM    350  CA  SER B  42      23.620  34.091  33.005  1.00  2.00 
ATOM    351  C   SER B  42      24.481  34.813  31.968  1.00  2.00 
ATOM    352  O   SER B  42      24.475  36.050  31.884  1.00  2.00 
ATOM    353  CB  SER B  42      24.459  33.602  34.173  1.00  2.00 
ATOM    354  OG  SER B  42      23.657  33.052  35.201  1.00  2.00 
ATOM    355  N   ALA B  43      25.025  34.063  31.071  1.00  1.00 
ATOM    356  CA  ALA B  43      25.883  34.610  30.010  1.00  1.00 
ATOM    357  C   ALA B  43      25.071  35.565  29.134  1.00  1.00 
ATOM    358  O   ALA B  43      25.513  36.684  28.832  1.00  1.00 
ATOM    359  CB  ALA B  43      26.545  33.466  29.223  1.00  1.00 
ATOM    360  N   HIS B  44      23.872  35.269  28.754  1.00  1.06 
ATOM    361  CA  HIS B  44      23.051  36.150  27.912  1.00  1.06 
ATOM    362  C   HIS B  44      22.662  37.400  28.703  1.00  1.06 
ATOM    363  O   HIS B  44      22.786  38.530  28.209  1.00  1.06 
ATOM    364  CB  HIS B  44      21.769  35.467  27.381  1.00  1.06 
ATOM    365  CG  HIS B  44      22.063  34.326  26.453  1.00  1.06 
ATOM    366  ND1 HIS B  44      22.064  33.007  26.829  1.00  1.06 
ATOM    367  CD2 HIS B  44      22.247  34.334  25.109  1.00  1.06 
ATOM    368  CE1 HIS B  44      22.239  32.251  25.757  1.00  1.06 
ATOM    369  NE2 HIS B  44      22.346  33.029  24.704  1.00  1.06 
ATOM    370  N   PRO B  45      22.379  37.188  30.002  1.00  1.00 
ATOM    371  CA  PRO B  45      22.040  38.290  30.913  1.00  1.00 
ATOM    372  C   PRO B  45      23.212  39.269  30.994  1.00  1.00 
ATOM    373  O   PRO B  45      23.030  40.491  30.886  1.00  1.00 
ATOM    374  CB  PRO B  45      21.820  37.580  32.255  1.00  1.00 
ATOM    375  CG  PRO B  45      22.708  36.367  32.181  1.00  1.00 
ATOM    376  CD  PRO B  45      22.667  35.938  30.720  1.00  1.00 
ATOM    377  N   GLY B  46      24.401  38.694  31.091  1.00  1.00 
ATOM    378  CA  GLY B  46      25.637  39.487  31.152  1.00  1.00 
ATOM    379  C   GLY B  46      25.774  40.323  29.879  1.00  1.00 
ATOM    380  O   GLY B  46      26.058  41.529  29.936  1.00  1.00 
ATOM    381  N   PRO B  47      25.613  39.785  28.733  1.00  1.00 
ATOM    382  CA  PRO B  47      25.807  40.499  27.463  1.00  1.00 
ATOM    383  C   PRO B  47      24.712  41.554  27.294  1.00  1.00 
ATOM    384  O   PRO B  47      24.992  42.714  26.957  1.00  1.00 
ATOM    385  CB  PRO B  47      25.671  39.388  26.413  1.00  1.00 
ATOM    386  CG  PRO B  47      24.747  38.387  27.052  1.00  1.00 
ATOM    387  CD  PRO B  47      25.091  38.426  28.536  1.00  1.00 
ATOM    388  N   ALA B  48      23.525  41.248  27.511  1.00  1.00 
ATOM    389  CA  ALA B  48      22.440  42.221  27.321  1.00  1.00 
ATOM    390  C   ALA B  48      22.653  43.416  28.251  1.00  1.00 
ATOM    391  O   ALA B  48      22.562  44.578  27.826  1.00  1.00 
ATOM    392  CB  ALA B  48      21.075  41.535  27.504  1.00  1.00 
ATOM    393  N   ALA B  49      23.305  43.262  29.290  1.00  1.00 
ATOM    394  CA  ALA B  49      23.540  44.391  30.201  1.00  1.00 
ATOM    395  C   ALA B  49      24.567  45.343  29.585  1.00  1.00 
ATOM    396  O   ALA B  49      24.366  46.566  29.559  1.00  1.00 
ATOM    397  CB  ALA B  49      23.939  43.873  31.594  1.00  1.00 
ATOM    398  N   ARG B  50      25.599  44.688  28.991  1.00  1.62 
ATOM    399  CA  ARG B  50      26.665  45.446  28.321  1.00  1.62 
ATOM    400  C   ARG B  50      26.069  46.273  27.181  1.00  1.62 
ATOM    401  O   ARG B  50      26.360  47.471  27.044  1.00  1.62 
ATOM    402  CB  ARG B  50      27.754  44.519  27.779  1.00  1.62 
ATOM    403  CG  ARG B  50      27.316  43.625  26.626  1.00  1.62 
ATOM    404  CD  ARG B  50      28.426  42.744  26.162  1.00  1.62 
ATOM    405  NE  ARG B  50      28.038  41.928  25.021  1.00  1.62 
ATOM    406  CZ  ARG B  50      28.893  41.153  24.349  1.00  1.62 
ATOM    407  NH1 ARG B  50      30.205  41.227  24.555  1.00  1.62 
ATOM    408  NH2 ARG B  50      28.427  40.328  23.413  1.00  1.62 
ATOM    409  N   SER B  51      25.177  45.658  26.492  1.00  1.60 
ATOM    410  CA  SER B  51      24.560  46.363  25.360  1.00  1.60 
ATOM    411  C   SER B  51      23.733  47.541  25.877  1.00  1.60 
ATOM    412  O   SER B  51      23.835  48.665  25.365  1.00  1.60 
ATOM    413  CB  SER B  51      23.715  45.425  24.515  1.00  1.60 
ATOM    414  OG  SER B  51      24.497  44.406  23.921  1.00  1.60 
ATOM    415  N   HIS B  52      22.942  47.371  26.862  1.00  1.11 
ATOM    416  CA  HIS B  52      22.093  48.470  27.344  1.00  1.11 
ATOM    417  C   HIS B  52      22.968  49.566  27.953  1.00  1.11 
ATOM    418  O   HIS B  52      22.797  50.758  27.653  1.00  1.11 
ATOM    419  CB  HIS B  52      21.046  48.020  28.389  1.00  1.11 
ATOM    420  CG  HIS B  52      20.037  47.065  27.823  1.00  1.11 
ATOM    421  ND1 HIS B  52      20.099  45.703  27.968  1.00  1.11 
ATOM    422  CD2 HIS B  52      18.858  47.323  27.206  1.00  1.11 
ATOM    423  CE1 HIS B  52      19.003  45.162  27.461  1.00  1.11 
ATOM    424  NE2 HIS B  52      18.234  46.122  26.999  1.00  1.11 
ATOM    425  N   THR B  53      24.169  49.437  28.069  1.00  1.02 
ATOM    426  CA  THR B  53      25.049  50.467  28.639  1.00  1.02 
ATOM    427  C   THR B  53      25.739  51.235  27.511  1.00  1.02 
ATOM    428  O   THR B  53      25.776  52.475  27.514  1.00  1.02 
ATOM    429  CB  THR B  53      26.113  49.833  29.621  1.00  1.02 
ATOM    430  OG1 THR B  53      25.349  49.170  30.678  1.00  1.02 
ATOM    431  CG2 THR B  53      27.113  50.845  30.190  1.00  1.02 
ATOM    432  N   VAL B  54      25.301  50.909  26.317  1.00  1.00 
ATOM    433  CA  VAL B  54      25.853  51.535  25.107  1.00  1.00 
ATOM    434  C   VAL B  54      24.749  51.690  24.060  1.00  1.00 
ATOM    435  O   VAL B  54      24.588  52.762  23.458  1.00  1.00 
ATOM    436  CB  VAL B  54      27.069  50.737  24.606  1.00  1.00 
ATOM    437  CG1 VAL B  54      27.625  51.275  23.292  1.00  1.00 
ATOM    438  CG2 VAL B  54      28.162  50.652  25.660  1.00  1.00 
REMARK =================== End of entry for prediction competition  =========== 
TER 
REMARK Sun Aug 30 17:13:01 1998 
REMARK This software is guaranteed 100% free of any Biosym, MSI, 
REMARK Oxford Molecular or other corporate influence. 
REMARK ======================================================================== 
REMARK Input script 
REMARK # 4 May 98 
REMARK puts -nonewline "Running from " 
REMARK pwd 
REMARK REMARK puts "This script is gross overkill, just to make a few" 
REMARK puts "models for our sequence" 
REMARK REMARK version 
REMARK REMARK lappend PROTLIST 2kauA 1ytfB 1ecmA 
REMARK REMARK lappend PNLTY_SCL_1 2000 
REMARK lappend OVRLP_SCL_1 750 
REMARK REMARK lappend PNLTY_SCL_2 250 
REMARK lappend OVRLP_SCL_2 250 
REMARK REMARK lappend PNLTY_MED_1 5 
REMARK REMARK lappend PNLTY_MED_2 1 
REMARK REMARK set sec_wt 50 
REMARK REMARK set NUM_MODELS 20 
REMARK REMARK set cptn_flag 1 
REMARK set cptn_auth   "2410-6622-2807" 
REMARK REMARK # These initial values will be used in the first force field 
REMARK REMARK set seq_dangle    -1 
REMARK set strct_dangle  -1 
REMARK REMARK set scr_func score_tanh_cxa 
REMARK set enrgy_av   100.0 
REMARK set do_nrgy_shft 1 
REMARK set algn_iter 0 
REMARK REMARK set my_home       [lindex [array get env HOME] 1] 
REMARK set PDBLIB        /rsc/appenzeller/scrapp/torda/pdblib 
REMARK set PARAM_FILE    $my_home/sausage/tests/cx_allat.param.gz 
REMARK set SECOND_PARAM  $my_home/sausage/tests/cc_allat_p370+0.param.gz 
REMARK set SEC_PRDCT_DIR ./seq 
REMARK set SEQ_FILE $argv 
REMARK puts "SEQ_FILE is $SEQ_FILE" 
REMARK set seq_base [ string range $SEQ_FILE 0 [ expr [ string first ".seq" $SE 
REMARK Q_FILE ] - 1 ] ] 
REMARK puts "Sequence file is $SEQ_FILE and base is $seq_base" 
REMARK set sec_prdct_file \ 
REMARK [ string range $seq_base [ expr [ string last "/" $seq_base ] + 1 ] end  
REMARK ] 
REMARK set sec_prdct_file ${SEC_PRDCT_DIR}/${sec_prdct_file}.PHD 
REMARK REMARK if { ! [ file exists $sec_prdct_file ] } then { 
REMARK     puts "sec struct file $sec_prdct_file not found" 
REMARK     exit 1 
REMARK } 
REMARK REMARK #----------- long_2_short --------------- 
REMARK proc long_2_short { long } { 
REMARK REMARK     set a [string last / $long] 
REMARK     incr a 
REMARK     set b [string last .bin $long] 
REMARK     incr b -1 
REMARK     set name [ string range $long $a $b ] 
REMARK     return $name 
REMARK } 
REMARK REMARK #----------- make_models ---------------- 
REMARK # make the directory if it is not there 
REMARK proc make_models { summ dir suffix} { 
REMARK     global NUM_MODELS 
REMARK     check_for_dir $dir 
REMARK    set last [size_str $summ ] 
REMARK #    set last $NUM_MODELS  
REMARK     puts "last is $last" 
REMARK     for  { set i 0 } { $i < $last } {incr i} { 
REMARK         set tmp_a [open_str t_align $summ $i] 
REMARK         set name [ fname_str $tmp_a ] 
REMARK         set name [ long_2_short $name] 
REMARK         set pdb [open_str pdb $tmp_a ] 
REMARK         print_str $pdb $dir/${name}.$suffix 
REMARK         close_str $pdb 
REMARK         close_str $tmp_a 
REMARK     } 
REMARK } 
REMARK REMARK #----------- check_for_dir -------------- 
REMARK proc check_for_dir { dir } { 
REMARK     if  { ! [ file exists $dir ] }  then { 
REMARK         puts "Creating $dir" 
REMARK         exec mkdir $dir 
REMARK     } else { 
REMARK #       There is a file of that name, check its type 
REMARK         if { ! [file isdirectory $dir ] } then { 
REMARK             puts "file $dir exists, but is not a directory, bailing out" 
REMARK         } 
REMARK #       else we use the existing directory 
REMARK     } 
REMARK } 
REMARK REMARK REMARK #----------- main  ---------------------- 
REMARK REMARK dump_vars 
REMARK REMARK set seq [open_str text $SEQ_FILE] 
REMARK puts "secondary structure prediction coming from $sec_prdct_file" 
REMARK add_sec_s $seq $sec_prdct_file 
REMARK REMARK REMARK puts "Sequence info:" 
REMARK info_str $seq 
REMARK REMARK set count 0 
REMARK foreach pnlty_scl_1 $PNLTY_SCL_1 { 
REMARK     set ovrlp_scl_1 [ lindex $OVRLP_SCL_1 $count ] 
REMARK     foreach pnlty_med_1 $PNLTY_MED_1 { 
REMARK         set summary [open_str libsrch $seq] 
REMARK         puts "" 
REMARK REMARK         set ovrlp_scl $ovrlp_scl_1 
REMARK         set pnlty_scl $pnlty_scl_1 
REMARK         set pnlty_med $pnlty_med_1 
REMARK         set pnlty_lrg $pnlty_med 
REMARK         puts "non specific force field" 
REMARK         puts "pnlty_scl = $pnlty_scl ovrlp_scl = $ovrlp_scl" 
REMARK         puts "pnlty_med = $pnlty_med pnlty_lrg = $pnlty_lrg" 
REMARK         set parm [open_str param $PARAM_FILE] 
REMARK         foreach f  $PROTLIST { 
REMARK             set coord [open_str coord   $PDBLIB/${f}.bin] 
REMARK             set algn  [open_str t_align $coord $seq $parm] 
REMARK             add_algn $summary $algn 
REMARK             close_str $algn 
REMARK             close_str $coord 
REMARK         } 
REMARK         close_str $parm 
REMARK         libsrch_sort scr_tot  $summary 
REMARK         puts "\nSorted by total score in first, non-specific force field 
REMARK " 
REMARK         set verbosity 1 
REMARK         set nm_prnt_algn 100 
REMARK         print_str $summary 
REMARK #       Models from first alignment 
REMARK #       make_models $summary ini_${seq_base}_models ${pnlty_scl}.${ovrlp 
REMARK _scl} 
REMARK REMARK         set parm [open_str param $SECOND_PARAM] 
REMARK         set first_time 1 
REMARK         foreach  ovrlp_scl_2 $OVRLP_SCL_2 { 
REMARK             foreach pnlty_scl_2 $PNLTY_SCL_2 { 
REMARK                 foreach pnlty_med_2 $PNLTY_MED_2 { 
REMARK 		    set ovrlp_scl $ovrlp_scl_2 
REMARK 		    set pnlty_scl $pnlty_scl_2 
REMARK 		    set pnlty_med $pnlty_med_2 
REMARK 		    set pnlty_lrg $pnlty_med 
REMARK 		    puts "Rescore, resort in all-atom force field with" 
REMARK 		    puts "pnlty_scl = $pnlty_scl ovrlp_scl = $ovrlp_scl" 
REMARK 		    puts "pnlty_med = $pnlty_med pnlty_lrg = $pnlty_lrg" 
REMARK 		    puts -nonewline "(First f field: pnlty_scl = $pnlty_scl_1" 
REMARK 		    puts    " ovrlp_scl=$ovrlp_scl_1" 
REMARK 		    puts "(pnlty_med = pnlty_lrg = $pnlty_med" 
REMARK 		    libsrch_rescore $summary $parm 
REMARK 		    libsrch_sort scr_tot $summary 
REMARK 		    set verbosity 1 ; set nm_prnt_algn 50 
REMARK 		    print_str $summary 
REMARK 		    make_models $summary models pdb 
REMARK 		    if { $first_time == 1 } { 
REMARK 			set first_time 0 
REMARK 			puts "Repeating above alignment, with more detail" 
REMARK 			set verbosity 3 ; set nm_prnt_algn 15 
REMARK 			print_str $summary 
REMARK 		    } 
REMARK                 } 
REMARK             } 
REMARK         } 
REMARK 	close_str $parm 
REMARK 	close_str $summary 
REMARK     } 
REMARK     incr count 
REMARK } 
REMARK REMARK REMARK close_str $seq 
REMARK exec uname -a 
REMARK puts -nonewline "Finishing at " 
REMARK puts [exec date] 
REMARK ======================================================================== 
REMARK ======================================================================== 
REMARK About to look for version idents 
REMARK /rsc/appenzeller/u5/torda/bin/sausage: 
REMARK      $Id: main.c,v 1.14 1998/08/20 07:57:14 torda Exp $ 
REMARK      $Id: commands.c,v 1.41 1998/08/19 09:09:34 torda Exp $ 
REMARK      $Id: misc.c,v 1.14 1998/07/07 04:53:01 torda Exp $ 
REMARK      $Id: mprintf.c,v 1.18 1998/08/19 01:53:45 torda Exp $ 
REMARK      $Id: s_cmd.c,v 1.38 1998/08/19 01:52:54 torda Exp $ 
REMARK      $Id: s_obj.c,v 1.109 1998/08/08 06:59:37 torda Exp $ 
REMARK      $Id: str_up.c,v 1.4 1998/08/06 02:06:37 torda Exp $ 
REMARK      $Id: vars.c,v 1.37 1998/06/09 07:30:57 torda Exp $ 
REMARK      $Id: vrsn_cmd.c,v 1.1 1996/03/11 11:46:59 torda Exp $ 
REMARK      $Id: aa_conv.c,v 1.22 1997/11/11 09:42:44 torda Exp $ 
REMARK      $Id: e_malloc.c,v 1.9 1998/01/01 02:54:28 torda Exp $ 
REMARK      $Id: ff_sel.c,v 1.15 1998/08/18 23:46:41 torda Exp $ 
REMARK      $Id: getcoord.c,v 1.49 1998/08/19 00:07:11 torda Exp $ 
REMARK      $Id: getparam.c,v 1.6 1998/08/19 09:41:57 torda Exp $ 
REMARK      $Id: global.c,v 1.2 1998/08/08 06:02:19 torda Exp $ 
REMARK      $Id: mgc_num.c,v 1.5 1998/05/07 03:32:51 torda Exp $ 
REMARK      $Id: myrand.c,v 1.13 1998/01/08 00:23:42 torda Exp $ 
REMARK      $Id: pdbout.c,v 1.33 1998/08/09 08:25:49 torda Exp $ 
REMARK      $Id: read_sec.c,v 1.6 1998/08/22 08:47:53 torda Exp $ 
REMARK      $Id: reg_str.c,v 1.11 1998/08/08 06:25:24 torda Exp $ 
REMARK      $Id: repl_str.c,v 1.3 1998/08/21 07:06:48 torda Exp $ 
REMARK      $Id: s_s_alin.c,v 1.89 1998/08/19 02:04:38 torda Exp $ 
REMARK      $Id: scorefct.c,v 1.14 1998/08/19 01:50:49 torda Exp $ 
REMARK      $Id: sec_s.c,v 1.13 1998/08/19 01:45:20 torda Exp $ 
REMARK      $Id: subba.c,v 1.1 1998/08/19 01:05:18 torda Exp $ 
REMARK      $Id: zfopen.c,v 1.10 1998/01/08 00:22:55 torda Exp $ 
REMARK      $Id: cc_allat_x.c,v 1.6 1997/07/10 12:23:03 torda Exp $ 
REMARK      $Revision: 1.7 $ 
REMARK ======================================================================== 
END 
